Tgoln2 (trans-golgi network protein 2) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Tgoln2 (trans-golgi network protein 2) Rattus norvegicus
Analyze
Symbol: Tgoln2
Name: trans-golgi network protein 2
RGD ID: 620445
Description: Predicted to be involved in Golgi to endosome transport. Located in trans-Golgi network. Orthologous to human TGOLN2 (trans-golgi network protein 2); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: MGC108592; Tgn38; Tgoln1; trans-Golgi network integral membrane protein TGN38; trans-golgi network protein; trans-golgi network protein 1; Ttgn1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24104,663,356 - 104,671,208 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4104,663,353 - 104,671,164 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4110,042,265 - 110,050,005 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.04105,817,387 - 105,825,127 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.04104,431,111 - 104,438,865 (-)NCBIRnor_WKY
Rnor_6.04100,475,415 - 100,483,229 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4100,475,416 - 100,483,168 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04165,245,798 - 165,253,551 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44106,110,153 - 106,117,906 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14106,356,599 - 106,362,385 (-)NCBI
Celera493,816,266 - 93,824,018 (-)NCBICelera
Cytogenetic Map4q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,3',5-triiodo-L-thyronine  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
aconitine  (EXP)
acrolein  (ISO)
aflatoxin B1  (EXP)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
amiodarone  (ISO)
ammonium chloride  (EXP)
antirheumatic drug  (ISO)
arsenous acid  (ISO)
benzatropine  (ISO)
benzene  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
cannabidiol  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlordecone  (ISO)
chloroquine  (ISO)
clofibrate  (ISO)
clozapine  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
Cuprizon  (ISO)
cyclosporin A  (ISO)
diarsenic trioxide  (ISO)
dimethoate  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
enzacamene  (ISO)
ethanol  (ISO)
fenvalerate  (EXP)
finasteride  (EXP)
fluoranthene  (ISO)
flurbiprofen  (ISO)
folic acid  (ISO)
gentamycin  (EXP)
haloperidol  (ISO)
lead diacetate  (ISO)
leflunomide  (EXP)
methapyrilene  (EXP)
methimazole  (ISO)
methoxychlor  (ISO)
methyl methanesulfonate  (ISO)
Methylazoxymethanol acetate  (EXP)
nickel sulfate  (ISO)
ozone  (ISO)
paracetamol  (ISO)
phenobarbital  (ISO)
pirinixic acid  (EXP,ISO)
pyrogallol  (ISO)
quercetin  (ISO)
rotenone  (EXP)
selenium atom  (ISO)
silicon dioxide  (EXP)
sodium fluoride  (ISO)
tamibarotene  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone enanthate  (ISO)
tetrachloroethene  (ISO)
tetrachloromethane  (ISO)
thapsigargin  (EXP)
titanium dioxide  (ISO)
torcetrapib  (ISO)
trichloroethene  (EXP)
triptonide  (ISO)
troglitazone  (ISO)
uranium atom  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function
protein binding  (IPI,ISO)

References

References - curated
# Reference Title Reference Citation
1. Functional domain mapping of the clathrin-associated adaptor medium chains mu1 and mu2. Aguilar RC, etal., J Biol Chem. 1997 Oct 24;272(43):27160-6.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. The palmitoyl transferase DHHC2 targets a dynamic membrane cycling pathway: regulation by a C-terminal domain. Greaves J, etal., Mol Biol Cell. 2011 Jun 1;22(11):1887-95. doi: 10.1091/mbc.E10-11-0924. Epub 2011 Apr 6.
4. Identification, sequencing and expression of an integral membrane protein of the trans-Golgi network (TGN38). Luzio JP, etal., Biochem J 1990 Aug 15;270(1):97-102.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
7. Identification, molecular characterization and immunolocalization of an isoform of the trans-Golgi-network (TGN)-specific integral membrane protein TGN38. Reaves B, etal., Biochem J 1992 Apr 15;283 ( Pt 2):313-6.
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Efficient trafficking of TGN38 from the endosome to the trans-Golgi network requires a free hydroxyl group at position 331 in the cytosolic domain. Roquemore EP and Banting G, Mol Biol Cell 1998 Aug;9(8):2125-44.
10. Direct interaction of the trans-Golgi network membrane protein, TGN38, with the F-actin binding protein, neurabin. Stephens DJ and Banting G, J Biol Chem. 1999 Oct 15;274(42):30080-6.
11. Serine 331 and tyrosine 333 are both involved in the interaction between the cytosolic domain of TGN38 and the mu2 subunit of the AP2 clathrin adaptor complex. Stephens DJ, etal., J Biol Chem. 1997 May 30;272(22):14104-9.
Additional References at PubMed
PMID:12477932   PMID:12488345   PMID:15047867   PMID:15306122   PMID:15821732   PMID:16204232   PMID:16751776   PMID:18166528   PMID:21187406   PMID:22456507   PMID:22797923   PMID:22841714  
PMID:23386608   PMID:25002582   PMID:26582200   PMID:27435297   PMID:27655914  


Genomics

Comparative Map Data
Tgoln2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24104,663,356 - 104,671,208 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4104,663,353 - 104,671,164 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4110,042,265 - 110,050,005 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.04105,817,387 - 105,825,127 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.04104,431,111 - 104,438,865 (-)NCBIRnor_WKY
Rnor_6.04100,475,415 - 100,483,229 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4100,475,416 - 100,483,168 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04165,245,798 - 165,253,551 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44106,110,153 - 106,117,906 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14106,356,599 - 106,362,385 (-)NCBI
Celera493,816,266 - 93,824,018 (-)NCBICelera
Cytogenetic Map4q31NCBI
TGOLN2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38285,318,027 - 85,327,989 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl285,318,027 - 85,328,251 (-)EnsemblGRCh38hg38GRCh38
GRCh37285,545,150 - 85,555,112 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36285,398,657 - 85,408,885 (-)NCBINCBI36Build 36hg18NCBI36
Build 34285,456,804 - 85,467,032NCBI
Celera285,373,190 - 85,383,374 (-)NCBICelera
Cytogenetic Map2p11.2NCBI
HuRef285,442,101 - 85,452,375 (-)NCBIHuRef
CHM1_1285,474,875 - 85,485,153 (-)NCBICHM1_1
T2T-CHM13v2.0285,320,018 - 85,329,980 (-)NCBIT2T-CHM13v2.0
Tgoln1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39672,585,403 - 72,593,983 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl672,585,415 - 72,593,983 (-)EnsemblGRCm39 Ensembl
GRCm38672,608,420 - 72,617,000 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl672,608,432 - 72,617,000 (-)EnsemblGRCm38mm10GRCm38
MGSCv37672,558,414 - 72,566,994 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36672,537,929 - 72,546,509 (-)NCBIMGSCv36mm8
Celera674,706,688 - 74,717,943 (-)NCBICelera
Cytogenetic Map6C1NCBI
cM Map632.27NCBI
Tgoln2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554242,122,410 - 2,131,734 (-)NCBIChiLan1.0ChiLan1.0
TGOLN2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A86,922,492 - 86,932,902 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v02A85,370,686 - 85,381,607 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
TGOLN2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11739,681,362 - 39,690,828 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1739,352,913 - 39,362,503 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01740,490,898 - 40,500,485 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11739,558,248 - 39,567,837 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01739,629,880 - 39,639,627 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01740,029,794 - 40,039,382 (-)NCBIUU_Cfam_GSD_1.0
Tgoln2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629279,012,926 - 79,021,406 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049367121,837,235 - 1,845,482 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TGOLN2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1359,416,681 - 59,426,790 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2362,299,087 - 62,303,473 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TGOLN2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11421,828,106 - 21,854,074 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1421,828,194 - 21,835,243 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604590,628,070 - 90,635,955 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tgoln2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474917,787,165 - 17,797,328 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tgoln2
18 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:451
Count of miRNA genes:242
Interacting mature miRNAs:314
Transcripts:ENSRNOT00000019713
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)432583980114627242Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
1300139Hrtrt6Heart rate QTL 62.85heart pumping trait (VT:2000009)heart rate (CMO:0000002)439524264116179656Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)444463720155883716Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)444463908148090542Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)444463908148090542Rat
2312567Glom19Glomerulus QTL 191.90.006kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)445456990146803430Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)450119848146803430Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)456647873149491524Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)456698790126192555Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)459948935154902892Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
1578657Bss12Bone structure and strength QTL 128.9femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)460220938105220938Rat
1578658Bss13Bone structure and strength QTL 138femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)460220938105220938Rat
2300179Bmd50Bone mineral density QTL 505.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)460928534105928534Rat
1549839Bw52Body weight QTL 520.0001body mass (VT:0001259)body weight gain (CMO:0000420)461697658115089733Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)462277855128289560Rat
6478743Anxrr40Anxiety related response QTL 400.83076defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)462753847107753847Rat
6478772Anxrr49Anxiety related response QTL 490.15488defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)462753847107753847Rat
6478684Anxrr30Anxiety related response QTL 300.00087defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)462753847107753847Rat
631651Bp124Blood pressure QTL 1243arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)462879517107879517Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)percent change in mean arterial blood pressure (CMO:0002035)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)percent change in systolic blood pressure (CMO:0000747)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)absolute change in pulse pressure (CMO:0001882)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)462933508114921294Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)464528739157573521Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)470362013132642728Rat
634344Hcar7Hepatocarcinoma resistance QTL 77.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)470808386115808386Rat
634344Hcar7Hepatocarcinoma resistance QTL 77.8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)470808386115808386Rat
631646Stl4Serum triglyceride level QTL 46.50.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)473169846132642728Rat
724522Bp146Blood pressure QTL 1462.20.0021arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)473630210118630210Rat
2302051Pia28Pristane induced arthritis QTL 285.30.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)473630210118630210Rat
70167Bw22Body weight QTL 223.1body mass (VT:0001259)body weight (CMO:0000012)476647384117676292Rat
1357342Bw40Body weight QTL 400.001body mass (VT:0001259)body weight (CMO:0000012)476647384117676292Rat
631662Hcar2Hepatocarcinoma resistance QTL 23.10.0003liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)478878504123878504Rat
631556Bp135Blood pressure QTL 1350.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)478881294117676292Rat
738015Pia9Pristane induced arthritis QTL 94.50.048joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)480694870125694870Rat
2306899Bp338Blood pressure QTL 3380.071arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)481006124120102625Rat
1641919Alc22Alcohol consumption QTL 220.0005drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)481192555126192555Rat
70177Xhs1X-ray hypersensitivity QTL 125.1intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)482798864152731274Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)483428419177635233Rat
634334Xhs3X-ray hypersensitivity QTL 310intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)484728680129854654Rat
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)485253748148090731Rat
12798523Anxrr56Anxiety related response QTL 562.830.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)485253748150276390Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)485379421167139601Rat
61476Aia3Adjuvant induced arthritis QTL 33.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)486730991131730991Rat
1578662Bss15Bone structure and strength QTL 1519.6femur width (VT:1000666)femoral neck width (CMO:0001695)487327165132327165Rat
1578670Bss14Bone structure and strength QTL 1416.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)487327165132327165Rat
1578655Bmd11Bone mineral density QTL 1111femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)490850165135850165Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)493308457167139447Rat
