Repin1 (replication initiator 1) - Rat Genome Database

Name: Repin1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Repin1 (replication initiator 1) Rattus norvegicus

Analyze

Symbol:

Repin1

Name:

replication initiator 1

RGD ID:

1549707

Description:

Predicted to have chromatin insulator sequence binding activity. Predicted to be involved in positive regulation of glucose import; regulation of fatty acid transport; and regulation of transcription by RNA polymerase II. Predicted to localize to several cellular components, including cytosolic ribosome; lipid droplet; and nucleus. Orthologous to human REPIN1 (replication initiator 1); INTERACTS WITH 3,3',4,4',5-pentachlorobiphenyl; bisphenol A; decabromodiphenyl ether.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

Ap-4; Ap4

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	REPIN1 (replication initiator 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Repin1 (replication initiator 1)	HGNC	Treefam, EggNOG, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, PhylomeDB, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Repin1 (replication initiator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	REPIN1 (replication initiator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	REPIN1 (replication initiator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Repin1 (replication initiator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	REPIN1 (replication initiator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	REPIN1 (replication initiator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Repin1 (replication initiator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	REPIN1 (replication initiator 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Mus musculus (house mouse):	Repin1 (replication initiator 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Drosophila melanogaster (fruit fly):	CG14667	Alliance	DIOPT (Ensembl Compara\|PANTHER)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	4	77,548,722 - 77,554,242 (+)	NCBI
Rnor_6.0 Ensembl	4	78,233,332 - 78,236,781 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	4	78,232,454 - 78,237,498 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	4	142,896,159 - 142,901,182 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	76,688,429 - 76,690,141 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
Celera	4	72,488,962 - 72,490,674 (+)	NCBI		Celera
Cytogenetic Map	4	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

long QT syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2-methylcholine (ISO)

3,3',4,4',5-pentachlorobiphenyl (EXP)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-diaminodiphenylmethane (ISO)

acrolein (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

amiodarone (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

butanal (ISO)

chromium atom (ISO)

cisplatin (ISO)

copper(II) sulfate (ISO)

decabromodiphenyl ether (EXP)

diarsenic trioxide (ISO)

doxorubicin (ISO)

endosulfan (EXP)

enzyme inhibitor (ISO)

ethanol (ISO)

fenvalerate (EXP)

hexadecanoic acid (ISO)

methotrexate (ISO)

N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine (ISO)

N-ethyl-N-nitrosourea (ISO)

orphenadrine (EXP)

ozone (ISO)

phenol (ISO)

potassium dichromate (ISO)

sodium dodecyl sulfate (ISO)

valproic acid (ISO)

vinclozolin (EXP)

zinc sulfate (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA replication (IEA)

positive regulation of glucose import (ISO)

regulation of fatty acid transport (ISO)

regulation of transcription by RNA polymerase II (IBA)

Cellular Component

chromosome (IBA)

cytosol (ISO)

cytosolic ribosome (ISO)

lipid droplet (ISO)

nuclear membrane (ISO)

nucleoplasm (IEA,ISO)

Molecular Function

chromatin insulator sequence binding (IBA)

DNA binding (IEA)

metal ion binding (IEA)

protein binding (ISO)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	RGD automated data pipeline
3.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:14572453	PMID:17173329	PMID:20727851	PMID:21701954	PMID:22658674

Genomics

Comparative Map Data

Repin1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	4	77,548,722 - 77,554,242 (+)	NCBI
Rnor_6.0 Ensembl	4	78,233,332 - 78,236,781 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	4	78,232,454 - 78,237,498 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	4	142,896,159 - 142,901,182 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	76,688,429 - 76,690,141 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
Celera	4	72,488,962 - 72,490,674 (+)	NCBI		Celera
Cytogenetic Map	4	q24	NCBI

REPIN1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	7	150,368,189 - 150,374,044 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	7	150,368,096 - 150,374,043 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	7	150,065,361 - 150,071,133 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
GRCh37	7	150,065,185 - 150,071,128 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	149,696,812 - 149,702,066 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	7	149,505,905 - 149,508,772	NCBI
Celera	7	144,622,973 - 144,628,227 (+)	NCBI
Cytogenetic Map	7	q36.1	NCBI
HuRef	7	143,882,207 - 143,887,461 (+)	NCBI		HuRef
CHM1_1	7	150,072,703 - 150,077,957 (+)	NCBI		CHM1_1
CRA_TCAGchr7v2	7	149,403,728 - 149,408,982 (+)	NCBI

Repin1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	48,570,817 - 48,576,016 (+)	NCBI	GRCm39		mm39
GRCm38	6	48,593,883 - 48,599,082 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	48,593,883 - 48,599,082 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	48,543,882 - 48,549,081 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	6	48,523,526 - 48,528,670 (+)	NCBI			mm8
Celera	6	49,104,840 - 49,110,039 (+)	NCBI		Celera
Cytogenetic Map	6	B2.3	NCBI

Repin1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955491	4,973,797 - 4,976,974 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955491	4,973,192 - 4,977,970 (+)	NCBI	ChiLan1.0	ChiLan1.0

REPIN1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	7	154,137,378 - 154,142,614 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	154,137,478 - 154,141,516 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	7	141,984,725 - 141,989,973 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

REPIN1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	16	14,669,587 - 14,690,502 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	16	14,659,046 - 14,690,997 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Repin1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936527	5,973,376 - 5,978,327 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

REPIN1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	18	55,924,882 - 55,932,270 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	18	55,925,529 - 55,930,698 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

REPIN1
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	118,512,581 - 118,517,945 (+)	NCBI
ChlSab1.1 Ensembl	21	118,513,570 - 118,518,862 (+)	Ensembl

Repin1
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624800	6,118,002 - 6,153,200 (-)	NCBI

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
619616	Bp79	Blood pressure QTL 79		0.0292	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	3043231	79575658	Rat
2303168	Bp330	Blood pressure QTL 330	4.25	0.017	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	3043231	145254791	Rat
631261	Tcas3	Tongue tumor susceptibility QTL 3	6.88		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	4	7342404	92484039	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	7850904	182171018	Rat
10755501	Bp390	Blood pressure QTL 390	2.5		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	4	23850384	169318094	Rat
8655906	Rf60	Renal function QTL 60	3.8		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	4	26654749	81874227	Rat
12798520	Anxrr55	Anxiety related response QTL 55	4.45	0.01	locomotor behavior trait (VT:0001392)	number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)	4	29549895	112807890	Rat
8552782	Vie1	Viral induced encephalitis QTL 1	26.4		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	4	31825560	83531021	Rat
8552801	Bw143	Body weight QTL 143	7.3		body mass (VT:0001259)	change in body weight to body weight ratio (CMO:0002216)	4	31825560	83531021	Rat
8552809	Vie5	Viral induced encephalitis QTL 5	25.3		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	4	31825560	83531021	Rat
8655961	Kidm43	Kidney mass QTL 43	18		kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	4	34277932	99067150	Rat
1358352	Srcrt3	Stress Responsive Cort QTL 3	2.29		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	36615599	145611886	Rat
1300139	Hrtrt6	Heart rate QTL 6	2.85		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	4	37703272	115372927	Rat
61445	Strs3	Sensitivity to stroke QTL 3	3		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	4	39208222	84208222	Rat
8694439	Bw168	Body weight QTL 168	9.57	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	4	39208247	84208247	Rat
6893678	Bw108	Body weight QTL 108	2.6	0.006	body mass (VT:0001259)	body weight (CMO:0000012)	4	42415777	87415777	Rat
1576305	Emca6	Estrogen-induced mammary cancer QTL 6	5.8		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	4	43414605	155469929	Rat
1354660	Salc1	Saline consumption QTL 1	11.26		drinking behavior trait (VT:0001422)	saline drink intake rate (CMO:0001627)	4	43414792	146942075	Rat
1354612	Foco1	Food consumption QTL 1	8.87		eating behavior trait (VT:0001431)	food intake rate (CMO:0000427)	4	43414792	146942075	Rat
1298082	Stresp4	Stress response QTL 4			blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	46898276	145611886	Rat
2312567	Glom19	Glomerulus QTL 19	1.9	0.006	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	4	49906054	145611886	Rat
4889969	Bss96	Bone structure and strength QTL 96	4.9		tibia size trait (VT:0100001)	tibia cortical bone volume (CMO:0001725)	4	55324857	79575658	Rat
4889972	Bss97	Bone structure and strength QTL 97	5.6		tibia size trait (VT:0100001)	tibia total bone volume (CMO:0001724)	4	55324857	79575658	Rat
5685009	Bmd86	Bone mineral density QTL 86	3.7		tibia mineral mass (VT:1000283)	bone mineral density (CMO:0001226)	4	55324857	79575658	Rat
5685012	Bmd87	Bone mineral density QTL 87	5.1		tibia mineral mass (VT:1000283)	bone mineral content (CMO:0001554)	4	55324857	79575658	Rat
70200	Alc18	Alcohol consumption QTL 18	9.2		drinking behavior trait (VT:0001422)	ethanol intake volume to total fluid intake volume ratio (CMO:0001591)	4	55324953	148360954	Rat
1641833	Alc21	Alcohol consumption QTL 21	8.6	0.0001	drinking behavior trait (VT:0001422)	ethanol drink intake rate (CMO:0001407)	4	55375865	125671711	Rat
634311	Sach7	Saccharin preference QTL 7			taste sensitivity trait (VT:0001986)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	4	55791564	82134846	Rat
631546	Bp86	Blood pressure QTL 86	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	55791564	92484312	Rat
61336	Bp21	Blood pressure QTL 21	4.6		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	55791834	79557856	Rat
1578657	Bss12	Bone structure and strength QTL 12	8.9		femur morphology trait (VT:0000559)	femoral neck cross-sectional area (CMO:0001697)	4	56092756	101092756	Rat
1578658	Bss13	Bone structure and strength QTL 13	8		femur strength trait (VT:0010010)	femoral neck polar moment of inertia (CMO:0001670)	4	56092756	101092756	Rat
1558651	Swd3	Spike wave discharge measurement QTL 3	4.62	0.000024	brain electrophysiology trait (VT:0010557)	brain spike-and-wave discharge frequency (CMO:0001742)	4	57101077	92990863	Rat
631671	Iddm11	Insulin dependent diabetes mellitus QTL 11	3.6	0.0012	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	4	57307075	79578854	Rat
1358363	Sradr3	Stress Responsive Adrenal Weight QTL 3	6.19		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	4	58166424	103166424	Rat
738009	Sach4	Saccharine consumption QTL 4	4.9	0.000016	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	4	58640017	154427984	Rat
738016	Alc16	Alcohol consumption QTL 16	3.6	0.00015	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	58640017	154427984	Rat
738031	Alc14	Alcohol consumption QTL 14	7.6	0.00003	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	58640017	154427984	Rat
1549843	Bw53	Body weight QTL 53		0.0001	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	60439127	99066957	Rat
1549839	Bw52	Body weight QTL 52		0.0001	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	60439127	113416139	Rat
61418	Pia5	Pristane induced arthritis QTL 5	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	61038901	127777403	Rat
7394826	Bw126	Body weight QTL 126		0.002	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	61708103	88565113	Rat
8552807	Vie4	Viral induced encephalitis QTL 4	7.3		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	4	61708341	83531021	Rat
70192	BpQTLcluster5	Blood pressure QTL cluster 5	4.183		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	4	61708341	113100992	Rat
70192	BpQTLcluster5	Blood pressure QTL cluster 5	4.183		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	61708341	113100992	Rat
70192	BpQTLcluster5	Blood pressure QTL cluster 5	4.183		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	61708341	113100992	Rat
70192	BpQTLcluster5	Blood pressure QTL cluster 5	4.183		arterial blood pressure trait (VT:2000000)	percent change in mean arterial blood pressure (CMO:0002035)	4	61708341	113100992	Rat
70192	BpQTLcluster5	Blood pressure QTL cluster 5	4.183		arterial blood pressure trait (VT:2000000)	percent change in systolic blood pressure (CMO:0000747)	4	61708341	113100992	Rat
70192	BpQTLcluster5	Blood pressure QTL cluster 5	4.183		arterial blood pressure trait (VT:2000000)	absolute change in pulse pressure (CMO:0001882)	4	61708341	113100992	Rat
70192	BpQTLcluster5	Blood pressure QTL cluster 5	4.183		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	4	61708341	113100992	Rat
2300179	Bmd50	Bone mineral density QTL 50	5.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	4	61975371	106975371	Rat
1641919	Alc22	Alcohol consumption QTL 22		0.0005	drinking behavior trait (VT:0001422)	ethanol drink intake rate (CMO:0001407)	4	62947687	125671711	Rat
631674	Iddm14	Insulin dependent diabetes mellitus QTL 14			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	4	63537179	157286626	Rat
6478684	Anxrr30	Anxiety related response QTL 30		0.00087	defecation behavior trait (VT:0010462)	defecation rate (CMO:0000998)	4	63812687	108812687	Rat
6478743	Anxrr40	Anxiety related response QTL 40		0.83076	defecation behavior trait (VT:0010462)	defecation rate (CMO:0000998)	4	63812687	108812687	Rat
6478772	Anxrr49	Anxiety related response QTL 49		0.15488	defecation behavior trait (VT:0010462)	defecation rate (CMO:0000998)	4	63812687	108812687	Rat
631651	Bp124	Blood pressure QTL 124	3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	63938412	108938412	Rat
2312569	Pur19	Proteinuria QTL 19	3.4	0.001	total urine protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	4	65989243	97759057	Rat
61330	Eau1	Experimental allergic uveoretinitis QTL 1		0.0003	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	4	70773471	132455556	Rat
634344	Hcar7	Hepatocarcinoma resistance QTL 7	7.8		liver integrity trait (VT:0010547)	liver tumorous lesion area to total liver area ratio (CMO:0001075)	4	71476518	116476518	Rat
634344	Hcar7	Hepatocarcinoma resistance QTL 7	7.8		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	4	71476518	116476518	Rat
631646	Stl4	Serum triglyceride level QTL 4	6.5	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	4	73786419	132455556	Rat
724522	Bp146	Blood pressure QTL 146	2.2	0.0021	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	75258970	120258970	Rat
2302051	Pia28	Pristane induced arthritis QTL 28	5.3	0.001	blood autoantibody amount (VT:0003725)	serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)	4	75258970	120258970	Rat
738015	Pia9	Pristane induced arthritis QTL 9	4.5	0.048	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	76567036	121567036	Rat
70167	Bw22	Body weight QTL 22	3.1		body mass (VT:0001259)	body weight (CMO:0000012)	4	77307388	116916073	Rat
1357342	Bw40	Body weight QTL 40		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	4	77307388	116916073	Rat
2306545	Iddm39	Insulin dependent diabetes mellitus QTL 39			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	78039977	78371222	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	80
Count of miRNA genes:	70
Interacting mature miRNAs:	76
Transcripts:	ENSRNOT00000011032
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	2	26	43	30	6	30		1	71	33	30	2
Low	1	17	14	11	13	11	8	10	3	2	11	9	8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001005893	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006236423	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006236424	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006236425	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006236426	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006236427	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006236428	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006236429	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC099444	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY691175	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000142	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000011032 ⟹ ENSRNOP00000011032

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	4	78,233,332 - 78,236,781 (+)	Ensembl

RefSeq Acc Id:

NM_001005893 ⟹ NP_001005893

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	77,551,476 - 77,553,188 (+)	NCBI
Rnor_6.0	4	78,234,731 - 78,236,443 (+)	NCBI
Rnor_5.0	4	142,896,159 - 142,901,182 (+)	NCBI
RGSC_v3.4	4	76,688,429 - 76,690,141 (+)	RGD
Celera	4	72,488,962 - 72,490,674 (+)	RGD

Sequence:

show sequence

GGAGAGCAGAGGAAGAACCGATGCTGGAACGGCGCTGCAGGGGCCCCACGGCCATGGGCCCAGC
CCATCCCTGGCTTTTTTCTGGGCCCTCCCAGGAGTCCTCCCAGCCCAACAGAGGGTTGAGGTAT
CAAGGCAAATCAGTAGCACAGCCAGGAGGCCCAGCCCCAGTCAAGGTCCATCGTTGTGCCCACT
GTCGGAAGCGTTTCCCAGGCTGGGTGGCCCTGTGGCTTCACACTCGGCGGTGCCAGGCCCGGCT
GCCTCTGCCCTGCCATGAGTGCAACCAGCGCTTTCGCCACGCCCCCTTCTTAGCGCTGCATCTT
CAGGTTCATGCTTCTGCAGTCCCTGACCTGGGTTTCATCTGCCACCTATGTGGGCATAGCTTCC
GAGGCTGGGTAGCCCTGGTTCTGCATCTGCGGGCTCACTCGGCTTCAAAGAGGCCCATCACTTG
TCCTGAATGCAACAAACGCTTCTGGCGACAAAAACAGCTTCGAGCTCACCTGCGGAGGTGCCAG
CCCCCTGCCCCTGAGGCCCGGCCCTTCATATGTGGCAACTGTGGCCGGAGCTTCGCCCAATGGG
ACCAGCTCGTTGTTCACAAGAGGGTGCACGTGGCTGAGGCCTTGGAGGAGGCAGCAGCCAAGGC
CCTGGGTCCTCGCCCGCGAGGACGTCCTTCAGTGACTGCTCCCAGGCCTGGTGGAGATGCTGTG
GACCGCCCCTTCCAGTGTGCCTGCTGCGGCAAGCGCTTCCGCCACAAGCCCAACCTGATTGCCC
ACCGCCGCGTGCACACTGGCGAGCGACCACACCAGTGCCCAGAGTGCGGGAAGCGTTTCACCAA
CAAGCCCTACCTGACCTCGCACCGCCGTATACATACGGGCGAGAAGCCCTACCCATGCACCGAG
TGTGGCCGCCGCTTCCGCCACAAACCCAACCTGTTGTCGCACAGTAAAATCCACAAGCGCTCAG
AGGTCTCAGCGCAGGCTGCCTCCCACACCGGGAGTCACTTGATTGCAGCGGAGCCTATGGCACA
ACCTGCGCTTGGGGTGCCCCTGGGGTCCCTGAGGACCCCGGCCGAGGCACCTGCGTCCCTGCAT
AGCTGCACTGACTGCGGCCGCAGCTTCCGGCTGGAGCGTTTCCTGCGGCTACACCAGCGGCAGC
ACACAGGCGAGAGGCCCTTCACCTGCACAGAGTGTGGCAAGAACTTCGGCAAGAAAACGCACCT
GGTGGCGCACTCACGCGTGCACTCGGGCGAGCGGCCCTTTGCCTGCGAGGAGTGTGGTCGCCGT
TTCTCACAGGGCAGCCACCTGGCAGCCCACCGGCGCGACCATGCACCAGAGAGACCCTTTGTGT
GCCCAGACTGCGGCAAGGCTTTCCGCCACAAGCCCTACCTGGCCGCGCACCGACGCATCCACAC
AGGCGAGAAGCCCTATGTGTGTCCCGACTGTGGCAAAGCTTTCAGCCAGAAGTCCAACCTGGTG
TCCCACCGGCGCATCCACACAGGTGAGCGGCCCTACGCCTGCCCCGACTGTGATCGCAGCTTCA
GTCAGAAGTCCAACCTTATCACACACCGGAAGAGCCACATCCGGGATGGCGCCTTCTGCTGTGC
CATCTGCGGCCAGACCTTTGACGATGAGGACCGTCTCTTGATGCACCAGAAGAAGCACGATGCC
TGAGAGGGACCCAGGAAGACAGGCCTAGATGTCCTGGCAACAGGGTGTCAGT

hide sequence

RefSeq Acc Id:

XM_006236423 ⟹ XP_006236485

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	77,549,409 - 77,554,242 (+)	NCBI
Rnor_6.0	4	78,232,623 - 78,237,498 (+)	NCBI
Rnor_5.0	4	142,896,159 - 142,901,182 (+)	NCBI

Sequence:

