Hnrnpa2b1 (heterogeneous nuclear ribonucleoprotein A2/B1) - Rat Genome Database

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Gene: Hnrnpa2b1 (heterogeneous nuclear ribonucleoprotein A2/B1) Rattus norvegicus
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Symbol: Hnrnpa2b1
Name: heterogeneous nuclear ribonucleoprotein A2/B1
RGD ID: 1310403
Description: Enables DNA polymerase binding activity and nucleic acid binding activity. Involved in several processes, including chromosome organization; mRNA export from nucleus; and positive regulation of telomere maintenance via telomere lengthening. Located in several cellular components, including neuronal ribonucleoprotein granule; nuclear lumen; and perikaryon. Part of chromatin. Is active in glutamatergic synapse; postsynaptic cytosol; and postsynaptic density. Used to study rheumatoid arthritis. Biomarker of hepatocellular carcinoma; pancreatic carcinoma; and transient cerebral ischemia. Human ortholog(s) of this gene implicated in inclusion body myopathy with Paget disease of bone and frontotemporal dementia and inclusion body myopathy with early-onset Paget disease of bone with or without frontotemporal dementia 2. Orthologous to human HNRNPA2B1 (heterogeneous nuclear ribonucleoprotein A2/B1); PARTICIPATES IN spliceosome pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dibromophenyl 2,4,5-tribromophenyl ether.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: heterogeneous nuclear ribonucleoprotein A2; heterogeneous nuclear ribonucleoprotein B0a; heterogeneous nuclear ribonucleoprotein B0b; heterogeneous nuclear ribonucleoprotein B1; Heterogeneous nuclear ribonucleoproteins A2/B1; hnRNP; hnRNP A2 / hnRNP B1; hnRNP A2/B1; Hnrpa2; Hnrpa2b1; nuclear ribonucleoprotein particle A2 protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8481,867,354 - 81,875,886 (-)NCBIGRCr8
mRatBN7.2480,534,659 - 80,545,297 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl480,534,651 - 80,545,249 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx485,762,653 - 85,769,532 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0481,538,047 - 81,544,926 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0479,977,473 - 79,984,352 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0481,237,496 - 81,241,281 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl481,237,496 - 81,241,282 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04145,903,680 - 145,907,465 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4479,700,327 - 79,704,116 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1479,975,786 - 79,982,624 (-)NCBI
Celera475,439,774 - 75,443,559 (-)NCBICelera
Cytogenetic Map4q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3-dimethoxynaphthalene-1,4-dione  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (EXP)
2,6-di-tert-butyl-4-methylphenol  (ISO)
2-amino-14,16-dimethyloctadecan-3-ol  (ISO)
2-bromohexadecanoic acid  (ISO)
3',5'-cyclic UMP  (ISO)
3-methylcholanthrene  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (EXP)
4-phenylbutyric acid  (ISO)
5-aza-2'-deoxycytidine  (ISO)
5-fluorouracil  (ISO)
7,12-dimethyltetraphene  (ISO)
9-cis-retinoic acid  (ISO)
acrylamide  (EXP)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
aldosterone  (EXP)
all-trans-retinoic acid  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (EXP,ISO)
bleomycin A2  (EXP)
buspirone  (EXP)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
canrenoic acid  (EXP)
carbon nanotube  (ISO)
chloropicrin  (ISO)
choline  (ISO)
cisplatin  (EXP,ISO)
clofibrate  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
coumarin  (ISO)
cyclosporin A  (ISO)
cylindrospermopsin  (ISO)
diallyl trisulfide  (ISO)
diarsenic trioxide  (ISO)
diazinon  (EXP)
dibenzo[a,l]pyrene  (ISO)
Dibutyl phosphate  (ISO)
dicrotophos  (ISO)
dihydroartemisinin  (ISO)
disulfiram  (ISO)
diuron  (EXP,ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
ethanol  (ISO)
eurycomanone  (ISO)
fenvalerate  (EXP)
flutamide  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
fructose  (EXP)
fulvestrant  (ISO)
furan  (EXP)
genistein  (ISO)
gentamycin  (EXP)
glafenine  (EXP)
graphite  (ISO)
hyaluronic acid  (EXP)
hydrogen peroxide  (EXP)
inulin  (ISO)
ivermectin  (ISO)
ketamine  (EXP)
L-methionine  (ISO)
lasalocid  (ISO)
lead diacetate  (ISO)
lead(0)  (ISO)
lipopolysaccharide  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
miconazole  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-methylformamide  (ISO)
nefazodone  (EXP)
ouabain  (ISO)
p-chloromercuribenzoic acid  (ISO)
paclitaxel  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
PCB138  (EXP)
pentanal  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenytoin  (EXP)
quercetin  (EXP,ISO)
raloxifene  (ISO)
resveratrol  (EXP,ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
succimer  (ISO)
sunitinib  (ISO)
T-2 toxin  (EXP)
tetracaine  (ISO)
tetraphene  (ISO)
thapsigargin  (EXP,ISO)
thiram  (ISO)
Tributyltin oxide  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (EXP)
triphenylstannane  (ISO)
tunicamycin  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vanadyl sulfate  (ISO)
vinclozolin  (EXP)
vincristine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Cholinergic-associated loss of hnRNP-A/B in Alzheimer's disease impairs cortical splicing and cognitive function in mice. Berson A, etal., EMBO Mol Med. 2012 Aug;4(8):730-42. doi: 10.1002/emmm.201100995. Epub 2012 May 25.
