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Gene: Gcfc2 (GC-rich sequence DNA-binding factor 2) Rattus norvegicus
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Symbol: Gcfc2
Name: GC-rich sequence DNA-binding factor 2
RGD ID: 1304792
Description: Predicted to have DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II and spliceosomal complex assembly. Predicted to localize to cytosol and nucleus. Orthologous to human GCFC2 (GC-rich sequence DNA-binding factor 2); INTERACTS WITH acetamide; bisphenol A; fipronil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: GC-rich sequence DNA-binding factor; hypothetical protein LOC312474; LOC312474; RGD1304792; similar to chromosome 2 open reading frame 3; transcription factor 9 (binds GC-rich sequences); uncharacterized protein LOC312474
Orthologs:
Homo sapiens (human) : GCFC2 (GC-rich sequence DNA-binding factor 2)  HGNC  Alliance
Mus musculus (house mouse) : Gcfc2 (GC-rich sequence DNA binding factor 2)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Gcfc2 (GC-rich sequence DNA-binding factor 2)
Pan paniscus (bonobo/pygmy chimpanzee) : GCFC2 (GC-rich sequence DNA-binding factor 2)
Canis lupus familiaris (dog) : GCFC2 (GC-rich sequence DNA-binding factor 2)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Gcfc2 (GC-rich sequence DNA-binding factor 2)
Sus scrofa (pig) : GCFC2 (GC-rich sequence DNA-binding factor 2)
Chlorocebus sabaeus (African green monkey) : GCFC2 (GC-rich sequence DNA-binding factor 2)
Heterocephalus glaber (naked mole-rat) : Gcfc2 (GC-rich sequence DNA-binding factor 2)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.04112,662,556 - 112,700,505 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4112,662,609 - 112,699,711 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04177,350,321 - 177,390,090 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44116,167,383 - 116,204,212 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14116,354,439 - 116,448,696 (+)NCBI
Celera4103,480,083 - 103,516,885 (+)NCBICelera
Cytogenetic Map4q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Gcfc2
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1304792
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.