631689Scl4Serum cholesterol level QTL 41.90.008blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)495174120140174120Rat
61434Cia3Collagen induced arthritis QTL 34.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4103194656148194656Rat
2317588Eae27Experimental allergic encephalomyelitis QTL 27nervous system integrity trait (VT:0010566)percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)4103194805112478794Rat

Markers in Region
RH141242  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24104,666,144 - 104,666,326 (+)MAPPERmRatBN7.2
Rnor_6.04100,478,204 - 100,478,385NCBIRnor6.0
Rnor_5.04165,248,587 - 165,248,768UniSTSRnor5.0
RGSC_v3.44106,112,942 - 106,113,123UniSTSRGSC3.4
Celera493,819,055 - 93,819,236UniSTS
Cytogenetic Map4q33UniSTS
RH141921  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24104,668,969 - 104,669,149 (+)MAPPERmRatBN7.2
Rnor_6.04100,481,029 - 100,481,208NCBIRnor6.0
Rnor_5.04165,251,412 - 165,251,591UniSTSRnor5.0
RGSC_v3.44106,115,767 - 106,115,946UniSTSRGSC3.4
Celera493,821,880 - 93,822,059UniSTS
Cytogenetic Map4q33UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000019713   ⟹   ENSRNOP00000019713
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4104,663,357 - 104,671,106 (-)Ensembl
Rnor_6.0 Ensembl4100,475,416 - 100,483,168 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000099476   ⟹   ENSRNOP00000077475
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4104,663,353 - 104,671,164 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000115005   ⟹   ENSRNOP00000096733
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4104,663,357 - 104,671,106 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000117115   ⟹   ENSRNOP00000083644
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4104,663,474 - 104,671,115 (-)Ensembl
RefSeq Acc Id: NM_138840   ⟹   NP_620195
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24104,663,356 - 104,671,106 (-)NCBI
Rnor_6.04100,475,415 - 100,483,168 (-)NCBI
Rnor_5.04165,245,798 - 165,253,551 (-)NCBI
RGSC_v3.44106,110,153 - 106,117,906 (-)RGD
Celera493,816,266 - 93,824,018 (-)RGD
Sequence:
RefSeq Acc Id: XM_017592426   ⟹   XP_017447915
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24104,666,383 - 104,671,208 (-)NCBI
Rnor_6.04100,475,418 - 100,483,229 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_620195   ⟸   NM_138840
- Peptide Label: precursor
- UniProtKB: Q4G0B6 (UniProtKB/Swiss-Prot),   P19814 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017447915   ⟸   XM_017592426
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000019713   ⟸   ENSRNOT00000019713
RefSeq Acc Id: ENSRNOP00000077475   ⟸   ENSRNOT00000099476
RefSeq Acc Id: ENSRNOP00000083644   ⟸   ENSRNOT00000117115
RefSeq Acc Id: ENSRNOP00000096733   ⟸   ENSRNOT00000115005

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P19814-F1-model_v2 AlphaFold P19814 1-357 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693132
Promoter ID:EPDNEW_R3657
Type:multiple initiation site
Name:Tgoln2_1
Description:trans-golgi network protein 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04100,483,180 - 100,483,240EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620445 AgrOrtholog
BioCyc Gene G2FUF-44139 BioCyc
Ensembl Genes ENSRNOG00000014617 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000019713 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000077475.1 UniProtKB/TrEMBL
  ENSRNOP00000083644.1 UniProtKB/TrEMBL
  ENSRNOP00000096733.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000019713 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000099476.1 UniProtKB/TrEMBL
  ENSRNOT00000115005.1 UniProtKB/TrEMBL
  ENSRNOT00000117115.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7382894 IMAGE-MGC_LOAD
KEGG Report rno:192152 UniProtKB/Swiss-Prot
MGC_CLONE MGC:108592 IMAGE-MGC_LOAD
NCBI Gene 192152 ENTREZGENE
PhenoGen Tgoln2 PhenoGen
UniProt A0A8I5Y9J8_RAT UniProtKB/TrEMBL
  A0A8I5ZZM8_RAT UniProtKB/TrEMBL
  A0A8I6AQW2_RAT UniProtKB/TrEMBL
  P19814 ENTREZGENE
  Q4G0B6 ENTREZGENE
  TGON3_RAT UniProtKB/Swiss-Prot
UniProt Secondary Q4G0B6 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-10-16 Tgoln2  trans-golgi network protein 2  Tgoln1  trans-golgi network protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-25 Tgoln1  trans-golgi network protein  Tgoln2  trans-golgi network protein 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Tgoln2  trans-golgi network protein 2    trans-golgi network protein 1  Name updated 1299863 APPROVED
2004-09-10 Tgoln2  trans-golgi network protein 1  Ttgn1    Symbol and Name updated 1299863 APPROVED
2002-08-07 Ttgn1  trans-golgi network protein 1      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_protein glycosylated type I integral membrane protein 724780