2. Proteomic analysis of in vivo-assembled pre-mRNA splicing complexes expands the catalog of participating factors. Chen YI, etal., Nucleic Acids Res. 2007;35(12):3928-44. Epub 2007 May 30.
3. Mitogenic insulin receptor-A is overexpressed in human hepatocellular carcinoma due to EGFR-mediated dysregulation of RNA splicing factors. Chettouh H, etal., Cancer Res. 2013 Jul 1;73(13):3974-86. doi: 10.1158/0008-5472.CAN-12-3824. Epub 2013 Apr 30.
4. Up-regulation and subcellular localization of hnRNP A2/B1 in the development of hepatocellular carcinoma. Cui H, etal., BMC Cancer. 2010 Jul 6;10:356. doi: 10.1186/1471-2407-10-356.
5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
6. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
7. Heterogeneous nuclear ribonucleoprotein A2/B1 is a tissue-specific aldosterone target gene with prominent induction in the rat distal colon. Hernandez-Diaz I, etal., Am J Physiol Gastrointest Liver Physiol. 2013 Jan 15;304(2):G122-31. doi: 10.1152/ajpgi.00130.2012. Epub 2012 Nov 8.
8. hnRNP A2 selectively binds the cytoplasmic transport sequence of myelin basic protein mRNA. Hoek KS, etal., Biochemistry. 1998 May 12;37(19):7021-9.
9. The rheumatoid arthritis-associated autoantigen hnRNP-A2 (RA33) is a major stimulator of autoimmunity in rats with pristane-induced arthritis. Hoffmann MH, etal., J Immunol. 2007 Dec 1;179(11):7568-76.
10. Mutations in prion-like domains in hnRNPA2B1 and hnRNPA1 cause multisystem proteinopathy and ALS. Kim HJ, etal., Nature. 2013 Mar 28;495(7442):467-73. doi: 10.1038/nature11922. Epub 2013 Mar 3.
11. Neuronal activity induces synaptic delivery of hnRNP A2/B1 by a BDNF-dependent mechanism in cultured hippocampal neurons. Leal G, etal., PLoS One. 2014 Oct 6;9(10):e108175. doi: 10.1371/journal.pone.0108175. eCollection 2014.
12. Histochemical mapping of hnRNP A2/B1 in rat brain after ischemia-reperfusion insults. Liu Y, etal., J Histochem Cytochem. 2010 Aug;58(8):695-705. doi: 10.1369/jhc.2010.955021. Epub 2010 Apr 26.
13. Increased expression of the MBP mRNA binding protein HnRNP A2 during oligodendrocyte differentiation. Maggipinto M, etal., J Neurosci Res. 2004 Mar 1;75(5):614-23.
14. Testis- and developmental stage-specific expression of hnRNP A2/B1 splicing isoforms, B0a/b. Matsui M, etal., Biochim Biophys Acta. 2000 Sep 7;1493(1-2):33-40.
15. Landscape of the hnRNP K protein-protein interactome. Mikula M, etal., Proteomics. 2006 Apr;6(8):2395-406.
16. Expression of heterogeneous nuclear ribonucleoprotein A2/B1 changes with critical stages of mammalian lung development. Montuenga LM, etal., Am J Respir Cell Mol Biol. 1998 Oct;19(4):554-62.
17. hnRNP A2, a potential ssDNA/RNA molecular adapter at the telomere. Moran-Jones K, etal., Nucleic Acids Res. 2005 Jan 19;33(2):486-96. Print 2005.
18. Mutational analysis of a heterogeneous nuclear ribonucleoprotein A2 response element for RNA trafficking. Munro TP, etal., J Biol Chem. 1999 Nov 26;274(48):34389-95.
19. GOA pipeline RGD automated data pipeline
20. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
21. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
22. A molecular mechanism for mRNA trafficking in neuronal dendrites. Shan J, etal., J Neurosci. 2003 Oct 1;23(26):8859-66.
23. RNA trafficking and stabilization elements associate with multiple brain proteins. Snee M, etal., J Cell Sci. 2002 Dec 1;115(Pt 23):4661-9.
24. An exonic splicing silencer is involved in the regulated splicing of glucose 6-phosphate dehydrogenase mRNA. Szeszel-Fedorowicz W, etal., J Biol Chem. 2006 Nov 10;281(45):34146-58. Epub 2006 Sep 15.
25. Sensitive and specific monoclonal antibody recognition of human lung cancer antigen on preserved sputum cells: a new approach to early lung cancer detection. Tockman MS, etal., J Clin Oncol. 1988 Nov;6(11):1685-93.
26. Telomere- and telomerase-interacting protein that unfolds telomere G-quadruplex and promotes telomere extension in mammalian cells. Wang F, etal., Proc Natl Acad Sci U S A. 2012 Dec 11;109(50):20413-8. doi: 10.1073/pnas.1200232109. Epub 2012 Nov 26.
27. Proteomic analysis of pancreatic intraepithelial neoplasia and pancreatic carcinoma in rat models. Wang L, etal., World J Gastroenterol. 2011 Mar 21;17(11):1434-41. doi: 10.3748/wjg.v17.i11.1434.
28. Proteomics analysis identifies molecular targets related to diabetes mellitus-associated bladder dysfunction. Yohannes E, etal., Mol Cell Proteomics. 2008 Jul;7(7):1270-85. doi: 10.1074/mcp.M700563-MCP200. Epub 2008 Mar 12.
29. RNA binding proteins accumulate at the postsynaptic density with synaptic activity. Zhang G, etal., J Neurosci. 2012 Jan 11;32(2):599-609. doi: 10.1523/JNEUROSCI.2463-11.2012.
Additional References at PubMed
PMID:2557628   PMID:9731529   PMID:9925756   PMID:11991638   PMID:12477932   PMID:16775011   PMID:17004321   PMID:17289661   PMID:17962088   PMID:18305102   PMID:18480465   PMID:18519039  
PMID:19946888   PMID:20716340   PMID:20719961   PMID:21807882   PMID:22082260   PMID:22658674   PMID:22681889   PMID:22720776   PMID:22871113   PMID:23907535   PMID:24356509   PMID:24625528  
PMID:24841565   PMID:25124043   PMID:26316108   PMID:26321680   PMID:26663205   PMID:29476059   PMID:32357304   PMID:35352799  


Genomics

Comparative Map Data
Hnrnpa2b1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8481,867,354 - 81,875,886 (-)NCBIGRCr8
mRatBN7.2480,534,659 - 80,545,297 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl480,534,651 - 80,545,249 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx485,762,653 - 85,769,532 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0481,538,047 - 81,544,926 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0479,977,473 - 79,984,352 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0481,237,496 - 81,241,281 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl481,237,496 - 81,241,282 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04145,903,680 - 145,907,465 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4479,700,327 - 79,704,116 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1479,975,786 - 79,982,624 (-)NCBI
Celera475,439,774 - 75,443,559 (-)NCBICelera
Cytogenetic Map4q24NCBI
HNRNPA2B1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38726,189,927 - 26,200,746 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl726,171,151 - 26,201,529 (-)EnsemblGRCh38hg38GRCh38
GRCh37726,229,547 - 26,240,366 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36726,196,081 - 26,206,938 (-)NCBINCBI36Build 36hg18NCBI36
Build 34726,004,706 - 26,013,606NCBI
Celera726,218,541 - 26,229,398 (-)NCBICelera
Cytogenetic Map7p15.2NCBI
HuRef726,111,470 - 26,122,327 (-)NCBIHuRef
CHM1_1726,222,782 - 26,233,627 (-)NCBICHM1_1
T2T-CHM13v2.0726,325,605 - 26,336,424 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2726,280,706 - 26,291,563 (-)NCBI
Hnrnpa2b1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39651,437,414 - 51,448,054 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl651,437,912 - 51,446,874 (-)EnsemblGRCm39 Ensembl
GRCm38651,460,434 - 51,470,048 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl651,460,932 - 51,469,894 (-)EnsemblGRCm38mm10GRCm38
MGSCv37651,410,433 - 51,419,893 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36651,390,707 - 51,399,428 (-)NCBIMGSCv36mm8
Celera651,978,168 - 51,987,628 (-)NCBICelera
Cytogenetic Map6B3NCBI
cM Map624.87NCBI
Hnrnpa2b1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541028,032,193 - 28,042,459 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541028,032,193 - 28,042,459 (-)NCBIChiLan1.0ChiLan1.0
HNRNPA2B1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2631,019,950 - 31,030,927 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1779,344,676 - 79,355,653 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0726,835,881 - 26,846,578 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1726,439,245 - 26,450,732 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl726,439,443 - 26,449,985 (-)Ensemblpanpan1.1panPan2
HNRNPA2B1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11439,498,805 - 39,509,034 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1439,500,897 - 39,508,952 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1438,989,700 - 38,999,867 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01439,437,563 - 39,447,742 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1439,437,569 - 39,447,697 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11439,552,641 - 39,562,803 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01439,239,793 - 39,249,947 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01439,590,455 - 39,600,609 (-)NCBIUU_Cfam_GSD_1.0
Hnrnpa2b1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511883,757,798 - 83,768,551 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364782,970,468 - 2,980,381 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364782,970,261 - 2,980,277 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HNRNPA2B1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1846,205,418 - 46,215,856 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11846,205,164 - 46,215,861 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21850,980,507 - 50,990,993 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HNRNPA2B1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12132,167,126 - 32,178,031 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2132,167,337 - 32,176,980 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604272,511,884 - 72,523,058 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hnrnpa2b1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247394,343,246 - 4,352,066 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247394,343,164 - 4,353,123 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Hnrnpa2b1
39 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:788
Count of miRNA genes:215
Interacting mature miRNAs:270
Transcripts:ENSRNOT00000015152, ENSRNOT00000015325, ENSRNOT00000072743
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41081417091360527Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
8655906Rf60Renal function QTL 603.8blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)42949419581006281Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)432583980114627242Rat
8552782Vie1Viral induced encephalitis QTL 126.4brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat
8552801Bw143Body weight QTL 1437.3body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)43443048482490359Rat
8552809Vie5Viral induced encephalitis QTL 525.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat
8655961Kidm43Kidney mass QTL 4318kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)436303261103194984Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
1300139Hrtrt6Heart rate QTL 62.85heart pumping trait (VT:2000009)heart rate (CMO:0000002)439524264116179656Rat
61445Strs3Sensitivity to stroke QTL 33cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)44043338885433388Rat
8694439Bw168Body weight QTL 1689.570.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)44043341485433414Rat
6893678Bw108Body weight QTL 1082.60.006body mass (VT:0001259)body weight (CMO:0000012)44345797688457976Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)444463720155883716Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)444463908148090542Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)444463908148090542Rat
2312567Glom19Glomerulus QTL 191.90.006kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)445456990146803430Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)450119848146803430Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)456647873149491524Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)456698790126192555Rat
634311Sach7Saccharin preference QTL 7taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)45711443281266970Rat
631546Bp86Blood pressure QTL 863.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)45711443291360801Rat
1358363Sradr3Stress Responsive Adrenal Weight QTL 36.19adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)457486946102486946Rat
1558651Swd3Spike wave discharge measurement QTL 34.620.000024brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)45843213392991462Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)459948935154902892Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
1578657Bss12Bone structure and strength QTL 128.9femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)460220938105220938Rat
1578658Bss13Bone structure and strength QTL 138femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)460220938105220938Rat
2300179Bmd50Bone mineral density QTL 505.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)460928534105928534Rat
1549843Bw53Body weight QTL 530.0001body mass (VT:0001259)body weight gain (CMO:0000420)461697658103194791Rat
1549839Bw52Body weight QTL 520.0001body mass (VT:0001259)body weight gain (CMO:0000420)461697658115089733Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)462277855128289560Rat
6478743Anxrr40Anxiety related response QTL 400.83076defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)462753847107753847Rat
6478772Anxrr49Anxiety related response QTL 490.15488defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)462753847107753847Rat
6478684Anxrr30Anxiety related response QTL 300.00087defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)462753847107753847Rat
631651Bp124Blood pressure QTL 1243arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)462879517107879517Rat
7394826Bw126Body weight QTL 1260.002body mass (VT:0001259)body weight gain (CMO:0000420)46293326987483707Rat
8552807Vie4Viral induced encephalitis QTL 47.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)46293350882490359Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)percent change in mean arterial blood pressure (CMO:0002035)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)percent change in systolic blood pressure (CMO:0000747)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)absolute change in pulse pressure (CMO:0001882)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)462933508114921294Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)464528739157573521Rat
2312569Pur19Proteinuria QTL 193.40.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)46588210796130297Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)470362013132642728Rat
634344Hcar7Hepatocarcinoma resistance QTL 77.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)470808386115808386Rat
634344Hcar7Hepatocarcinoma resistance QTL 77.8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)470808386115808386Rat
631646Stl4Serum triglyceride level QTL 46.50.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)473169846132642728Rat
724522Bp146Blood pressure QTL 1462.20.0021arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)473630210118630210Rat
2302051Pia28Pristane induced arthritis QTL 285.30.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)473630210118630210Rat
70167Bw22Body weight QTL 223.1body mass (VT:0001259)body weight (CMO:0000012)476647384117676292Rat
1357342Bw40Body weight QTL 400.001body mass (VT:0001259)body weight (CMO:0000012)476647384117676292Rat
631662Hcar2Hepatocarcinoma resistance QTL 23.10.0003liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)478878504123878504Rat
631556Bp135Blood pressure QTL 1350.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)478881294117676292Rat
2317586Eae25Experimental allergic encephalomyelitis QTL 259.300000190734863nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)47888281783007655Rat
2317586Eae25Experimental allergic encephalomyelitis QTL 259.300000190734863nervous system integrity trait (VT:0010566)percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)47888281783007655Rat
2317586Eae25Experimental allergic encephalomyelitis QTL 259.300000190734863nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)47888281783007655Rat
2317586Eae25Experimental allergic encephalomyelitis QTL 259.300000190734863nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis duration (CMO:0001424)47888281783007655Rat
61364Iddm2Insulin dependent diabetes mellitus QTL 2blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)478885890102684881Rat

Markers in Region
RH139245  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23118,679,429 - 118,679,551 (+)MAPPERmRatBN7.2
mRatBN7.2480,545,055 - 80,545,177 (+)MAPPERmRatBN7.2
Rnor_6.0481,243,498 - 81,243,619NCBIRnor6.0
Rnor_6.03124,014,086 - 124,014,207NCBIRnor6.0
Rnor_5.04145,909,682 - 145,909,803UniSTSRnor5.0
Rnor_5.03130,510,840 - 130,510,961UniSTSRnor5.0
RGSC_v3.43119,167,545 - 119,167,666UniSTSRGSC3.4
RGSC_v3.4479,706,329 - 79,706,450UniSTSRGSC3.4
Celera475,445,776 - 75,445,897UniSTS
Celera3117,485,561 - 117,485,682UniSTS
RH 3.4 Map4526.02UniSTS
Cytogenetic Map4q24UniSTS
Cytogenetic Map3q36UniSTS
AW528373  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2480,546,621 - 80,546,806 (+)MAPPERmRatBN7.2
Rnor_6.0481,245,069 - 81,245,253NCBIRnor6.0
Rnor_5.04145,911,253 - 145,911,437UniSTSRnor5.0
RGSC_v3.4479,707,896 - 79,708,080UniSTSRGSC3.4
Celera475,447,332 - 75,447,516UniSTS
RH 3.4 Map4489.81UniSTS
Cytogenetic Map4q24UniSTS
AA963720  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23118,680,627 - 118,680,814 (+)MAPPERmRatBN7.2
mRatBN7.2480,536,833 - 80,537,020 (-)MAPPERmRatBN7.2
mRatBN7.2480,536,833 - 80,537,020 (+)MAPPERmRatBN7.2
Rnor_6.0481,235,277 - 81,235,463NCBIRnor6.0
Rnor_6.03124,005,021 - 124,005,207NCBIRnor6.0
Rnor_5.04145,901,461 - 145,901,647UniSTSRnor5.0
Rnor_5.03130,501,750 - 130,501,936UniSTSRnor5.0
RGSC_v3.43119,169,064 - 119,169,250UniSTSRGSC3.4
RGSC_v3.4479,698,108 - 79,698,294UniSTSRGSC3.4
Celera475,437,555 - 75,437,741UniSTS
Celera3117,486,759 - 117,486,945UniSTS
RH 3.4 Map4401.94UniSTS
Cytogenetic Map4q24UniSTS
Cytogenetic Map3q36UniSTS
MARC_1211-1212:991931105:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2480,538,717 - 80,539,093 (+)MAPPERmRatBN7.2
Rnor_6.0481,237,161 - 81,237,536NCBIRnor6.0
Rnor_5.04145,903,345 - 145,903,720UniSTSRnor5.0
RGSC_v3.4479,699,992 - 79,700,367UniSTSRGSC3.4
Celera475,439,439 - 75,439,814UniSTS
Cytogenetic Map4q24UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High 1 14 14 14 2 14 49 20 28
Medium 2 29 43 27 17 27 8 11 25 15 13 11 8
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001104613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005503250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005503252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010065664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010065665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010065666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010065667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010065668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010065669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010065670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010065671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010065672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010065673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010065674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB006815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB006816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB006817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB006818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC166548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000015152   ⟹   ENSRNOP00000015152
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl480,538,383 - 80,545,249 (-)Ensembl
Rnor_6.0 Ensembl481,237,496 - 81,241,282 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000015325   ⟹   ENSRNOP00000015325
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl480,536,725 - 80,545,224 (-)Ensembl
Rnor_6.0 Ensembl481,237,496 - 81,241,152 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000110985   ⟹   ENSRNOP00000078023
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl480,538,383 - 80,542,840 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000116353   ⟹   ENSRNOP00000077328
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl480,534,651 - 80,545,221 (-)Ensembl
RefSeq Acc Id: NM_001104613   ⟹   NP_001098083
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8481,869,012 - 81,875,886 (-)NCBI
mRatBN7.2480,538,383 - 80,545,258 (-)NCBI
Rnor_6.0481,237,496 - 81,241,281 (-)NCBI
Rnor_5.04145,903,680 - 145,907,465 (-)NCBI
RGSC_v3.4479,700,327 - 79,704,116 (-)RGD
Celera475,439,774 - 75,443,559 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039107789   ⟹   XP_038963717
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8481,868,121 - 81,875,809 (-)NCBI
mRatBN7.2480,537,487 - 80,545,297 (-)NCBI
RefSeq Acc Id: XM_039107790   ⟹   XP_038963718
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8481,867,354 - 81,875,809 (-)NCBI
mRatBN7.2480,534,659 - 80,545,297 (-)NCBI
RefSeq Acc Id: XM_039107791   ⟹   XP_038963719
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8481,867,354 - 81,875,809 (-)NCBI
mRatBN7.2480,537,883 - 80,545,297 (-)NCBI
RefSeq Acc Id: XM_039107792   ⟹   XP_038963720
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8481,869,012 - 81,875,809 (-)NCBI
mRatBN7.2480,538,383 - 80,545,297 (-)NCBI
RefSeq Acc Id: XM_039107793   ⟹   XP_038963721
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8481,867,354 - 81,875,809 (-)NCBI
mRatBN7.2480,534,659 - 80,545,297 (-)NCBI
RefSeq Acc Id: XM_039107794   ⟹   XP_038963722
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8481,869,012 - 81,875,809 (-)NCBI
mRatBN7.2480,538,383 - 80,545,297 (-)NCBI
RefSeq Acc Id: XM_039107795   ⟹   XP_038963723
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8481,867,354 - 81,875,809 (-)NCBI
mRatBN7.2480,534,659 - 80,545,297 (-)NCBI
RefSeq Acc Id: XM_039107796   ⟹   XP_038963724
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8481,869,012 - 81,875,809 (-)NCBI
mRatBN7.2480,538,383 - 80,545,297 (-)NCBI
RefSeq Acc Id: XM_063286263   ⟹   XP_063142333
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8481,867,354 - 81,875,809 (-)NCBI
RefSeq Acc Id: XM_063286264   ⟹   XP_063142334
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8481,867,354 - 81,875,809 (-)NCBI
RefSeq Acc Id: XM_063286265   ⟹   XP_063142335
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8481,868,121 - 81,875,809 (-)NCBI
RefSeq Acc Id: XM_063286267   ⟹   XP_063142337
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8481,867,354 - 81,875,809 (-)NCBI
RefSeq Acc Id: XM_063286268   ⟹   XP_063142338
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8481,867,354 - 81,875,809 (-)NCBI
RefSeq Acc Id: XR_005503250
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8481,867,354 - 81,875,809 (-)NCBI
mRatBN7.2480,536,725 - 80,545,297 (-)NCBI
RefSeq Acc Id: XR_005503252
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8481,867,354 - 81,875,809 (-)NCBI
mRatBN7.2480,536,725 - 80,545,297 (-)NCBI
RefSeq Acc Id: XR_010065664
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8481,867,354 - 81,875,809 (-)NCBI
RefSeq Acc Id: XR_010065665
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8481,867,354 - 81,875,809 (-)NCBI
RefSeq Acc Id: XR_010065666
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8481,867,354 - 81,875,809 (-)NCBI
RefSeq Acc Id: XR_010065667
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8481,867,354 - 81,875,809 (-)NCBI
RefSeq Acc Id: XR_010065668
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8481,867,354 - 81,875,809 (-)NCBI
RefSeq Acc Id: XR_010065669
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8481,867,354 - 81,875,809 (-)NCBI
RefSeq Acc Id: XR_010065670
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8481,867,354 - 81,875,809 (-)NCBI
RefSeq Acc Id: XR_010065671
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8481,867,354 - 81,875,809 (-)NCBI
RefSeq Acc Id: XR_010065672
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8481,867,354 - 81,875,809 (-)NCBI
RefSeq Acc Id: XR_010065673
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8481,867,354 - 81,875,809 (-)NCBI
RefSeq Acc Id: XR_010065674
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8481,867,354 - 81,875,809 (-)NCBI
RefSeq Acc Id: NP_001098083   ⟸   NM_001104613
- UniProtKB: A7VJC4 (UniProtKB/Swiss-Prot),   A7VJC3 (UniProtKB/Swiss-Prot),   A7VJC2 (UniProtKB/Swiss-Prot),   A7VJC1 (UniProtKB/Swiss-Prot),   F1LNF1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000015325   ⟸   ENSRNOT00000015325
RefSeq Acc Id: ENSRNOP00000015152   ⟸   ENSRNOT00000015152
RefSeq Acc Id: XP_038963721   ⟸   XM_039107793
- Peptide Label: isoform X2
- UniProtKB: A7VJC4 (UniProtKB/Swiss-Prot),   A7VJC3 (UniProtKB/Swiss-Prot),   A7VJC2 (UniProtKB/Swiss-Prot),   A7VJC1 (UniProtKB/Swiss-Prot),   A0A8I5Y7N4 (UniProtKB/TrEMBL),   A6K0N6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963723   ⟸   XM_039107795
- Peptide Label: isoform X3
- UniProtKB: A0A8I5YC50 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963718   ⟸   XM_039107790
- Peptide Label: isoform X1
- UniProtKB: A7VJC4 (UniProtKB/Swiss-Prot),   A7VJC3 (UniProtKB/Swiss-Prot),   A7VJC2 (UniProtKB/Swiss-Prot),   A7VJC1 (UniProtKB/Swiss-Prot),   F1LNF1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963717   ⟸   XM_039107789
- Peptide Label: isoform X1
- UniProtKB: A7VJC4 (UniProtKB/Swiss-Prot),   A7VJC3 (UniProtKB/Swiss-Prot),   A7VJC2 (UniProtKB/Swiss-Prot),   A7VJC1 (UniProtKB/Swiss-Prot),   F1LNF1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963719   ⟸   XM_039107791
- Peptide Label: isoform X1
- UniProtKB: A7VJC4 (UniProtKB/Swiss-Prot),   A7VJC3 (UniProtKB/Swiss-Prot),   A7VJC2 (UniProtKB/Swiss-Prot),   A7VJC1 (UniProtKB/Swiss-Prot),   F1LNF1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963724   ⟸   XM_039107796
- Peptide Label: isoform X4
- UniProtKB: A0A8I5YC50 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963720   ⟸   XM_039107792
- Peptide Label: isoform X2
- UniProtKB: A7VJC4 (UniProtKB/Swiss-Prot),   A7VJC3 (UniProtKB/Swiss-Prot),   A7VJC2 (UniProtKB/Swiss-Prot),   A7VJC1 (UniProtKB/Swiss-Prot),   A0A8I5Y7N4 (UniProtKB/TrEMBL),   A6K0N6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963722   ⟸   XM_039107794
- Peptide Label: isoform X3
- UniProtKB: A0A8I5YC50 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000077328   ⟸   ENSRNOT00000116353
RefSeq Acc Id: ENSRNOP00000078023   ⟸   ENSRNOT00000110985
RefSeq Acc Id: XP_063142338   ⟸   XM_063286268
- Peptide Label: isoform X4
- UniProtKB: A0A8I5YC50 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142337   ⟸   XM_063286267
- Peptide Label: isoform X4
- UniProtKB: A0A8I5YC50 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142333   ⟸   XM_063286263
- Peptide Label: isoform X2
- UniProtKB: A7VJC4 (UniProtKB/Swiss-Prot),   A7VJC3 (UniProtKB/Swiss-Prot),   A7VJC2 (UniProtKB/Swiss-Prot),   A7VJC1 (UniProtKB/Swiss-Prot),   A0A8I5Y7N4 (UniProtKB/TrEMBL),   A6K0N6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142334   ⟸   XM_063286264
- Peptide Label: isoform X2
- UniProtKB: A7VJC4 (UniProtKB/Swiss-Prot),   A7VJC3 (UniProtKB/Swiss-Prot),   A7VJC2 (UniProtKB/Swiss-Prot),   A7VJC1 (UniProtKB/Swiss-Prot),   A0A8I5Y7N4 (UniProtKB/TrEMBL),   A6K0N6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142335   ⟸   XM_063286265
- Peptide Label: isoform X3
- UniProtKB: A0A8I5YC50 (UniProtKB/TrEMBL)
Protein Domains
RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A7VJC2-F1-model_v2 AlphaFold A7VJC2 1-353 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693049
Promoter ID:EPDNEW_R3570
Type:single initiation site
Name:Hnrnpa2b1_1
Description:heterogeneous nuclear ribonucleoprotein A2/B1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0481,241,108 - 81,241,168EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310403 AgrOrtholog
BioCyc Gene G2FUF-44856 BioCyc
Ensembl Genes ENSRNOG00000011175 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000015152 ENTREZGENE
  ENSRNOT00000015152.7 UniProtKB/TrEMBL
  ENSRNOT00000015325.7 UniProtKB/TrEMBL
  ENSRNOT00000110985.1 UniProtKB/TrEMBL
  ENSRNOT00000116353.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7304822 IMAGE-MGC_LOAD
InterPro HnRNPA1 UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
  hnRNPA2B1_RRM1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:362361 UniProtKB/Swiss-Prot
MGC_CLONE MGC:188152 IMAGE-MGC_LOAD
NCBI Gene 362361 ENTREZGENE
PANTHER HOMOLOGOUS TO DROSOPHILA SQD (SQUID) PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR48026:SF13 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam HnRNPA1 UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
  RRM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Hnrnpa2b1 PhenoGen
PROSITE RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000011175 RatGTEx
SMART RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I5Y7N4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5YC50 ENTREZGENE, UniProtKB/TrEMBL
  A6K0N6 ENTREZGENE, UniProtKB/TrEMBL
  A7VJC1 ENTREZGENE
  A7VJC2 ENTREZGENE
  A7VJC3 ENTREZGENE
  A7VJC4 ENTREZGENE
  B2GV69_RAT UniProtKB/TrEMBL
  F1LM82_RAT UniProtKB/TrEMBL
  F1LNF1 ENTREZGENE, UniProtKB/TrEMBL
  ROA2_RAT UniProtKB/Swiss-Prot
UniProt Secondary A7VJC1 UniProtKB/Swiss-Prot
  A7VJC3 UniProtKB/Swiss-Prot
  A7VJC4 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-04 Hnrnpa2b1  heterogeneous nuclear ribonucleoprotein A2/B1  Hnrpa2b1_predicted  heterogeneous nuclear ribonucleoprotein A2/B1 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-12 Hnrpa2b1_predicted  heterogeneous nuclear ribonucleoprotein A2/B1 (predicted)      Symbol and Name status set to approved 70820 APPROVED