show sequence

GCGCAGGGGCCACGGAGGGCGTGCGGGGGCAGCTCCACCTGTGGGGCGCGTGACCGTGAGTGTG
TGCGGCTGTGGGGTTCGCGCGCGCGCGGAATGGGGAGGAGGGAGTGTTGCTGCGCCGGGCGAGC
GCACCTGCGCACAGGCTCCGCGGGCTGCGCCGTGCGTGGGACCCGAGATGGCCCACTCGCTAAT
CGGAACTGGACCGGCGAGCCAGCGAATGTGGACGGAGGACACGCACGGATACAAAGGGGGAGTG
TGTGGGCATGCTCCCACCCGGGGCTGCCTTAGATATCCAAGGGGATTCTGGCGAGTCCCAGGCA
CACTGGCGCTCTCTGCTTAGACCCTCGGGAAACAGGCCTGGAATTTATGTTGCGAGGAGAGTGG
GGGAAGGGGAGCCAATAGGGATTCCAGAGTTACTGCCTAGGCAGCCCTTTGGCCACCGAGAAAG
AACCTCGCCGCAGTTGGAGAATTCTTCTGTGGCCCTACCAGGCTAGGAGGTGGCCCCTAAAGGC
AGCACTGTGCTTGCATAGTGAAGGGTCATATTCATGCTTTAGTCCAGTGCCCGCTAGGTCATTC
GGCCAGGCTGGGTATGGAGCTTAAGGCTGAATGAACCCTGTAGCCTTGAATCTGGGAGGGACTG
GGTGATGACACAAACCTGCCCTGGCAGAGCGCAGAGCCTCACACTCCCTTTTTTTCTCCCTTCC
CCAGGTAAGGCTGACCTCTCAGCAGTTAGAGGTCTGAGCTCTGCCATGGGGATAGGGATGTCTT
TATTGCTACAGTTTTCTCTGACATCCGGGGGCTACCGAAGTGTGGGCCGAAGCAGGCGCTGCAG
CAGAAGTATCCCCAGGAACATCCCCAGAAGGAGCTGGAAAAAGCCTCATCCCCAGCTCTGCAGT
CTTCAGGCAGAGGAAGAACCGATGCTGGAACGGCGCTGCAGGGGCCCCACGGCCATGGGCCCAG
CCCATCCCTGGCTTTTTTCTGGGCCCTCCCAGGAGTCCTCCCAGCCCAACAGAGGGTTGAGGTA
TCAAGGCAAATCAGTAGCACAGCCAGGAGGCCCAGCCCCAGTCAAGGTCCATCGTTGTGCCCAC
TGTCGGAAGCGTTTCCCAGGCTGGGTGGCCCTGTGGCTTCACACTCGGCGGTGCCAGGCCCGGC
TGCCTCTGCCCTGCCATGAGTGCAACCAGCGCTTTCGCCACGCCCCCTTCTTAGCGCTGCATCT
TCAGGTTCATGCTTCTGCAGTCCCTGACCTGGGTTTCATCTGCCACCTATGTGGGCATAGCTTC
CGAGGCTGGGTAGCCCTGGTTCTGCATCTGCGGGCTCACTCGGCTTCAAAGAGGCCCATCACTT
GCCCTGAATGCAACAAACGCTTCTGGCGACAAAAACAGCTTCGAGCTCACCTGCGGAGGTGCCA
GCCCCCTGCCCCTGAGGCCCGGCCCTTCATATGTGGCAACTGTGGCCGGAGCTTCGCCCAATGG
GACCAGCTCGTTGTTCACAAGAGGGTGCACGTGGCTGAGGCCTTGGAGGAGGCAGCAGCCAAGG
CCCTGGGTCCTCGCCCGCGAGGACGTCCTTCAGTGACTGCTCCCAGGCCTGGTGGAGATGCTGT
GGACCGCCCCTTCCAGTGTGCCTGCTGCGGCAAGCGCTTCCGCCACAAGCCCAACCTGATTGCC
CACCGCCGCGTGCACACTGGCGAGCGACCACACCAGTGCCCAGAGTGCGGGAAGCGTTTCACCA
ACAAGCCCTACCTGACCTCGCACCGCCGTATACATACGGGCGAGAAGCCCTACCCATGCACCGA
GTGTGGCCGCCGCTTCCGCCACAAACCCAACCTGTTGTCGCACAGTAAAATCCACAAGCGCTCA
GAGGTCTCAGCGCAGGCTGCCTCCCACACCGGGAGTCACTTGATTGCAGCGGAGCCTATGGCAC
AACCTGCGCTTGGGGTGCCCCTGGGGTCCCTGAGGACCCCGGCCGAGGCACCTGCGTCCCTGCA
TAGCTGCACTGACTGCGGCCGCAGCTTCCGGCTGGAGCGTTTCCTGCGGCTACACCAGCGGCAG
CACACAGGCGAGAGGCCCTTCACCTGCACAGAGTGTGGCAAGAACTTCGGCAAGAAAACGCACC
TGGTGGCGCACTCACGCGTGCACTCGGGCGAGCGGCCCTTTGCCTGCGAGGAGTGTGGTCGCCG
TTTCTCACAGGGCAGCCACCTGGCAGCCCACCGGCGCGACCATGCACCAGAGAGACCCTTTGTG
TGCCCAGACTGCGGCAAGGCTTTCCGCCACAAGCCCTACCTGGCCGCGCACCGACGCATCCACA
CAGGCGAGAAGCCCTATGTGTGTCCCGACTGTGGCAAAGCTTTCAGCCAGAAGTCCAACCTGGT
GTCCCACCGGCGCATCCACACAGGTGAGCGGCCCTACGCCTGCCCCGACTGTGATCGCAGCTTC
AGTCAGAAGTCCAACCTTATCACACACCGGAAGAGCCACATCCGGGATGGCGCCTTCTGCTGTG
CCATCTGCGGCCAGACCTTTGACGATGAGGACCGTCTCTTGATGCACCAGAAGAAGCACGATGC
CTGAGAGGGACCCAGGAAGACAGGCCTAGATGTCCTTGGCAACAGGGTGTCAGTGGCCTGGGTG
GGGTACCTACACTGACACTGTTAGAGGGACAGGCGGAGATCCCAGAGGGATAGAGGAGACAGTG
ATCTGGGCTCTGTTTAGGAATGGACTTTCTCCCAGGTGACCAGGGAACCCATTTTAGAATGCCG
GGATCTGGGTTTGAGCTAGTCAGGCCCCCAGCTGGTTTTTCTAAAGGTCAACTGAGACTGCCCT
GTACCCTGGAAAAAATAGCAATAGCAGCCCCATCTACCCTTTGAGTCCTCAACTAGCCACCAGT
GGGAAGGGAGCCACTCCATCCTCTGGTGTTAACGCCTTAATGTCCCCAGTCTTTACTATGAGTT
ACTTCAGGTCTTTTTTTTTTTTTTTTTTTTTTTAAAGTAGGTGTGGTATAGTCGTTAGCAAATG
AATCCTGGAGCAGGGAAAATGGGCCAGCCGGCTGCACCTTGGTGAACCTGCTGGCTTGTTAGGC
AGCAGCAGACATGAAGCTGAGCTGTTTGTTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTC
CTTCCTTTTTTCTTTTTTACCAGAACCTTTCTGCAATGCCTCCAGCAGAGGTACCCAGATGTGT
AGCGACCCATCCACAGCTAGCAATTCCATCTCTTTTGTGCATATTATCCTCCCAGGGCATTTAT
TTACTCCTTTACCTGCCTGGCTTTTTATCTGCCCGCTCTTCCCCAAATATACGCCTTCCTGGTG
ATTTTGTTTAAACCCCTGACCCTCCCCAACTCTTTTCAGAGCTTCAGGGGTTATGTGAAAGACT
AGCTGGGGGGTTGGCTGCAGGGAAAGTCCTGGGTAGATTTCCTTTTTAAGGTTTCCAGGGTATA
GATGCCAGCCTCTACCCATGCACCTGGGTGCTGGGTCACCGTTACCTCCAGAAGGCATTGCTTC
TACTGTCTAATTGTTAGAAATTCTTACAAGGATTGGGTTCTGCTTTCCTATGACTTCTGCCTAC
TGGGTCTTGTTTTGTTCCTTGGATCGAAACGTAACAACCATTTACCTTCCTTTACAAACTAGAG
AATAAAGATTTGGTTTTAGAA

hide sequence

RefSeq Acc Id:

XM_006236424 ⟹ XP_006236486

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	77,549,409 - 77,554,242 (+)	NCBI
Rnor_6.0	4	78,232,623 - 78,237,498 (+)	NCBI
Rnor_5.0	4	142,896,159 - 142,901,182 (+)	NCBI

Sequence:

show sequence

GCGCAGGGGCCACGGAGGGCGTGCGGGGGCAGCTCCACCTGTGGGGCGCGTGACCGTGAGTGTG
TGCGGCTGTGGGGTTCGCGCGCGCGCGGAATGGGGAGGAGGGAGTGTTGCTGCGCCGGGCGAGC
GCACCTGCGCACAGGCTCCGCGGGCTGCGCCGTGCGTGGGACCCGAGATGGCCCACTCGCTAAT
CGGAACTGGACCGGCGAGCCAGCGAATGTGGACGGAGGACACGCACGGATACAAAGGGGGAGTG
TGTGGGCATGCTCCCACCCGGGGCTGCCTTAGATATCCAAGGGGATTCTGGCGAGTCCCAGGCA
CACTGGCGCTCTCTGCTTAGACCCTCGGGAAACAGGCCTGGAATTTATGTTGCGAGGAGAGTGG
GGGAAGGGGAGCCAATAGGGATTCCAGAGTTACTGCCTAGGCAGCCCTTTGGCCACCGAGAAAG
AACCTCGCCGCAGTTGGAGAATTCTTCTGTGGCCCTACCAGGCTAGGAGGTGGCCCCTAAAGGC
AGCACTGTGCTTGCATAGTGAAGGGTCATATTCATGCTTTAGTCCAGTGCCCGCTAGGTCATTC
GGCCAGGCTGGGTATGGAGCTTAAGGCTGAATGAACCCTGTAGCCTTGAATCTGGGAGGGACTG
GGTGATGACACAAACCTGCCCTGGCAGAGCGCAGAGCCTCACACTCCCTTTTTTTCTCCCTTCC
CCAGGTAAGGCTGACCTCTCAGCAGTTAGAGGTCTGAGCTCTGCCATGGGGATAGGGATGTCTT
TATTGCTACAGTTTTCTCTGACATCCGGGGGCTACCGAAGTGTGGGCCGAAGCAGGCGCTGCAG
CAGAAGTATCCCCAGGAACATCCCCAGAAGGAGCTGGAAAAAGCCTCATCCCCAGCTCTGCAGT
CTTCAGGAGGAAGAACCGATGCTGGAACGGCGCTGCAGGGGCCCCACGGCCATGGGCCCAGCCC
ATCCCTGGCTTTTTTCTGGGCCCTCCCAGGAGTCCTCCCAGCCCAACAGAGGGTTGAGGTATCA
AGGCAAATCAGTAGCACAGCCAGGAGGCCCAGCCCCAGTCAAGGTCCATCGTTGTGCCCACTGT
CGGAAGCGTTTCCCAGGCTGGGTGGCCCTGTGGCTTCACACTCGGCGGTGCCAGGCCCGGCTGC
CTCTGCCCTGCCATGAGTGCAACCAGCGCTTTCGCCACGCCCCCTTCTTAGCGCTGCATCTTCA
GGTTCATGCTTCTGCAGTCCCTGACCTGGGTTTCATCTGCCACCTATGTGGGCATAGCTTCCGA
GGCTGGGTAGCCCTGGTTCTGCATCTGCGGGCTCACTCGGCTTCAAAGAGGCCCATCACTTGCC
CTGAATGCAACAAACGCTTCTGGCGACAAAAACAGCTTCGAGCTCACCTGCGGAGGTGCCAGCC
CCCTGCCCCTGAGGCCCGGCCCTTCATATGTGGCAACTGTGGCCGGAGCTTCGCCCAATGGGAC
CAGCTCGTTGTTCACAAGAGGGTGCACGTGGCTGAGGCCTTGGAGGAGGCAGCAGCCAAGGCCC
TGGGTCCTCGCCCGCGAGGACGTCCTTCAGTGACTGCTCCCAGGCCTGGTGGAGATGCTGTGGA
CCGCCCCTTCCAGTGTGCCTGCTGCGGCAAGCGCTTCCGCCACAAGCCCAACCTGATTGCCCAC
CGCCGCGTGCACACTGGCGAGCGACCACACCAGTGCCCAGAGTGCGGGAAGCGTTTCACCAACA
AGCCCTACCTGACCTCGCACCGCCGTATACATACGGGCGAGAAGCCCTACCCATGCACCGAGTG
TGGCCGCCGCTTCCGCCACAAACCCAACCTGTTGTCGCACAGTAAAATCCACAAGCGCTCAGAG
GTCTCAGCGCAGGCTGCCTCCCACACCGGGAGTCACTTGATTGCAGCGGAGCCTATGGCACAAC
CTGCGCTTGGGGTGCCCCTGGGGTCCCTGAGGACCCCGGCCGAGGCACCTGCGTCCCTGCATAG
CTGCACTGACTGCGGCCGCAGCTTCCGGCTGGAGCGTTTCCTGCGGCTACACCAGCGGCAGCAC
ACAGGCGAGAGGCCCTTCACCTGCACAGAGTGTGGCAAGAACTTCGGCAAGAAAACGCACCTGG
TGGCGCACTCACGCGTGCACTCGGGCGAGCGGCCCTTTGCCTGCGAGGAGTGTGGTCGCCGTTT
CTCACAGGGCAGCCACCTGGCAGCCCACCGGCGCGACCATGCACCAGAGAGACCCTTTGTGTGC
CCAGACTGCGGCAAGGCTTTCCGCCACAAGCCCTACCTGGCCGCGCACCGACGCATCCACACAG
GCGAGAAGCCCTATGTGTGTCCCGACTGTGGCAAAGCTTTCAGCCAGAAGTCCAACCTGGTGTC
CCACCGGCGCATCCACACAGGTGAGCGGCCCTACGCCTGCCCCGACTGTGATCGCAGCTTCAGT
CAGAAGTCCAACCTTATCACACACCGGAAGAGCCACATCCGGGATGGCGCCTTCTGCTGTGCCA
TCTGCGGCCAGACCTTTGACGATGAGGACCGTCTCTTGATGCACCAGAAGAAGCACGATGCCTG
AGAGGGACCCAGGAAGACAGGCCTAGATGTCCTTGGCAACAGGGTGTCAGTGGCCTGGGTGGGG
TACCTACACTGACACTGTTAGAGGGACAGGCGGAGATCCCAGAGGGATAGAGGAGACAGTGATC
TGGGCTCTGTTTAGGAATGGACTTTCTCCCAGGTGACCAGGGAACCCATTTTAGAATGCCGGGA
TCTGGGTTTGAGCTAGTCAGGCCCCCAGCTGGTTTTTCTAAAGGTCAACTGAGACTGCCCTGTA
CCCTGGAAAAAATAGCAATAGCAGCCCCATCTACCCTTTGAGTCCTCAACTAGCCACCAGTGGG
AAGGGAGCCACTCCATCCTCTGGTGTTAACGCCTTAATGTCCCCAGTCTTTACTATGAGTTACT
TCAGGTCTTTTTTTTTTTTTTTTTTTTTTTAAAGTAGGTGTGGTATAGTCGTTAGCAAATGAAT
CCTGGAGCAGGGAAAATGGGCCAGCCGGCTGCACCTTGGTGAACCTGCTGGCTTGTTAGGCAGC
AGCAGACATGAAGCTGAGCTGTTTGTTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTT
CCTTTTTTCTTTTTTACCAGAACCTTTCTGCAATGCCTCCAGCAGAGGTACCCAGATGTGTAGC
GACCCATCCACAGCTAGCAATTCCATCTCTTTTGTGCATATTATCCTCCCAGGGCATTTATTTA
CTCCTTTACCTGCCTGGCTTTTTATCTGCCCGCTCTTCCCCAAATATACGCCTTCCTGGTGATT
TTGTTTAAACCCCTGACCCTCCCCAACTCTTTTCAGAGCTTCAGGGGTTATGTGAAAGACTAGC
TGGGGGGTTGGCTGCAGGGAAAGTCCTGGGTAGATTTCCTTTTTAAGGTTTCCAGGGTATAGAT
GCCAGCCTCTACCCATGCACCTGGGTGCTGGGTCACCGTTACCTCCAGAAGGCATTGCTTCTAC
TGTCTAATTGTTAGAAATTCTTACAAGGATTGGGTTCTGCTTTCCTATGACTTCTGCCTACTGG
GTCTTGTTTTGTTCCTTGGATCGAAACGTAACAACCATTTACCTTCCTTTACAAACTAGAGAAT
AAAGATTTGGTTTTAGAA

hide sequence

RefSeq Acc Id:

XM_006236425 ⟹ XP_006236487

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	77,548,724 - 77,554,242 (+)	NCBI
Rnor_6.0	4	78,232,454 - 78,237,498 (+)	NCBI
Rnor_5.0	4	142,896,159 - 142,901,182 (+)	NCBI

Sequence:

show sequence

GAACCCGGCGCGTGGGGGGAGGTTGGGGACGGGCCTGGCAGTTGTGAACTCGAACCTGCTGCTG
TCGCCGCTGCAGGGCGGGGAACCGGCCGCAGAGGCCGGCTTGGTGCTCTATGGATGGGCGCCGC
GTCCCTGCAGAGCACGCGGGAGAGTTTTCTCTGACATCCGGGGGCTACCGAAGTGTGGGCCGAA
GCAGGCGCTGCAGCAGAAGTATCCCCAGGAACATCCCCAGAAGGAGCTGGAAAAAGCCTCATCC
CCAGCTCTGCAGTCTTCAGGCAGAGGAAGAACCGATGCTGGAACGGCGCTGCAGGGGCCCCACG
GCCATGGGCCCAGCCCATCCCTGGCTTTTTTCTGGGCCCTCCCAGGAGTCCTCCCAGCCCAACA
GAGGGTTGAGGTATCAAGGCAAATCAGTAGCACAGCCAGGAGGCCCAGCCCCAGTCAAGGTCCA
TCGTTGTGCCCACTGTCGGAAGCGTTTCCCAGGCTGGGTGGCCCTGTGGCTTCACACTCGGCGG
TGCCAGGCCCGGCTGCCTCTGCCCTGCCATGAGTGCAACCAGCGCTTTCGCCACGCCCCCTTCT
TAGCGCTGCATCTTCAGGTTCATGCTTCTGCAGTCCCTGACCTGGGTTTCATCTGCCACCTATG
TGGGCATAGCTTCCGAGGCTGGGTAGCCCTGGTTCTGCATCTGCGGGCTCACTCGGCTTCAAAG
AGGCCCATCACTTGCCCTGAATGCAACAAACGCTTCTGGCGACAAAAACAGCTTCGAGCTCACC
TGCGGAGGTGCCAGCCCCCTGCCCCTGAGGCCCGGCCCTTCATATGTGGCAACTGTGGCCGGAG
CTTCGCCCAATGGGACCAGCTCGTTGTTCACAAGAGGGTGCACGTGGCTGAGGCCTTGGAGGAG
GCAGCAGCCAAGGCCCTGGGTCCTCGCCCGCGAGGACGTCCTTCAGTGACTGCTCCCAGGCCTG
GTGGAGATGCTGTGGACCGCCCCTTCCAGTGTGCCTGCTGCGGCAAGCGCTTCCGCCACAAGCC
CAACCTGATTGCCCACCGCCGCGTGCACACTGGCGAGCGACCACACCAGTGCCCAGAGTGCGGG
AAGCGTTTCACCAACAAGCCCTACCTGACCTCGCACCGCCGTATACATACGGGCGAGAAGCCCT
ACCCATGCACCGAGTGTGGCCGCCGCTTCCGCCACAAACCCAACCTGTTGTCGCACAGTAAAAT
CCACAAGCGCTCAGAGGTCTCAGCGCAGGCTGCCTCCCACACCGGGAGTCACTTGATTGCAGCG
GAGCCTATGGCACAACCTGCGCTTGGGGTGCCCCTGGGGTCCCTGAGGACCCCGGCCGAGGCAC
CTGCGTCCCTGCATAGCTGCACTGACTGCGGCCGCAGCTTCCGGCTGGAGCGTTTCCTGCGGCT
ACACCAGCGGCAGCACACAGGCGAGAGGCCCTTCACCTGCACAGAGTGTGGCAAGAACTTCGGC
AAGAAAACGCACCTGGTGGCGCACTCACGCGTGCACTCGGGCGAGCGGCCCTTTGCCTGCGAGG
AGTGTGGTCGCCGTTTCTCACAGGGCAGCCACCTGGCAGCCCACCGGCGCGACCATGCACCAGA
GAGACCCTTTGTGTGCCCAGACTGCGGCAAGGCTTTCCGCCACAAGCCCTACCTGGCCGCGCAC
CGACGCATCCACACAGGCGAGAAGCCCTATGTGTGTCCCGACTGTGGCAAAGCTTTCAGCCAGA
AGTCCAACCTGGTGTCCCACCGGCGCATCCACACAGGTGAGCGGCCCTACGCCTGCCCCGACTG
TGATCGCAGCTTCAGTCAGAAGTCCAACCTTATCACACACCGGAAGAGCCACATCCGGGATGGC
GCCTTCTGCTGTGCCATCTGCGGCCAGACCTTTGACGATGAGGACCGTCTCTTGATGCACCAGA
AGAAGCACGATGCCTGAGAGGGACCCAGGAAGACAGGCCTAGATGTCCTTGGCAACAGGGTGTC
AGTGGCCTGGGTGGGGTACCTACACTGACACTGTTAGAGGGACAGGCGGAGATCCCAGAGGGAT
AGAGGAGACAGTGATCTGGGCTCTGTTTAGGAATGGACTTTCTCCCAGGTGACCAGGGAACCCA
TTTTAGAATGCCGGGATCTGGGTTTGAGCTAGTCAGGCCCCCAGCTGGTTTTTCTAAAGGTCAA
CTGAGACTGCCCTGTACCCTGGAAAAAATAGCAATAGCAGCCCCATCTACCCTTTGAGTCCTCA
ACTAGCCACCAGTGGGAAGGGAGCCACTCCATCCTCTGGTGTTAACGCCTTAATGTCCCCAGTC
TTTACTATGAGTTACTTCAGGTCTTTTTTTTTTTTTTTTTTTTTTTAAAGTAGGTGTGGTATAG
TCGTTAGCAAATGAATCCTGGAGCAGGGAAAATGGGCCAGCCGGCTGCACCTTGGTGAACCTGC
TGGCTTGTTAGGCAGCAGCAGACATGAAGCTGAGCTGTTTGTTTCCTTCCTTCCTTCCTTCCTT
CCTTCCTTCCTTCCTTCCTTTTTTCTTTTTTACCAGAACCTTTCTGCAATGCCTCCAGCAGAGG
TACCCAGATGTGTAGCGACCCATCCACAGCTAGCAATTCCATCTCTTTTGTGCATATTATCCTC
CCAGGGCATTTATTTACTCCTTTACCTGCCTGGCTTTTTATCTGCCCGCTCTTCCCCAAATATA
CGCCTTCCTGGTGATTTTGTTTAAACCCCTGACCCTCCCCAACTCTTTTCAGAGCTTCAGGGGT
TATGTGAAAGACTAGCTGGGGGGTTGGCTGCAGGGAAAGTCCTGGGTAGATTTCCTTTTTAAGG
TTTCCAGGGTATAGATGCCAGCCTCTACCCATGCACCTGGGTGCTGGGTCACCGTTACCTCCAG
AAGGCATTGCTTCTACTGTCTAATTGTTAGAAATTCTTACAAGGATTGGGTTCTGCTTTCCTAT
GACTTCTGCCTACTGGGTCTTGTTTTGTTCCTTGGATCGAAACGTAACAACCATTTACCTTCCT
TTACAAACTAGAGAATAAAGATTTGGTTTTAGAA

hide sequence

RefSeq Acc Id:

