Krba1 (KRAB-A domain containing 1) - Rat Genome Database

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Gene: Krba1 (KRAB-A domain containing 1) Rattus norvegicus
Analyze
Symbol: Krba1
Name: KRAB-A domain containing 1
RGD ID: 1306967
Description: Orthologous to human KRBA1 (KRAB-A domain containing 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; amphetamine; bisphenol A.
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOC362358; RGD1306967; similar to KIAA1862 protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2477,341,654 - 77,363,075 (+)NCBI
Rnor_6.0 Ensembl478,024,765 - 78,046,066 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0478,024,867 - 78,046,330 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04142,688,463 - 142,709,881 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4476,477,912 - 76,499,326 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1476,754,057 - 76,774,989 (+)NCBI
Celera472,279,357 - 72,300,819 (+)NCBICelera
Cytogenetic Map4q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References


Genomics

Comparative Map Data
Krba1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2477,341,654 - 77,363,075 (+)NCBI
Rnor_6.0 Ensembl478,024,765 - 78,046,066 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0478,024,867 - 78,046,330 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04142,688,463 - 142,709,881 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4476,477,912 - 76,499,326 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1476,754,057 - 76,774,989 (+)NCBI
Celera472,279,357 - 72,300,819 (+)NCBICelera
Cytogenetic Map4q24NCBI
KRBA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl7149,714,781 - 149,734,575 (+)EnsemblGRCh38hg38GRCh38
GRCh387149,714,945 - 149,734,575 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh377149,412,042 - 149,431,664 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367149,043,081 - 149,062,597 (+)NCBINCBI36hg18NCBI36
Celera7144,081,358 - 144,100,876 (+)NCBI
Cytogenetic Map7q36.1NCBI
HuRef7143,488,412 - 143,507,802 (+)NCBIHuRef
CHM1_17149,420,687 - 149,440,251 (+)NCBICHM1_1
CRA_TCAGchr7v27148,750,155 - 148,769,673 (+)NCBI
Krba1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39648,371,577 - 48,396,789 (+)NCBIGRCm39mm39
GRCm39 Ensembl648,372,520 - 48,396,715 (+)Ensembl
GRCm38648,394,643 - 48,419,855 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl648,395,586 - 48,419,781 (+)EnsemblGRCm38mm10GRCm38
MGSCv37648,345,585 - 48,369,854 (+)NCBIGRCm37mm9NCBIm37
MGSCv36648,325,252 - 48,346,487 (+)NCBImm8
Celera648,899,449 - 48,923,738 (+)NCBICelera
Cytogenetic Map6B2.3NCBI
Krba1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554914,784,937 - 4,804,051 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554914,784,536 - 4,805,976 (+)NCBIChiLan1.0ChiLan1.0
KRBA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.17153,891,432 - 153,910,989 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7153,891,432 - 153,910,989 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v07141,417,879 - 141,439,606 (+)NCBIMhudiblu_PPA_v0panPan3
KRBA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11614,487,421 - 14,514,016 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1614,487,552 - 14,511,207 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1615,096,286 - 15,122,912 (+)NCBI
ROS_Cfam_1.01616,202,413 - 16,229,046 (+)NCBI
UMICH_Zoey_3.11614,582,526 - 14,609,160 (+)NCBI
UNSW_CanFamBas_1.01615,163,323 - 15,189,959 (+)NCBI
UU_Cfam_GSD_1.01615,213,485 - 15,240,117 (+)NCBI
Krba1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244051187,115,619 - 7,135,007 (-)NCBI
SpeTri2.0NW_0049365275,768,251 - 5,783,853 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KRBA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1855,738,167 - 55,762,968 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11855,738,139 - 55,762,987 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21861,138,184 - 61,150,922 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KRBA1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121118,280,304 - 118,299,922 (+)NCBI
ChlSab1.1 Ensembl21118,280,320 - 118,299,392 (+)Ensembl
Krba1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248006,266,554 - 6,291,335 (-)NCBI

Position Markers
D4Got59  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0478,039,977 - 78,040,137NCBIRnor6.0
Rnor_5.04142,703,528 - 142,703,688UniSTSRnor5.0
RGSC_v3.4476,492,967 - 76,493,128RGDRGSC3.4
RGSC_v3.4476,492,968 - 76,493,128UniSTSRGSC3.4
RGSC_v3.1476,769,097 - 76,769,258RGD
Celera472,294,466 - 72,294,626UniSTS
RH 2.0 Map4524.1RGD
Cytogenetic Map4q24UniSTS
RH128168  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0478,046,033 - 78,046,218NCBIRnor6.0
Rnor_5.04142,709,584 - 142,709,769UniSTSRnor5.0
RGSC_v3.4476,499,024 - 76,499,209UniSTSRGSC3.4
Celera472,300,522 - 72,300,707UniSTS
RH 3.4 Map4485.6UniSTS
Cytogenetic Map4q24UniSTS
AI448780  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0478,046,126 - 78,046,266NCBIRnor6.0
Rnor_5.04142,709,677 - 142,709,817UniSTSRnor5.0
RGSC_v3.4476,499,117 - 76,499,257UniSTSRGSC3.4
Celera472,300,615 - 72,300,755UniSTS
Cytogenetic Map4q24UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4304323179575658Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)43043231145254791Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)4734240492484039Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)47850904182171018Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)423850384169318094Rat
8655906Rf60Renal function QTL 603.8blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)42665474981874227Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)429549895112807890Rat
8552782Vie1Viral induced encephalitis QTL 126.4brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43182556083531021Rat
8552801Bw143Body weight QTL 1437.3body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)43182556083531021Rat
8552809Vie5Viral induced encephalitis QTL 525.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43182556083531021Rat
8655961Kidm43Kidney mass QTL 4318kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)43427793299067150Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)436615599145611886Rat
1300139Hrtrt6Heart rate QTL 62.85heart pumping trait (VT:2000009)heart rate (CMO:0000002)437703272115372927Rat
61445Strs3Sensitivity to stroke QTL 33cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)43920822284208222Rat
8694439Bw168Body weight QTL 1689.570.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)43920824784208247Rat
6893678Bw108Body weight QTL 1082.60.006body mass (VT:0001259)body weight (CMO:0000012)44241577787415777Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)443414605155469929Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)443414792146942075Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)443414792146942075Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)446898276145611886Rat
2312567Glom19Glomerulus QTL 191.90.006kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)449906054145611886Rat
4889969Bss96Bone structure and strength QTL 964.9tibia size trait (VT:0100001)tibia cortical bone volume (CMO:0001725)45532485779575658Rat
4889972Bss97Bone structure and strength QTL 975.6tibia size trait (VT:0100001)tibia total bone volume (CMO:0001724)45532485779575658Rat
5685009Bmd86Bone mineral density QTL 863.7tibia mineral mass (VT:1000283)bone mineral density (CMO:0001226)45532485779575658Rat
5685012Bmd87Bone mineral density QTL 875.1tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)45532485779575658Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)455324953148360954Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)455375865125671711Rat
634311Sach7Saccharin preference QTL 7taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)45579156482134846Rat
631546Bp86Blood pressure QTL 863.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)45579156492484312Rat
61336Bp21Blood pressure QTL 214.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)45579183479557856Rat
1578657Bss12Bone structure and strength QTL 128.9femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)456092756101092756Rat
1578658Bss13Bone structure and strength QTL 138femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)456092756101092756Rat
1558651Swd3Spike wave discharge measurement QTL 34.620.000024brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)45710107792990863Rat
631671Iddm11Insulin dependent diabetes mellitus QTL 113.60.0012blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)45730707579578854Rat
1358363Sradr3Stress Responsive Adrenal Weight QTL 36.19adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)458166424103166424Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)458640017154427984Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)458640017154427984Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)458640017154427984Rat
1549843Bw53Body weight QTL 530.0001body mass (VT:0001259)body weight gain (CMO:0000420)46043912799066957Rat
1549839Bw52Body weight QTL 520.0001body mass (VT:0001259)body weight gain (CMO:0000420)460439127113416139Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)461038901127777403Rat
7394826Bw126Body weight QTL 1260.002body mass (VT:0001259)body weight gain (CMO:0000420)46170810388565113Rat
8552807Vie4Viral induced encephalitis QTL 47.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)46170834183531021Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)461708341113100992Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)461708341113100992Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)461708341113100992Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)percent change in mean arterial blood pressure (CMO:0002035)461708341113100992Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)percent change in systolic blood pressure (CMO:0000747)461708341113100992Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)absolute change in pulse pressure (CMO:0001882)461708341113100992Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)461708341113100992Rat
2300179Bmd50Bone mineral density QTL 505.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)461975371106975371Rat
1641919Alc22Alcohol consumption QTL 220.0005drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)462947687125671711Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)463537179157286626Rat
6478684Anxrr30Anxiety related response QTL 300.00087defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)463812687108812687Rat
6478743Anxrr40Anxiety related response QTL 400.83076defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)463812687108812687Rat
6478772Anxrr49Anxiety related response QTL 490.15488defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)463812687108812687Rat
631651Bp124Blood pressure QTL 1243arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)463938412108938412Rat
2312569Pur19Proteinuria QTL 193.40.001total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)46598924397759057Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)470773471132455556Rat
634344Hcar7Hepatocarcinoma resistance QTL 77.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)471476518116476518Rat
634344Hcar7Hepatocarcinoma resistance QTL 77.8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)471476518116476518Rat
631646Stl4Serum triglyceride level QTL 46.50.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)473786419132455556Rat
724522Bp146Blood pressure QTL 1462.20.0021arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)475258970120258970Rat
2302051Pia28Pristane induced arthritis QTL 285.30.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)475258970120258970Rat
738015Pia9Pristane induced arthritis QTL 94.50.048joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)476567036121567036Rat
70167Bw22Body weight QTL 223.1body mass (VT:0001259)body weight (CMO:0000012)477307388116916073Rat
1357342Bw40Body weight QTL 400.001body mass (VT:0001259)body weight (CMO:0000012)477307388116916073Rat
2306545Iddm39Insulin dependent diabetes mellitus QTL 39blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)47803997778371222Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:272
Count of miRNA genes:108
Interacting mature miRNAs:121
Transcripts:ENSRNOT00000010111, ENSRNOT00000043856
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 26 12 4 10 4 68 29 41 10
Low 3 17 45 37 9 37 8 11 6 6 1 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_001053983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_342681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC123494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000043856   ⟹   ENSRNOP00000040855
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl478,024,765 - 78,046,066 (+)Ensembl
RefSeq Acc Id: XM_001053983   ⟹   XP_001053983
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera472,279,359 - 72,300,819 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006224908   ⟹   XP_006224970
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera472,279,358 - 72,300,819 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006224909   ⟹   XP_006224971
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera472,279,358 - 72,300,819 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006236447   ⟹   XP_006236509
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2477,341,670 - 77,363,075 (+)NCBI
Rnor_6.0478,024,868 - 78,046,330 (+)NCBI
Rnor_5.04142,688,463 - 142,709,881 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006236448   ⟹   XP_006236510
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2477,341,752 - 77,363,075 (+)NCBI
Rnor_6.0478,024,868 - 78,046,330 (+)NCBI
Rnor_5.04142,688,463 - 142,709,881 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008762931   ⟹   XP_008761153
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0478,024,867 - 78,046,330 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008775728   ⟹   XP_008773950
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera472,279,357 - 72,300,819 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592991   ⟹   XP_017448480
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0478,024,868 - 78,046,330 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017602792   ⟹   XP_017458281
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera472,279,358 - 72,300,819 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039108654   ⟹   XP_038964582
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2477,341,654 - 77,363,075 (+)NCBI
RefSeq Acc Id: XM_039108655   ⟹   XP_038964583
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2477,341,654 - 77,363,075 (+)NCBI
RefSeq Acc Id: XM_039108656   ⟹   XP_038964584
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2477,341,654 - 77,363,075 (+)NCBI
RefSeq Acc Id: XM_039108657   ⟹   XP_038964585
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2477,341,654 - 77,363,075 (+)NCBI
RefSeq Acc Id: XM_039108658   ⟹   XP_038964586
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2477,341,654 - 77,363,075 (+)NCBI
RefSeq Acc Id: XM_039108659   ⟹   XP_038964587
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2477,341,767 - 77,363,075 (+)NCBI
RefSeq Acc Id: XM_039108660   ⟹   XP_038964588
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2477,341,768 - 77,363,075 (+)NCBI
RefSeq Acc Id: XM_039108661   ⟹   XP_038964589
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2477,341,892 - 77,363,075 (+)NCBI
RefSeq Acc Id: XM_039108662   ⟹   XP_038964590
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2477,341,654 - 77,362,372 (+)NCBI
RefSeq Acc Id: XM_342681   ⟹   XP_342682
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0478,024,869 - 78,046,330 (+)NCBI
Rnor_5.04142,688,463 - 142,709,881 (+)NCBI
RGSC_v3.4476,477,912 - 76,499,326 (+)RGD
Sequence:
Reference Sequences
RefSeq Acc Id: XP_001053983   ⟸   XM_001053983
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_342682   ⟸   XM_342681
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006224970   ⟸   XM_006224908
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006224971   ⟸   XM_006224909
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006236509   ⟸   XM_006236447
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_006236510   ⟸   XM_006236448
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_008773950   ⟸   XM_008775728
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_008761153   ⟸   XM_008762931
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017458281   ⟸   XM_017602792
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017448480   ⟸   XM_017592991
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: ENSRNOP00000040855   ⟸   ENSRNOT00000043856
RefSeq Acc Id: XP_038964582   ⟸   XM_039108654
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038964584   ⟸   XM_039108656
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038964583   ⟸   XM_039108655
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038964585   ⟸   XM_039108657
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038964586   ⟸   XM_039108658
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038964590   ⟸   XM_039108662
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038964587   ⟸   XM_039108659
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038964588   ⟸   XM_039108660
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038964589   ⟸   XM_039108661
- Peptide Label: isoform X7

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Damaging Variants


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
4 142697746 142697747 G A snv WAG/Rij (KNAW)
4 142700170 142700171 G A snv WAG/Rij (KNAW)
4 142705976 142705977 T A snv LL/MavRrrc (KNAW), LH/MavRrrc (KNAW), LN/MavRrrc (KNAW)
4 142707562 142707563 A G snv ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), GH/OmrMcwi (MCW), SBH/Ygl (MCW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), SBN/Ygl (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), LH/MavRrrc (KNAW), LL/MavRrrc (KNAW), LN/MavRrrc (KNAW), MHS/Gib (KNAW), MR/N (KNAW), SR/JrHsd (KNAW), SS/Jr (KNAW), SS/JrHsdMcwi (KNAW), WAG/Rij (KNAW), ACI/N (KNAW), ACI/EurMcwi (KNAW), BBDP/WorN (KNAW), SBH/Ygl (KNAW), SBN/Ygl (KNAW), SHR/NCrlPrin (KNAW), SHR/NHsd (KNAW), SHR/OlaIpcv (KNAW), SHR/OlaIpcvPrin (KNAW), SHRSP/Gcrc (KNAW), F344/NRrrc (Illumina) (KNAW), WKY/Gcrc (KNAW), WKY/N (KNAW), WKY/NCrl (KNAW), WKY/NHsd (KNAW), BUF/N (KNAW), DA/BklArbNsi (KNAW), F344/NRrrc (SOLiD) (KNAW), F344/NCrl (KNAW), F344/NHsd (KNAW), FHH/EurMcwi (KNAW), FHL/EurMcwi (KNAW), GK/Ox (KNAW), LE/Stm (Illumina) (KNAW), LE/Stm (SOLiD) (KNAW), LEW/Crl (KNAW), LEW/NCrl (KNAW), M520/N (KNAW), WN/N (KNAW), SDLEF7/Barth (UDEL), LE/OrlBarth (UDEL), Crl:SD (UDEL), IS/Kyo (KyushuU), BUF/MNa (KyushuU), NIG-III/Hok (KyushuU), HTX/Kyo (KyushuU), F344/NSlc (KyushuU), IS-Tlk/Kyo (KyushuU), HWY/Slc (KyushuU), LEC/Tj (KyushuU), ZF (KyushuU), ZFDM (KyushuU)
4 142708959 142708960 C A snv F344/Jcl (KyushuU)


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
4 78034195 78034196 G A snv WAG/Rij (RGD)
4 78036619 78036620 G A snv WAG/Rij (RGD)
4 78042425 78042426 T A snv LH/MavRrrc (RGD), LN/MavRrrc (RGD), LL/MavRrrc (RGD)
4 78044011 78044012 A G snv FHL/EurMcwi (MCW), SBN/Ygl (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), CDR, CDS, ACI/N (MCW), F344/NRrrc (MCW), M520/N (MCW), MR/N (MCW), WN/N (MCW), FHL/EurMcwi (RGD), ACI/EurMcwi (RGD), BBDP/Wor (RGD), F344/NCrl (RGD), FHH/EurMcwi (RGD), GK/Ox (RGD), LE/Stm (RGD), LEW/Crl (RGD), LEW/NCrlBR (RGD), LH/MavRrrc (RGD), LN/MavRrrc (RGD), LL/MavRrrc (RGD), MHS/Gib (RGD), SBH/Ygl (RGD), SBN/Ygl (RGD), SHR/NHsd (RGD), SHRSP/Gcrc (RGD), SR/JrHsd (RGD), SS/Jr (RGD), SS/JrHsdMcwi (RGD), WAG/Rij (RGD), WKY/NCrl (RGD), WKY/Gcrc (RGD), FHH/EurMcwi (MCW), SBH/Ygl (MCW), GH/OmrMcwi (MCW), WKY/NHsd (RGD), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW)


Assembly: RGSC_v3.4

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
4 76487186 76487187 G A snv WAG/Rij (ICL)
4 76489610 76489611 G A snv WAG/Rij (ICL)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306967 AgrOrtholog
Ensembl Genes ENSRNOG00000007405 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000040855 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000043856 UniProtKB/TrEMBL
InterPro KRBA1 UniProtKB/TrEMBL
  KRBA1 UniProtKB/TrEMBL
NCBI Gene 362358 ENTREZGENE
PANTHER PTHR22740 UniProtKB/TrEMBL
Pfam KRBA1 UniProtKB/TrEMBL
PhenoGen Krba1 PhenoGen
SMART KRBA1 UniProtKB/TrEMBL
UniProt D4A2C1_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-07 Krba1  KRAB-A domain containing 1  RGD1306967_predicted  similar to KIAA1862 protein (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 RGD1306967_predicted  similar to KIAA1862 protein (predicted)  LOC362358_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC362358_predicted  similar to KIAA1862 protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL