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Gene: Hoxa1 (homeobox A1) Rattus norvegicus
Symbol: Hoxa1
Name: homeobox A1
RGD ID: 11414885
Description: Predicted to have DNA-binding transcription activator activity, RNA polymerase II-specific; identical protein binding activity; and sequence-specific double-stranded DNA binding activity. Predicted to be involved in several processes, including cellular response to retinoic acid; embryonic organ morphogenesis; and nervous system development. Predicted to localize to nucleus. Human ortholog(s) of this gene implicated in Athabaskan brainstem dysgenesis syndrome and autistic disorder. Orthologous to human HOXA1 (homeobox A1); INTERACTS WITH 17alpha-ethynylestradiol; 2,2',4,4'-Tetrabromodiphenyl ether; alendronic acid.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: homeo box A1; homeobox A1-like; homeobox protein Hox-A1; Hoxa1l; NEWGENE_2812
Homo sapiens (human) : HOXA1 (homeobox A1)  HGNC  Alliance
Mus musculus (house mouse) : Hoxa1 (homeobox A1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Hoxa1 (homeobox A1)
Pan paniscus (bonobo/pygmy chimpanzee) : HOXA1 (homeobox A1)
Canis lupus familiaris (dog) : HOXA1 (homeobox A1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Hoxa1 (homeobox A1)
Sus scrofa (pig) : HOXA1 (homeobox A1)
Chlorocebus sabaeus (African green monkey) : HOXA1 (homeobox A1)
Heterocephalus glaber (naked mole-rat) : Hoxa1 (homeobox A1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Rat AssemblyChrPosition (strand)SourceGenome Browsers
Rnor_6.0482,124,358 - 82,127,182 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl482,125,406 - 82,127,066 (-)EnsemblRnor6.0rn6Rnor6.0
Celera476,147,124 - 76,149,948 (-)NCBICelera
Cytogenetic Map4q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)

Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated


Comparative Map Data
QTLs in Region (Rnor_6.0)


RNA-SEQ Expression


Nucleotide Sequences
Protein Sequences

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
More on Hoxa1
Alliance Gene
Ensembl Gene
JBrowse: rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 11414885
Created: 2016-08-02
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE


RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.