XM_006236426 ⟹ XP_006236488

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	77,548,722 - 77,554,242 (+)	NCBI
Rnor_6.0	4	78,232,455 - 78,237,498 (+)	NCBI
Rnor_5.0	4	142,896,159 - 142,901,182 (+)	NCBI

Sequence:

show sequence

AACCCGGCGCGTGGGGGGAGGTTGGGGACGGGCCTGGCAGTTGTGAACTCGAACCTGCTGCTGT
CGCCGCTGCAGGGCGGGGAACCGGCCGCAGAGGCCGGCTTGGTGCTCTATGGATGGGCGCCGCG
TCCCTGCAGAGCACGCGGGAGAGTTTTCTCTGACATCCGGGGGCTACCGAAGTGTGGGCCGAAG
CAGGCGCTGCAGCAGAAGTATCCCCAGGAACATCCCCAGAAGGAGCTGGAAAAAGCCTCATCCC
CAGCTCTGCAGTCTTCAGGAGGAAGAACCGATGCTGGAACGGCGCTGCAGGGGCCCCACGGCCA
TGGGCCCAGCCCATCCCTGGCTTTTTTCTGGGCCCTCCCAGGAGTCCTCCCAGCCCAACAGAGG
GTTGAGGTATCAAGGCAAATCAGTAGCACAGCCAGGAGGCCCAGCCCCAGTCAAGGTCCATCGT
TGTGCCCACTGTCGGAAGCGTTTCCCAGGCTGGGTGGCCCTGTGGCTTCACACTCGGCGGTGCC
AGGCCCGGCTGCCTCTGCCCTGCCATGAGTGCAACCAGCGCTTTCGCCACGCCCCCTTCTTAGC
GCTGCATCTTCAGGTTCATGCTTCTGCAGTCCCTGACCTGGGTTTCATCTGCCACCTATGTGGG
CATAGCTTCCGAGGCTGGGTAGCCCTGGTTCTGCATCTGCGGGCTCACTCGGCTTCAAAGAGGC
CCATCACTTGCCCTGAATGCAACAAACGCTTCTGGCGACAAAAACAGCTTCGAGCTCACCTGCG
GAGGTGCCAGCCCCCTGCCCCTGAGGCCCGGCCCTTCATATGTGGCAACTGTGGCCGGAGCTTC
GCCCAATGGGACCAGCTCGTTGTTCACAAGAGGGTGCACGTGGCTGAGGCCTTGGAGGAGGCAG
CAGCCAAGGCCCTGGGTCCTCGCCCGCGAGGACGTCCTTCAGTGACTGCTCCCAGGCCTGGTGG
AGATGCTGTGGACCGCCCCTTCCAGTGTGCCTGCTGCGGCAAGCGCTTCCGCCACAAGCCCAAC
CTGATTGCCCACCGCCGCGTGCACACTGGCGAGCGACCACACCAGTGCCCAGAGTGCGGGAAGC
GTTTCACCAACAAGCCCTACCTGACCTCGCACCGCCGTATACATACGGGCGAGAAGCCCTACCC
ATGCACCGAGTGTGGCCGCCGCTTCCGCCACAAACCCAACCTGTTGTCGCACAGTAAAATCCAC
AAGCGCTCAGAGGTCTCAGCGCAGGCTGCCTCCCACACCGGGAGTCACTTGATTGCAGCGGAGC
CTATGGCACAACCTGCGCTTGGGGTGCCCCTGGGGTCCCTGAGGACCCCGGCCGAGGCACCTGC
GTCCCTGCATAGCTGCACTGACTGCGGCCGCAGCTTCCGGCTGGAGCGTTTCCTGCGGCTACAC
CAGCGGCAGCACACAGGCGAGAGGCCCTTCACCTGCACAGAGTGTGGCAAGAACTTCGGCAAGA
AAACGCACCTGGTGGCGCACTCACGCGTGCACTCGGGCGAGCGGCCCTTTGCCTGCGAGGAGTG
TGGTCGCCGTTTCTCACAGGGCAGCCACCTGGCAGCCCACCGGCGCGACCATGCACCAGAGAGA
CCCTTTGTGTGCCCAGACTGCGGCAAGGCTTTCCGCCACAAGCCCTACCTGGCCGCGCACCGAC
GCATCCACACAGGCGAGAAGCCCTATGTGTGTCCCGACTGTGGCAAAGCTTTCAGCCAGAAGTC
CAACCTGGTGTCCCACCGGCGCATCCACACAGGTGAGCGGCCCTACGCCTGCCCCGACTGTGAT
CGCAGCTTCAGTCAGAAGTCCAACCTTATCACACACCGGAAGAGCCACATCCGGGATGGCGCCT
TCTGCTGTGCCATCTGCGGCCAGACCTTTGACGATGAGGACCGTCTCTTGATGCACCAGAAGAA
GCACGATGCCTGAGAGGGACCCAGGAAGACAGGCCTAGATGTCCTTGGCAACAGGGTGTCAGTG
GCCTGGGTGGGGTACCTACACTGACACTGTTAGAGGGACAGGCGGAGATCCCAGAGGGATAGAG
GAGACAGTGATCTGGGCTCTGTTTAGGAATGGACTTTCTCCCAGGTGACCAGGGAACCCATTTT
AGAATGCCGGGATCTGGGTTTGAGCTAGTCAGGCCCCCAGCTGGTTTTTCTAAAGGTCAACTGA
GACTGCCCTGTACCCTGGAAAAAATAGCAATAGCAGCCCCATCTACCCTTTGAGTCCTCAACTA
GCCACCAGTGGGAAGGGAGCCACTCCATCCTCTGGTGTTAACGCCTTAATGTCCCCAGTCTTTA
CTATGAGTTACTTCAGGTCTTTTTTTTTTTTTTTTTTTTTTTAAAGTAGGTGTGGTATAGTCGT
TAGCAAATGAATCCTGGAGCAGGGAAAATGGGCCAGCCGGCTGCACCTTGGTGAACCTGCTGGC
TTGTTAGGCAGCAGCAGACATGAAGCTGAGCTGTTTGTTTCCTTCCTTCCTTCCTTCCTTCCTT
CCTTCCTTCCTTCCTTTTTTCTTTTTTACCAGAACCTTTCTGCAATGCCTCCAGCAGAGGTACC
CAGATGTGTAGCGACCCATCCACAGCTAGCAATTCCATCTCTTTTGTGCATATTATCCTCCCAG
GGCATTTATTTACTCCTTTACCTGCCTGGCTTTTTATCTGCCCGCTCTTCCCCAAATATACGCC
TTCCTGGTGATTTTGTTTAAACCCCTGACCCTCCCCAACTCTTTTCAGAGCTTCAGGGGTTATG
TGAAAGACTAGCTGGGGGGTTGGCTGCAGGGAAAGTCCTGGGTAGATTTCCTTTTTAAGGTTTC
CAGGGTATAGATGCCAGCCTCTACCCATGCACCTGGGTGCTGGGTCACCGTTACCTCCAGAAGG
CATTGCTTCTACTGTCTAATTGTTAGAAATTCTTACAAGGATTGGGTTCTGCTTTCCTATGACT
TCTGCCTACTGGGTCTTGTTTTGTTCCTTGGATCGAAACGTAACAACCATTTACCTTCCTTTAC
AAACTAGAGAATAAAGATTTGGTTTTAGAA

hide sequence

RefSeq Acc Id:

XM_006236427 ⟹ XP_006236489

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	77,548,724 - 77,554,242 (+)	NCBI
Rnor_6.0	4	78,232,455 - 78,237,498 (+)	NCBI
Rnor_5.0	4	142,896,159 - 142,901,182 (+)	NCBI

Sequence:

show sequence

AACCCGGCGCGTGGGGGGAGGTTGGGGACGGGCCTGGCAGTTGTGAACTCGAACCTGCTGCTGT
CGCCGCTGCAGGGCGGGGAACCGGCCGCAGAGGCCGGCTTGGTGCTCTATGGATGGGCGCCGCG
TCCCTGCAGAGCACGCGGGAGAGGTAAGGCTGACCTCTCAGCAGTTAGAGGTCTGAGCTCTGCC
ATGGGGATAGGGATGTCTTTATTGCTACAGTTTTCTCTGACATCCGGGGGCTACCGAAGTGTGG
GCCGAAGCAGGCGCTGCAGCAGAAGTATCCCCAGGAACATCCCCAGAAGGAGCTGGAAAAAGCC
TCATCCCCAGCTCTGCAGTCTTCAGGCAGAGGAAGAACCGATGCTGGAACGGCGCTGCAGGGGC
CCCACGGCCATGGGCCCAGCCCATCCCTGGCTTTTTTCTGGGCCCTCCCAGGAGTCCTCCCAGC
CCAACAGAGGGTTGAGGTATCAAGGCAAATCAGTAGCACAGCCAGGAGGCCCAGCCCCAGTCAA
GGTCCATCGTTGTGCCCACTGTCGGAAGCGTTTCCCAGGCTGGGTGGCCCTGTGGCTTCACACT
CGGCGGTGCCAGGCCCGGCTGCCTCTGCCCTGCCATGAGTGCAACCAGCGCTTTCGCCACGCCC
CCTTCTTAGCGCTGCATCTTCAGGTTCATGCTTCTGCAGTCCCTGACCTGGGTTTCATCTGCCA
CCTATGTGGGCATAGCTTCCGAGGCTGGGTAGCCCTGGTTCTGCATCTGCGGGCTCACTCGGCT
TCAAAGAGGCCCATCACTTGCCCTGAATGCAACAAACGCTTCTGGCGACAAAAACAGCTTCGAG
CTCACCTGCGGAGGTGCCAGCCCCCTGCCCCTGAGGCCCGGCCCTTCATATGTGGCAACTGTGG
CCGGAGCTTCGCCCAATGGGACCAGCTCGTTGTTCACAAGAGGGTGCACGTGGCTGAGGCCTTG
GAGGAGGCAGCAGCCAAGGCCCTGGGTCCTCGCCCGCGAGGACGTCCTTCAGTGACTGCTCCCA
GGCCTGGTGGAGATGCTGTGGACCGCCCCTTCCAGTGTGCCTGCTGCGGCAAGCGCTTCCGCCA
CAAGCCCAACCTGATTGCCCACCGCCGCGTGCACACTGGCGAGCGACCACACCAGTGCCCAGAG
TGCGGGAAGCGTTTCACCAACAAGCCCTACCTGACCTCGCACCGCCGTATACATACGGGCGAGA
AGCCCTACCCATGCACCGAGTGTGGCCGCCGCTTCCGCCACAAACCCAACCTGTTGTCGCACAG
TAAAATCCACAAGCGCTCAGAGGTCTCAGCGCAGGCTGCCTCCCACACCGGGAGTCACTTGATT
GCAGCGGAGCCTATGGCACAACCTGCGCTTGGGGTGCCCCTGGGGTCCCTGAGGACCCCGGCCG
AGGCACCTGCGTCCCTGCATAGCTGCACTGACTGCGGCCGCAGCTTCCGGCTGGAGCGTTTCCT
GCGGCTACACCAGCGGCAGCACACAGGCGAGAGGCCCTTCACCTGCACAGAGTGTGGCAAGAAC
TTCGGCAAGAAAACGCACCTGGTGGCGCACTCACGCGTGCACTCGGGCGAGCGGCCCTTTGCCT
GCGAGGAGTGTGGTCGCCGTTTCTCACAGGGCAGCCACCTGGCAGCCCACCGGCGCGACCATGC
ACCAGAGAGACCCTTTGTGTGCCCAGACTGCGGCAAGGCTTTCCGCCACAAGCCCTACCTGGCC
GCGCACCGACGCATCCACACAGGCGAGAAGCCCTATGTGTGTCCCGACTGTGGCAAAGCTTTCA
GCCAGAAGTCCAACCTGGTGTCCCACCGGCGCATCCACACAGGTGAGCGGCCCTACGCCTGCCC
CGACTGTGATCGCAGCTTCAGTCAGAAGTCCAACCTTATCACACACCGGAAGAGCCACATCCGG
GATGGCGCCTTCTGCTGTGCCATCTGCGGCCAGACCTTTGACGATGAGGACCGTCTCTTGATGC
ACCAGAAGAAGCACGATGCCTGAGAGGGACCCAGGAAGACAGGCCTAGATGTCCTTGGCAACAG
GGTGTCAGTGGCCTGGGTGGGGTACCTACACTGACACTGTTAGAGGGACAGGCGGAGATCCCAG
AGGGATAGAGGAGACAGTGATCTGGGCTCTGTTTAGGAATGGACTTTCTCCCAGGTGACCAGGG
AACCCATTTTAGAATGCCGGGATCTGGGTTTGAGCTAGTCAGGCCCCCAGCTGGTTTTTCTAAA
GGTCAACTGAGACTGCCCTGTACCCTGGAAAAAATAGCAATAGCAGCCCCATCTACCCTTTGAG
TCCTCAACTAGCCACCAGTGGGAAGGGAGCCACTCCATCCTCTGGTGTTAACGCCTTAATGTCC
CCAGTCTTTACTATGAGTTACTTCAGGTCTTTTTTTTTTTTTTTTTTTTTTTAAAGTAGGTGTG
GTATAGTCGTTAGCAAATGAATCCTGGAGCAGGGAAAATGGGCCAGCCGGCTGCACCTTGGTGA
ACCTGCTGGCTTGTTAGGCAGCAGCAGACATGAAGCTGAGCTGTTTGTTTCCTTCCTTCCTTCC
TTCCTTCCTTCCTTCCTTCCTTCCTTTTTTCTTTTTTACCAGAACCTTTCTGCAATGCCTCCAG
CAGAGGTACCCAGATGTGTAGCGACCCATCCACAGCTAGCAATTCCATCTCTTTTGTGCATATT
ATCCTCCCAGGGCATTTATTTACTCCTTTACCTGCCTGGCTTTTTATCTGCCCGCTCTTCCCCA
AATATACGCCTTCCTGGTGATTTTGTTTAAACCCCTGACCCTCCCCAACTCTTTTCAGAGCTTC
AGGGGTTATGTGAAAGACTAGCTGGGGGGTTGGCTGCAGGGAAAGTCCTGGGTAGATTTCCTTT
TTAAGGTTTCCAGGGTATAGATGCCAGCCTCTACCCATGCACCTGGGTGCTGGGTCACCGTTAC
CTCCAGAAGGCATTGCTTCTACTGTCTAATTGTTAGAAATTCTTACAAGGATTGGGTTCTGCTT
TCCTATGACTTCTGCCTACTGGGTCTTGTTTTGTTCCTTGGATCGAAACGTAACAACCATTTAC
CTTCCTTTACAAACTAGAGAATAAAGATTTGGTTTTAGAA

hide sequence

RefSeq Acc Id:

XM_006236428 ⟹ XP_006236490

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	77,548,725 - 77,554,242 (+)	NCBI
Rnor_6.0	4	78,232,456 - 78,237,498 (+)	NCBI
Rnor_5.0	4	142,896,159 - 142,901,182 (+)	NCBI

Sequence:

show sequence

ACCCGGCGCGTGGGGGGAGGTTGGGGACGGGCCTGGCAGTTGTGAACTCGAACCTGCTGCTGTC
GCCGCTGCAGGGCGGGGAACCGGCCGCAGAGGCCGGCTTGGTGCTCTATGGATGGGCGCCGCGT
CCCTGCAGAGCACGCGGGAGAGCAGAGGAAGAACCGATGCTGGAACGGCGCTGCAGGGGCCCCA
CGGCCATGGGCCCAGCCCATCCCTGGCTTTTTTCTGGGCCCTCCCAGGAGTCCTCCCAGCCCAA
CAGAGGGTTGAGGTATCAAGGCAAATCAGTAGCACAGCCAGGAGGCCCAGCCCCAGTCAAGGTC
CATCGTTGTGCCCACTGTCGGAAGCGTTTCCCAGGCTGGGTGGCCCTGTGGCTTCACACTCGGC
GGTGCCAGGCCCGGCTGCCTCTGCCCTGCCATGAGTGCAACCAGCGCTTTCGCCACGCCCCCTT
CTTAGCGCTGCATCTTCAGGTTCATGCTTCTGCAGTCCCTGACCTGGGTTTCATCTGCCACCTA
TGTGGGCATAGCTTCCGAGGCTGGGTAGCCCTGGTTCTGCATCTGCGGGCTCACTCGGCTTCAA
AGAGGCCCATCACTTGCCCTGAATGCAACAAACGCTTCTGGCGACAAAAACAGCTTCGAGCTCA
CCTGCGGAGGTGCCAGCCCCCTGCCCCTGAGGCCCGGCCCTTCATATGTGGCAACTGTGGCCGG
AGCTTCGCCCAATGGGACCAGCTCGTTGTTCACAAGAGGGTGCACGTGGCTGAGGCCTTGGAGG
AGGCAGCAGCCAAGGCCCTGGGTCCTCGCCCGCGAGGACGTCCTTCAGTGACTGCTCCCAGGCC
TGGTGGAGATGCTGTGGACCGCCCCTTCCAGTGTGCCTGCTGCGGCAAGCGCTTCCGCCACAAG
CCCAACCTGATTGCCCACCGCCGCGTGCACACTGGCGAGCGACCACACCAGTGCCCAGAGTGCG
GGAAGCGTTTCACCAACAAGCCCTACCTGACCTCGCACCGCCGTATACATACGGGCGAGAAGCC
CTACCCATGCACCGAGTGTGGCCGCCGCTTCCGCCACAAACCCAACCTGTTGTCGCACAGTAAA
ATCCACAAGCGCTCAGAGGTCTCAGCGCAGGCTGCCTCCCACACCGGGAGTCACTTGATTGCAG
CGGAGCCTATGGCACAACCTGCGCTTGGGGTGCCCCTGGGGTCCCTGAGGACCCCGGCCGAGGC
ACCTGCGTCCCTGCATAGCTGCACTGACTGCGGCCGCAGCTTCCGGCTGGAGCGTTTCCTGCGG
CTACACCAGCGGCAGCACACAGGCGAGAGGCCCTTCACCTGCACAGAGTGTGGCAAGAACTTCG
GCAAGAAAACGCACCTGGTGGCGCACTCACGCGTGCACTCGGGCGAGCGGCCCTTTGCCTGCGA
GGAGTGTGGTCGCCGTTTCTCACAGGGCAGCCACCTGGCAGCCCACCGGCGCGACCATGCACCA
GAGAGACCCTTTGTGTGCCCAGACTGCGGCAAGGCTTTCCGCCACAAGCCCTACCTGGCCGCGC
ACCGACGCATCCACACAGGCGAGAAGCCCTATGTGTGTCCCGACTGTGGCAAAGCTTTCAGCCA
GAAGTCCAACCTGGTGTCCCACCGGCGCATCCACACAGGTGAGCGGCCCTACGCCTGCCCCGAC
TGTGATCGCAGCTTCAGTCAGAAGTCCAACCTTATCACACACCGGAAGAGCCACATCCGGGATG
GCGCCTTCTGCTGTGCCATCTGCGGCCAGACCTTTGACGATGAGGACCGTCTCTTGATGCACCA
GAAGAAGCACGATGCCTGAGAGGGACCCAGGAAGACAGGCCTAGATGTCCTTGGCAACAGGGTG
TCAGTGGCCTGGGTGGGGTACCTACACTGACACTGTTAGAGGGACAGGCGGAGATCCCAGAGGG
ATAGAGGAGACAGTGATCTGGGCTCTGTTTAGGAATGGACTTTCTCCCAGGTGACCAGGGAACC
CATTTTAGAATGCCGGGATCTGGGTTTGAGCTAGTCAGGCCCCCAGCTGGTTTTTCTAAAGGTC
AACTGAGACTGCCCTGTACCCTGGAAAAAATAGCAATAGCAGCCCCATCTACCCTTTGAGTCCT
CAACTAGCCACCAGTGGGAAGGGAGCCACTCCATCCTCTGGTGTTAACGCCTTAATGTCCCCAG
TCTTTACTATGAGTTACTTCAGGTCTTTTTTTTTTTTTTTTTTTTTTTAAAGTAGGTGTGGTAT
AGTCGTTAGCAAATGAATCCTGGAGCAGGGAAAATGGGCCAGCCGGCTGCACCTTGGTGAACCT
GCTGGCTTGTTAGGCAGCAGCAGACATGAAGCTGAGCTGTTTGTTTCCTTCCTTCCTTCCTTCC
TTCCTTCCTTCCTTCCTTCCTTTTTTCTTTTTTACCAGAACCTTTCTGCAATGCCTCCAGCAGA
GGTACCCAGATGTGTAGCGACCCATCCACAGCTAGCAATTCCATCTCTTTTGTGCATATTATCC
TCCCAGGGCATTTATTTACTCCTTTACCTGCCTGGCTTTTTATCTGCCCGCTCTTCCCCAAATA
TACGCCTTCCTGGTGATTTTGTTTAAACCCCTGACCCTCCCCAACTCTTTTCAGAGCTTCAGGG
GTTATGTGAAAGACTAGCTGGGGGGTTGGCTGCAGGGAAAGTCCTGGGTAGATTTCCTTTTTAA
GGTTTCCAGGGTATAGATGCCAGCCTCTACCCATGCACCTGGGTGCTGGGTCACCGTTACCTCC
AGAAGGCATTGCTTCTACTGTCTAATTGTTAGAAATTCTTACAAGGATTGGGTTCTGCTTTCCT
ATGACTTCTGCCTACTGGGTCTTGTTTTGTTCCTTGGATCGAAACGTAACAACCATTTACCTTC
CTTTACAAACTAGAGAATAAAGATTTGGTTTTAGAA

hide sequence

RefSeq Acc Id:

XM_006236429 ⟹ XP_006236491

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	77,548,725 - 77,554,242 (+)	NCBI
Rnor_6.0	4	78,232,456 - 78,237,498 (+)	NCBI
Rnor_5.0	4	142,896,159 - 142,901,182 (+)	NCBI

Sequence:

show sequence

ACCCGGCGCGTGGGGGGAGGTTGGGGACGGGCCTGGCAGTTGTGAACTCGAACCTGCTGCTGTC
GCCGCTGCAGGGCGGGGAACCGGCCGCAGAGGCCGGCTTGGTGCTCTATGGATGGGCGCCGCGT
CCCTGCAGAGCACGCGGGAGAGAGGAAGAACCGATGCTGGAACGGCGCTGCAGGGGCCCCACGG
CCATGGGCCCAGCCCATCCCTGGCTTTTTTCTGGGCCCTCCCAGGAGTCCTCCCAGCCCAACAG
AGGGTTGAGGTATCAAGGCAAATCAGTAGCACAGCCAGGAGGCCCAGCCCCAGTCAAGGTCCAT
CGTTGTGCCCACTGTCGGAAGCGTTTCCCAGGCTGGGTGGCCCTGTGGCTTCACACTCGGCGGT
GCCAGGCCCGGCTGCCTCTGCCCTGCCATGAGTGCAACCAGCGCTTTCGCCACGCCCCCTTCTT
AGCGCTGCATCTTCAGGTTCATGCTTCTGCAGTCCCTGACCTGGGTTTCATCTGCCACCTATGT
GGGCATAGCTTCCGAGGCTGGGTAGCCCTGGTTCTGCATCTGCGGGCTCACTCGGCTTCAAAGA
GGCCCATCACTTGCCCTGAATGCAACAAACGCTTCTGGCGACAAAAACAGCTTCGAGCTCACCT
GCGGAGGTGCCAGCCCCCTGCCCCTGAGGCCCGGCCCTTCATATGTGGCAACTGTGGCCGGAGC
TTCGCCCAATGGGACCAGCTCGTTGTTCACAAGAGGGTGCACGTGGCTGAGGCCTTGGAGGAGG
CAGCAGCCAAGGCCCTGGGTCCTCGCCCGCGAGGACGTCCTTCAGTGACTGCTCCCAGGCCTGG
TGGAGATGCTGTGGACCGCCCCTTCCAGTGTGCCTGCTGCGGCAAGCGCTTCCGCCACAAGCCC
AACCTGATTGCCCACCGCCGCGTGCACACTGGCGAGCGACCACACCAGTGCCCAGAGTGCGGGA
AGCGTTTCACCAACAAGCCCTACCTGACCTCGCACCGCCGTATACATACGGGCGAGAAGCCCTA
CCCATGCACCGAGTGTGGCCGCCGCTTCCGCCACAAACCCAACCTGTTGTCGCACAGTAAAATC
CACAAGCGCTCAGAGGTCTCAGCGCAGGCTGCCTCCCACACCGGGAGTCACTTGATTGCAGCGG
AGCCTATGGCACAACCTGCGCTTGGGGTGCCCCTGGGGTCCCTGAGGACCCCGGCCGAGGCACC
TGCGTCCCTGCATAGCTGCACTGACTGCGGCCGCAGCTTCCGGCTGGAGCGTTTCCTGCGGCTA
CACCAGCGGCAGCACACAGGCGAGAGGCCCTTCACCTGCACAGAGTGTGGCAAGAACTTCGGCA
AGAAAACGCACCTGGTGGCGCACTCACGCGTGCACTCGGGCGAGCGGCCCTTTGCCTGCGAGGA
GTGTGGTCGCCGTTTCTCACAGGGCAGCCACCTGGCAGCCCACCGGCGCGACCATGCACCAGAG
AGACCCTTTGTGTGCCCAGACTGCGGCAAGGCTTTCCGCCACAAGCCCTACCTGGCCGCGCACC
GACGCATCCACACAGGCGAGAAGCCCTATGTGTGTCCCGACTGTGGCAAAGCTTTCAGCCAGAA
GTCCAACCTGGTGTCCCACCGGCGCATCCACACAGGTGAGCGGCCCTACGCCTGCCCCGACTGT
GATCGCAGCTTCAGTCAGAAGTCCAACCTTATCACACACCGGAAGAGCCACATCCGGGATGGCG
CCTTCTGCTGTGCCATCTGCGGCCAGACCTTTGACGATGAGGACCGTCTCTTGATGCACCAGAA
GAAGCACGATGCCTGAGAGGGACCCAGGAAGACAGGCCTAGATGTCCTTGGCAACAGGGTGTCA
GTGGCCTGGGTGGGGTACCTACACTGACACTGTTAGAGGGACAGGCGGAGATCCCAGAGGGATA
GAGGAGACAGTGATCTGGGCTCTGTTTAGGAATGGACTTTCTCCCAGGTGACCAGGGAACCCAT
TTTAGAATGCCGGGATCTGGGTTTGAGCTAGTCAGGCCCCCAGCTGGTTTTTCTAAAGGTCAAC
TGAGACTGCCCTGTACCCTGGAAAAAATAGCAATAGCAGCCCCATCTACCCTTTGAGTCCTCAA
CTAGCCACCAGTGGGAAGGGAGCCACTCCATCCTCTGGTGTTAACGCCTTAATGTCCCCAGTCT
TTACTATGAGTTACTTCAGGTCTTTTTTTTTTTTTTTTTTTTTTTAAAGTAGGTGTGGTATAGT
CGTTAGCAAATGAATCCTGGAGCAGGGAAAATGGGCCAGCCGGCTGCACCTTGGTGAACCTGCT
GGCTTGTTAGGCAGCAGCAGACATGAAGCTGAGCTGTTTGTTTCCTTCCTTCCTTCCTTCCTTC
CTTCCTTCCTTCCTTCCTTTTTTCTTTTTTACCAGAACCTTTCTGCAATGCCTCCAGCAGAGGT
ACCCAGATGTGTAGCGACCCATCCACAGCTAGCAATTCCATCTCTTTTGTGCATATTATCCTCC
CAGGGCATTTATTTACTCCTTTACCTGCCTGGCTTTTTATCTGCCCGCTCTTCCCCAAATATAC
GCCTTCCTGGTGATTTTGTTTAAACCCCTGACCCTCCCCAACTCTTTTCAGAGCTTCAGGGGTT
ATGTGAAAGACTAGCTGGGGGGTTGGCTGCAGGGAAAGTCCTGGGTAGATTTCCTTTTTAAGGT
TTCCAGGGTATAGATGCCAGCCTCTACCCATGCACCTGGGTGCTGGGTCACCGTTACCTCCAGA
AGGCATTGCTTCTACTGTCTAATTGTTAGAAATTCTTACAAGGATTGGGTTCTGCTTTCCTATG
ACTTCTGCCTACTGGGTCTTGTTTTGTTCCTTGGATCGAAACGTAACAACCATTTACCTTCCTT
TACAAACTAGAGAATAAAGATTTGGTTTTAGAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001005893	(Get FASTA)	NCBI Sequence Viewer
	XP_006236485	(Get FASTA)	NCBI Sequence Viewer
	XP_006236486	(Get FASTA)	NCBI Sequence Viewer
	XP_006236487	(Get FASTA)	NCBI Sequence Viewer
	XP_006236488	(Get FASTA)	NCBI Sequence Viewer
	XP_006236489	(Get FASTA)	NCBI Sequence Viewer
	XP_006236490	(Get FASTA)	NCBI Sequence Viewer
	XP_006236491	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAT99579	(Get FASTA)	NCBI Sequence Viewer
	Q68H95	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001005893 ⟸ NM_001005893

- UniProtKB:

Q68H95 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MLERRCRGPTAMGPAHPWLFSGPSQESSQPNRGLRYQGKSVAQPGGPAPVKVHRCAHCRKRFPG
WVALWLHTRRCQARLPLPCHECNQRFRHAPFLALHLQVHASAVPDLGFICHLCGHSFRGWVALV
LHLRAHSASKRPITCPECNKRFWRQKQLRAHLRRCQPPAPEARPFICGNCGRSFAQWDQLVVHK
RVHVAEALEEAAAKALGPRPRGRPSVTAPRPGGDAVDRPFQCACCGKRFRHKPNLIAHRRVHTG
ERPHQCPECGKRFTNKPYLTSHRRIHTGEKPYPCTECGRRFRHKPNLLSHSKIHKRSEVSAQAA
SHTGSHLIAAEPMAQPALGVPLGSLRTPAEAPASLHSCTDCGRSFRLERFLRLHQRQHTGERPF
TCTECGKNFGKKTHLVAHSRVHSGERPFACEECGRRFSQGSHLAAHRRDHAPERPFVCPDCGKA
FRHKPYLAAHRRIHTGEKPYVCPDCGKAFSQKSNLVSHRRIHTGERPYACPDCDRSFSQKSNLI
THRKSHIRDGAFCCAICGQTFDDEDRLLMHQKKHDA

hide sequence

RefSeq Acc Id:

XP_006236487 ⟸ XM_006236425

- Peptide Label:

isoform X3

- Sequence:

show sequence

MDGRRVPAEHAGEFSLTSGGYRSVGRSRRCSRSIPRNIPRRSWKKPHPQLCSLQAEEEPMLERR
CRGPTAMGPAHPWLFSGPSQESSQPNRGLRYQGKSVAQPGGPAPVKVHRCAHCRKRFPGWVALW
LHTRRCQARLPLPCHECNQRFRHAPFLALHLQVHASAVPDLGFICHLCGHSFRGWVALVLHLRA
HSASKRPITCPECNKRFWRQKQLRAHLRRCQPPAPEARPFICGNCGRSFAQWDQLVVHKRVHVA
EALEEAAAKALGPRPRGRPSVTAPRPGGDAVDRPFQCACCGKRFRHKPNLIAHRRVHTGERPHQ
CPECGKRFTNKPYLTSHRRIHTGEKPYPCTECGRRFRHKPNLLSHSKIHKRSEVSAQAASHTGS
HLIAAEPMAQPALGVPLGSLRTPAEAPASLHSCTDCGRSFRLERFLRLHQRQHTGERPFTCTEC
GKNFGKKTHLVAHSRVHSGERPFACEECGRRFSQGSHLAAHRRDHAPERPFVCPDCGKAFRHKP
YLAAHRRIHTGEKPYVCPDCGKAFSQKSNLVSHRRIHTGERPYACPDCDRSFSQKSNLITHRKS
HIRDGAFCCAICGQTFDDEDRLLMHQKKHDA

hide sequence

RefSeq Acc Id:

XP_006236488 ⟸ XM_006236426

- Peptide Label:

isoform X4

- Sequence:

show sequence

MDGRRVPAEHAGEFSLTSGGYRSVGRSRRCSRSIPRNIPRRSWKKPHPQLCSLQEEEPMLERRC
RGPTAMGPAHPWLFSGPSQESSQPNRGLRYQGKSVAQPGGPAPVKVHRCAHCRKRFPGWVALWL
HTRRCQARLPLPCHECNQRFRHAPFLALHLQVHASAVPDLGFICHLCGHSFRGWVALVLHLRAH
SASKRPITCPECNKRFWRQKQLRAHLRRCQPPAPEARPFICGNCGRSFAQWDQLVVHKRVHVAE
ALEEAAAKALGPRPRGRPSVTAPRPGGDAVDRPFQCACCGKRFRHKPNLIAHRRVHTGERPHQC
PECGKRFTNKPYLTSHRRIHTGEKPYPCTECGRRFRHKPNLLSHSKIHKRSEVSAQAASHTGSH
LIAAEPMAQPALGVPLGSLRTPAEAPASLHSCTDCGRSFRLERFLRLHQRQHTGERPFTCTECG
KNFGKKTHLVAHSRVHSGERPFACEECGRRFSQGSHLAAHRRDHAPERPFVCPDCGKAFRHKPY
LAAHRRIHTGEKPYVCPDCGKAFSQKSNLVSHRRIHTGERPYACPDCDRSFSQKSNLITHRKSH
IRDGAFCCAICGQTFDDEDRLLMHQKKHDA

hide sequence

RefSeq Acc Id:	XP_006236491 ⟸ XM_006236429
- Peptide Label:	isoform X6
- UniProtKB:	Q68H95 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MLERRCRGPTAMGPAHPWLFSGPSQESSQPNRGLRYQGKSVAQPGGPAPVKVHRCAHCRKRFPG WVALWLHTRRCQARLPLPCHECNQRFRHAPFLALHLQVHASAVPDLGFICHLCGHSFRGWVALV LHLRAHSASKRPITCPECNKRFWRQKQLRAHLRRCQPPAPEARPFICGNCGRSFAQWDQLVVHK RVHVAEALEEAAAKALGPRPRGRPSVTAPRPGGDAVDRPFQCACCGKRFRHKPNLIAHRRVHTG ERPHQCPECGKRFTNKPYLTSHRRIHTGEKPYPCTECGRRFRHKPNLLSHSKIHKRSEVSAQAA SHTGSHLIAAEPMAQPALGVPLGSLRTPAEAPASLHSCTDCGRSFRLERFLRLHQRQHTGERPF TCTECGKNFGKKTHLVAHSRVHSGERPFACEECGRRFSQGSHLAAHRRDHAPERPFVCPDCGKA FRHKPYLAAHRRIHTGEKPYVCPDCGKAFSQKSNLVSHRRIHTGERPYACPDCDRSFSQKSNLI THRKSHIRDGAFCCAICGQTFDDEDRLLMHQKKHDA hide sequence

RefSeq Acc Id:	XP_006236489 ⟸ XM_006236427
- Peptide Label:	isoform X5
- UniProtKB:	A0A0H2UHG5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGIGMSLLLQFSLTSGGYRSVGRSRRCSRSIPRNIPRRSWKKPHPQLCSLQAEEEPMLERRCRG PTAMGPAHPWLFSGPSQESSQPNRGLRYQGKSVAQPGGPAPVKVHRCAHCRKRFPGWVALWLHT RRCQARLPLPCHECNQRFRHAPFLALHLQVHASAVPDLGFICHLCGHSFRGWVALVLHLRAHSA SKRPITCPECNKRFWRQKQLRAHLRRCQPPAPEARPFICGNCGRSFAQWDQLVVHKRVHVAEAL EEAAAKALGPRPRGRPSVTAPRPGGDAVDRPFQCACCGKRFRHKPNLIAHRRVHTGERPHQCPE CGKRFTNKPYLTSHRRIHTGEKPYPCTECGRRFRHKPNLLSHSKIHKRSEVSAQAASHTGSHLI AAEPMAQPALGVPLGSLRTPAEAPASLHSCTDCGRSFRLERFLRLHQRQHTGERPFTCTECGKN FGKKTHLVAHSRVHSGERPFACEECGRRFSQGSHLAAHRRDHAPERPFVCPDCGKAFRHKPYLA AHRRIHTGEKPYVCPDCGKAFSQKSNLVSHRRIHTGERPYACPDCDRSFSQKSNLITHRKSHIR DGAFCCAICGQTFDDEDRLLMHQKKHDA hide sequence

RefSeq Acc Id:	XP_006236490 ⟸ XM_006236428
- Peptide Label:	isoform X6
- UniProtKB:	Q68H95 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MLERRCRGPTAMGPAHPWLFSGPSQESSQPNRGLRYQGKSVAQPGGPAPVKVHRCAHCRKRFPG WVALWLHTRRCQARLPLPCHECNQRFRHAPFLALHLQVHASAVPDLGFICHLCGHSFRGWVALV LHLRAHSASKRPITCPECNKRFWRQKQLRAHLRRCQPPAPEARPFICGNCGRSFAQWDQLVVHK RVHVAEALEEAAAKALGPRPRGRPSVTAPRPGGDAVDRPFQCACCGKRFRHKPNLIAHRRVHTG ERPHQCPECGKRFTNKPYLTSHRRIHTGEKPYPCTECGRRFRHKPNLLSHSKIHKRSEVSAQAA SHTGSHLIAAEPMAQPALGVPLGSLRTPAEAPASLHSCTDCGRSFRLERFLRLHQRQHTGERPF TCTECGKNFGKKTHLVAHSRVHSGERPFACEECGRRFSQGSHLAAHRRDHAPERPFVCPDCGKA FRHKPYLAAHRRIHTGEKPYVCPDCGKAFSQKSNLVSHRRIHTGERPYACPDCDRSFSQKSNLI THRKSHIRDGAFCCAICGQTFDDEDRLLMHQKKHDA hide sequence

RefSeq Acc Id:

XP_006236485 ⟸ XM_006236423

- Peptide Label:

isoform X1

- Sequence:

show sequence

MTQTCPGRAQSLTLPFFLPSPGKADLSAVRGLSSAMGIGMSLLLQFSLTSGGYRSVGRSRRCSR
SIPRNIPRRSWKKPHPQLCSLQAEEEPMLERRCRGPTAMGPAHPWLFSGPSQESSQPNRGLRYQ
GKSVAQPGGPAPVKVHRCAHCRKRFPGWVALWLHTRRCQARLPLPCHECNQRFRHAPFLALHLQ
VHASAVPDLGFICHLCGHSFRGWVALVLHLRAHSASKRPITCPECNKRFWRQKQLRAHLRRCQP
PAPEARPFICGNCGRSFAQWDQLVVHKRVHVAEALEEAAAKALGPRPRGRPSVTAPRPGGDAVD
RPFQCACCGKRFRHKPNLIAHRRVHTGERPHQCPECGKRFTNKPYLTSHRRIHTGEKPYPCTEC
GRRFRHKPNLLSHSKIHKRSEVSAQAASHTGSHLIAAEPMAQPALGVPLGSLRTPAEAPASLHS
CTDCGRSFRLERFLRLHQRQHTGERPFTCTECGKNFGKKTHLVAHSRVHSGERPFACEECGRRF
SQGSHLAAHRRDHAPERPFVCPDCGKAFRHKPYLAAHRRIHTGEKPYVCPDCGKAFSQKSNLVS
HRRIHTGERPYACPDCDRSFSQKSNLITHRKSHIRDGAFCCAICGQTFDDEDRLLMHQKKHDA

hide sequence

RefSeq Acc Id:

XP_006236486 ⟸ XM_006236424

- Peptide Label:

isoform X2

- Sequence:

show sequence

MTQTCPGRAQSLTLPFFLPSPGKADLSAVRGLSSAMGIGMSLLLQFSLTSGGYRSVGRSRRCSR
SIPRNIPRRSWKKPHPQLCSLQEEEPMLERRCRGPTAMGPAHPWLFSGPSQESSQPNRGLRYQG
KSVAQPGGPAPVKVHRCAHCRKRFPGWVALWLHTRRCQARLPLPCHECNQRFRHAPFLALHLQV
HASAVPDLGFICHLCGHSFRGWVALVLHLRAHSASKRPITCPECNKRFWRQKQLRAHLRRCQPP
APEARPFICGNCGRSFAQWDQLVVHKRVHVAEALEEAAAKALGPRPRGRPSVTAPRPGGDAVDR
PFQCACCGKRFRHKPNLIAHRRVHTGERPHQCPECGKRFTNKPYLTSHRRIHTGEKPYPCTECG
RRFRHKPNLLSHSKIHKRSEVSAQAASHTGSHLIAAEPMAQPALGVPLGSLRTPAEAPASLHSC
TDCGRSFRLERFLRLHQRQHTGERPFTCTECGKNFGKKTHLVAHSRVHSGERPFACEECGRRFS
QGSHLAAHRRDHAPERPFVCPDCGKAFRHKPYLAAHRRIHTGEKPYVCPDCGKAFSQKSNLVSH
RRIHTGERPYACPDCDRSFSQKSNLITHRKSHIRDGAFCCAICGQTFDDEDRLLMHQKKHDA

hide sequence

RefSeq Acc Id:

ENSRNOP00000011032 ⟸ ENSRNOT00000011032

Protein Domains

C2H2-type

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Damaging Variants

Assembly: Rnor_5.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
4	142899088	142899089	G	A	snv	DA/BklArbNsi (KNAW)

Assembly: RGSC_v3.4

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
4	76689102	76689103	G	A	snv	DA/BklArbNsi (ICAHN)

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1549707	AgrOrtholog
Ensembl Genes	ENSRNOG00000008239	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000011032	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000011032	UniProtKB/TrEMBL
InterPro	REPIN1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Znf_C2H2_type	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:445541	UniProtKB/Swiss-Prot
NCBI Gene	445541	ENTREZGENE
PANTHER	PTHR24406:SF10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	zf-C2H2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Repin1	PhenoGen
PROSITE	ZINC_FINGER_C2H2_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	ZnF_C2H2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF57667	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0H2UHG5	ENTREZGENE, UniProtKB/TrEMBL
	Q68H95	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-09-15	Repin1	replication initiator 1			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar