D4Rat37 Marker Search Result - Rat Genome Database

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Marker: D4Rat37

Symbol: D4Rat37
Previously known as: oxsts7072; R016-C12; R0016-C12; 
RGD ID: 35286
Expected Size: 142 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8494,638,214 - 94,638,356 (+)Marker Load Pipeline
mRatBN7.2493,308,315 - 93,308,457 (+)MAPPERmRatBN7.2
Rnor_6.0493,059,789 - 93,059,930NCBIRnor6.0
Rnor_6.0494,893,106 - 94,893,247NCBIRnor6.0
Rnor_5.04159,682,028 - 159,682,169UniSTSRnor5.0
Rnor_5.04157,857,293 - 157,857,434UniSTSRnor5.0
RGSC_v3.4493,498,679 - 93,498,821RGDRGSC3.4
RGSC_v3.4493,498,680 - 93,498,821UniSTSRGSC3.4
RGSC_v3.1493,743,161 - 93,743,302RGD
Celera488,056,363 - 88,056,504UniSTS
RH 3.4 Map4567.7UniSTS
RH 3.4 Map4567.7RGD
SHRSP x BN Map446.45RGD
SHRSP x BN Map446.45UniSTS
FHH x ACI Map457.99RGD
Cytogenetic Map4q24-q31UniSTS
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  
QTLs:   Anxrr16   Hcar7  
Genes:   Grid2  


Annotation


#
Reference Title
Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. Electronic Submission of SSLP Data Sets Wilder R. Oct.2000. National Institute of Arthritis and Musculoskeletal and Skin Diseases, ARB Rat Genetic Database


 
Forward Primer GGCCTGGACCTGAAAAAGAT
Reverse Primer TCTGGCTAGAAATCAATTTCCC
 
Strain, Expected Size(s)

ACI/N 148 AVN/Orl 148 BBDP/Rhw 148
BBDR/Rhw 148 BC/CpbU 136 BDIX/Han 148
BDVII/Cub 142 BN-Lx/Cub 142 BN/SsNHsd 142
BP/Cub 148 BUF/Pit 148 COP/OlaHsd 148
DA/PitN 148 DON/Melb 154 F344/Pit 154
FHH/Eur 140 GH/Omr 142 GK/KyoSwe 146
IS/Kyo 146 LE/Mol 148 LEW/Pit 148
LH/Mav 154 LN/Mav 154 LOU/CHan 142
M520/N 142 MHS/Gib 148 MNR/N 144
MNRA/N 148 MNS/Gib 152 MR/Pit 148
NEDH/K 148 NP9 148 ODU/N 136
OKA/Wsl 136 OM/Ztm 154 P5C 148
PVG/Pit 146 SD/Rij 148 SHR/OlaHsd 136
SHRSP/Riv 136 SR/Jr 154 SS/Jr 154
WAG/RijKyo 142 WF/Pit 148 WIST/Nhg 148
WKY/OlaHsd 148 WN/N 142 WTC/Kyo 148


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
68368Grid2glutamate ionotropic receptor delta type subunit 249241501993892472Rat
GenBank Nucleotide JH614636.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


1 to 10 of 57 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)485253748148090731Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
1549843Bw53Body weight QTL 530.0001body mass (VT:0001259)body weight gain (CMO:0000420)461697658103194791Rat
1578655Bmd11Bone mineral density QTL 1111femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)490850165135850165Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)426775591168368347Rat
1357342Bw40Body weight QTL 400.001body mass (VT:0001259)body weight (CMO:0000012)476647384117676292Rat
631556Bp135Blood pressure QTL 1350.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)478881294117676292Rat
1358363Sradr3Stress Responsive Adrenal Weight QTL 36.19adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)457486946102486946Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)470362013132642728Rat
70167Bw22Body weight QTL 223.1body mass (VT:0001259)body weight (CMO:0000012)476647384117676292Rat

1 to 10 of 57 rows


Note Type Note Reference
Database
Acc Id
Source(s)
NCBI Gene 387410 UniSTS
  387418 UniSTS
  79220 UniSTS