Mir196b (microRNA 196b) - Rat Genome Database

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Gene: Mir196b (microRNA 196b) Rattus norvegicus
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Symbol: Mir196b
Name: microRNA 196b
RGD ID: 2314882
Description: Predicted to act upstream of or within miRNA-mediated gene silencing by mRNA destabilization. Orthologous to human MIR196B (microRNA 196b); INTERACTS WITH 3,7-dihydropurine-6-thione; aflatoxin B1; cadmium atom.
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: microRNA mir-196b; microRNA mir-196b-2; rno-mir-196b; rno-mir-196b-1
RGD Orthologs
Human
Mouse
Dog
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8482,661,101 - 82,661,185 (-)NCBIGRCr8
mRatBN7.2481,330,487 - 81,330,571 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl481,330,487 - 81,330,571 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx486,552,297 - 86,552,381 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0482,327,688 - 82,327,772 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0480,754,800 - 80,754,884 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0482,199,056 - 82,199,140 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl482,199,056 - 82,199,140 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04146,865,887 - 146,865,971 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4480,530,379 - 80,530,463 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera476,221,120 - 76,221,204 (-)NCBICelera
Cytogenetic Map4q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
2. MVP-mediated exosomal sorting of miR-193a promotes colon cancer progression. Teng Y, etal., Nat Commun. 2017 Feb 17;8:14448. doi: 10.1038/ncomms14448.
Additional References at PubMed
PMID:15105502   PMID:16381832   PMID:17604727   PMID:20403161   PMID:27695061  


Genomics

Comparative Map Data
Mir196b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8482,661,101 - 82,661,185 (-)NCBIGRCr8
mRatBN7.2481,330,487 - 81,330,571 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl481,330,487 - 81,330,571 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx486,552,297 - 86,552,381 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0482,327,688 - 82,327,772 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0480,754,800 - 80,754,884 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0482,199,056 - 82,199,140 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl482,199,056 - 82,199,140 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04146,865,887 - 146,865,971 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4480,530,379 - 80,530,463 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera476,221,120 - 76,221,204 (-)NCBICelera
Cytogenetic Map4q24NCBI
MIR196B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38727,169,480 - 27,169,563 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl727,169,480 - 27,169,563 (-)EnsemblGRCh38hg38GRCh38
GRCh37727,209,099 - 27,209,182 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36727,175,623 - 27,175,706 (-)NCBINCBI36Build 36hg18NCBI36
Celera727,198,038 - 27,198,121 (-)NCBICelera
Cytogenetic Map7p15.2NCBI
HuRef727,089,520 - 27,089,603 (-)NCBIHuRef
CHM1_1727,208,816 - 27,208,899 (-)NCBICHM1_1
T2T-CHM13v2.0727,305,489 - 27,305,572 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2727,260,284 - 27,260,367 (-)NCBI
Mir196b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39652,207,061 - 52,207,145 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl652,207,061 - 52,207,145 (-)EnsemblGRCm39 Ensembl
GRCm38652,230,081 - 52,230,165 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl652,230,081 - 52,230,165 (-)EnsemblGRCm38mm10GRCm38
MGSCv37652,180,080 - 52,180,164 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera652,751,720 - 52,751,804 (-)NCBICelera
Cytogenetic Map6B3NCBI
cM Map625.4NCBI
MIR196B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11440,344,005 - 40,344,062 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1440,343,993 - 40,344,077 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1439,774,863 - 39,774,920 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01440,282,662 - 40,282,719 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1440,282,650 - 40,282,734 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11440,396,658 - 40,396,715 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01440,081,725 - 40,081,782 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01440,440,336 - 40,440,393 (-)NCBIUU_Cfam_GSD_1.0


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41081417091360527Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)432583980114627242Rat
8552782Vie1Viral induced encephalitis QTL 126.4brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat
8552801Bw143Body weight QTL 1437.3body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)43443048482490359Rat
8552809Vie5Viral induced encephalitis QTL 525.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat
8655961Kidm43Kidney mass QTL 4318kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)436303261103194984Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
1300139Hrtrt6Heart rate QTL 62.85heart pumping trait (VT:2000009)heart rate (CMO:0000002)439524264116179656Rat
61445Strs3Sensitivity to stroke QTL 33cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)44043338885433388Rat
8694439Bw168Body weight QTL 1689.570.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)44043341485433414Rat
6893678Bw108Body weight QTL 1082.60.006body mass (VT:0001259)body weight (CMO:0000012)44345797688457976Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)444463720155883716Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)444463908148090542Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)444463908148090542Rat
2312567Glom19Glomerulus QTL 191.90.006kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)445456990146803430Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)450119848146803430Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)456647873149491524Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)456698790126192555Rat
631546Bp86Blood pressure QTL 863.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)45711443291360801Rat
1358363Sradr3Stress Responsive Adrenal Weight QTL 36.19adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)457486946102486946Rat
1558651Swd3Spike wave discharge measurement QTL 34.620.000024brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)45843213392991462Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)459948935154902892Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
1578657Bss12Bone structure and strength QTL 128.9femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)460220938105220938Rat
1578658Bss13Bone structure and strength QTL 138femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)460220938105220938Rat
2300179Bmd50Bone mineral density QTL 505.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)460928534105928534Rat
1549843Bw53Body weight QTL 530.0001body mass (VT:0001259)body weight gain (CMO:0000420)461697658103194791Rat
1549839Bw52Body weight QTL 520.0001body mass (VT:0001259)body weight gain (CMO:0000420)461697658115089733Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)462277855128289560Rat
6478743Anxrr40Anxiety related response QTL 400.83076defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)462753847107753847Rat
6478772Anxrr49Anxiety related response QTL 490.15488defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)462753847107753847Rat
6478684Anxrr30Anxiety related response QTL 300.00087defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)462753847107753847Rat
631651Bp124Blood pressure QTL 1243arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)462879517107879517Rat
7394826Bw126Body weight QTL 1260.002body mass (VT:0001259)body weight gain (CMO:0000420)46293326987483707Rat
8552807Vie4Viral induced encephalitis QTL 47.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)46293350882490359Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)percent change in mean arterial blood pressure (CMO:0002035)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)percent change in systolic blood pressure (CMO:0000747)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)absolute change in pulse pressure (CMO:0001882)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)462933508114921294Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)464528739157573521Rat
2312569Pur19Proteinuria QTL 193.40.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)46588210796130297Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)470362013132642728Rat
634344Hcar7Hepatocarcinoma resistance QTL 77.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)470808386115808386Rat
634344Hcar7Hepatocarcinoma resistance QTL 77.8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)470808386115808386Rat
631646Stl4Serum triglyceride level QTL 46.50.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)473169846132642728Rat
724522Bp146Blood pressure QTL 1462.20.0021arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)473630210118630210Rat
2302051Pia28Pristane induced arthritis QTL 285.30.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)473630210118630210Rat
70167Bw22Body weight QTL 223.1body mass (VT:0001259)body weight (CMO:0000012)476647384117676292Rat
1357342Bw40Body weight QTL 400.001body mass (VT:0001259)body weight (CMO:0000012)476647384117676292Rat
631662Hcar2Hepatocarcinoma resistance QTL 23.10.0003liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)478878504123878504Rat
631556Bp135Blood pressure QTL 1350.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)478881294117676292Rat
2317586Eae25Experimental allergic encephalomyelitis QTL 259.300000190734863nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)47888281783007655Rat
2317586Eae25Experimental allergic encephalomyelitis QTL 259.300000190734863nervous system integrity trait (VT:0010566)percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)47888281783007655Rat
2317586Eae25Experimental allergic encephalomyelitis QTL 259.300000190734863nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)47888281783007655Rat
2317586Eae25Experimental allergic encephalomyelitis QTL 259.300000190734863nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis duration (CMO:0001424)47888281783007655Rat
61364Iddm2Insulin dependent diabetes mellitus QTL 2blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)478885890102684881Rat
738015Pia9Pristane induced arthritis QTL 94.50.048joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)480694870125694870Rat
2306899Bp338Blood pressure QTL 3380.071arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)481006124120102625Rat
1641919Alc22Alcohol consumption QTL 220.0005drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)481192555126192555Rat

Markers in Region
REN100642  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2481,331,337 - 81,331,570 (+)MAPPERmRatBN7.2
Rnor_6.0482,199,906 - 82,200,138NCBIRnor6.0
Rnor_6.0482,285,701 - 82,285,933NCBIRnor6.0
Rnor_5.04146,952,532 - 146,952,764UniSTSRnor5.0
Rnor_5.04146,866,737 - 146,866,969UniSTSRnor5.0
RGSC_v3.4480,531,229 - 80,531,461UniSTSRGSC3.4
Celera476,221,971 - 76,222,203UniSTS


Expression


Sequence


RefSeq Acc Id: ENSRNOT00000071717
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl482,199,056 - 82,199,140 (-)Ensembl
RefSeq Acc Id: NR_031946
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8482,661,101 - 82,661,185 (-)NCBI
mRatBN7.2481,330,487 - 81,330,571 (-)NCBI
Rnor_6.0482,199,056 - 82,199,140 (-)NCBI
Rnor_5.04146,865,887 - 146,865,971 (-)NCBI
RGSC_v3.4480,530,379 - 80,530,463 (-)RGD
Celera476,221,120 - 76,221,204 (-)RGD
Sequence:
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2314882 AgrOrtholog
BioCyc Gene G2FUF-44813 BioCyc
Ensembl Genes ENSRNOG00000049258 Ensembl
  ENSRNOG00000063469 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000111855 ENTREZGENE
miRBase MI0001152 ENTREZGENE
NCBI Gene 100314164 ENTREZGENE
PhenoGen Mir196b PhenoGen
RatGTEx ENSRNOG00000049258 RatGTEx
  ENSRNOG00000063469 RatGTEx
RNAcentral URS0000611746 RNACentral
  URS000075A937 RNACentral
  URS000075AEB7 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 Mir196b  microRNA 196b  Mir196b  microRNA mir-196b-2  Data merged from RGD:149736216 737654 PROVISIONAL
2021-08-09 Mir196b  microRNA mir-196b-2      Symbol and Name status set to provisional 45752 PROVISIONAL
2013-08-14 Mir196b  microRNA 196b  Mir196b  microRNA mir-196b  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2009-12-04 Mir196b  microRNA mir-196b      Symbol and Name status set to provisional 70820 PROVISIONAL