Hoxa3 (homeobox A3) - Rat Genome Database

Name: Hoxa3
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Hoxa3 (homeobox A3) Rattus norvegicus

Analyze

Symbol:

Hoxa3

Name:

homeobox A3

RGD ID:

1561431

Description:

Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; HMG box domain binding activity; and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in several processes, including angiogenesis; embryonic skeletal system morphogenesis; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including endocrine system development; skeletal system development; and specification of animal organ position. Predicted to be located in nucleoplasm. Predicted to be active in nucleus. Orthologous to human HOXA3 (homeobox A3); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; all-trans-retinoic acid; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

homeobox protein Hox-A3; homeobox protein Hox-A3-like; LOC100911474; LOC108348320; LOC500125; RGD1561431; similar to homeobox-containing transcription factor

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	HOXA3 (homeobox A3)	HGNC	Ensembl, Inparanoid, NCBI, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Hoxa3 (homeobox A3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	HOXA3 (homeobox A3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	HOXA3 (homeobox A3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Hoxa3 (homeobox A3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	HOXA3 (homeobox A3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Hoxa3 (homeobox A3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Danio rerio (zebrafish):	hoxa3a (homeobox A3a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	hoxa3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	4	81,269,243 - 81,313,218 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	81,269,243 - 81,313,218 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	86,491,096 - 86,535,002 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	82,266,490 - 82,310,388 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	80,693,570 - 80,737,530 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	82,137,802 - 82,181,836 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	82,138,683 - 82,141,385 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	146,804,633 - 146,819,198 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	80,468,987 - 80,513,111 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	4	76,160,478 - 76,203,979 (-)	NCBI		Celera
Cytogenetic Map	4	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

congenital heart disease (ISO)

Craniofacial Abnormalities (ISO)

DiGeorge syndrome (ISS)

Experimental Liver Cirrhosis (ISO)

genetic disease (ISO)

Lymphatic Abnormalities (ISO)

pleomorphic xanthoastrocytoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (EXP,ISO)

all-trans-retinol (ISO)

amosite asbestos (ISO)

antirheumatic drug (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

buta-1,3-diene (ISO)

butanal (ISO)

CGP 52608 (ISO)

chlordecone (ISO)

chlorpyrifos (ISO)

choline (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

diarsenic trioxide (ISO)

diuron (EXP)

doxorubicin (ISO)

folic acid (ISO)

fulvestrant (ISO)

gentamycin (EXP)

gold atom (ISO)

gold(0) (ISO)

iron dichloride (ISO)

L-methionine (ISO)

leflunomide (ISO)

lipopolysaccharide (ISO)

nickel atom (ISO)

nickel sulfate (ISO)

nitrofen (EXP)

ozone (ISO)

paracetamol (EXP,ISO)

paraquat (ISO)

quercetin (ISO)

resveratrol (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

serpentine asbestos (ISO)

trichloroethene (EXP)

triclosan (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

angiogenesis (ISO)

animal organ formation (ISO)

animal organ morphogenesis (ISO)

anterior/posterior pattern specification (IBA,ISO)

blood vessel remodeling (ISO)

cartilage development (ISO)

cell population proliferation (ISO)

embryonic skeletal system development (ISO)

embryonic skeletal system morphogenesis (IBA,ISO)

gene expression (ISO)

glossopharyngeal nerve morphogenesis (ISO)

parathyroid gland development (ISO)

positive regulation of stem cell proliferation (ISO)

regulation of transcription by RNA polymerase II (IBA)

specification of animal organ position (ISO)

stem cell proliferation (ISO)

thymus development (ISO)

thyroid gland development (ISO)

Cellular Component

nucleoplasm (IEA,ISO)

nucleus (IBA)

Molecular Function

DNA-binding transcription factor activity (ISO)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

HMG box domain binding (ISO)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:7635047	PMID:7913519	PMID:8889548	PMID:9441667	PMID:9520319	PMID:9524238	PMID:11476574	PMID:15100241	PMID:15632090	PMID:15714286	PMID:16582099	PMID:17972163
PMID:19968565	PMID:21170035

Genomics

Comparative Map Data

Hoxa3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	4	81,269,243 - 81,313,218 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	81,269,243 - 81,313,218 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	86,491,096 - 86,535,002 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	82,266,490 - 82,310,388 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	80,693,570 - 80,737,530 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	82,137,802 - 82,181,836 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	82,138,683 - 82,141,385 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	146,804,633 - 146,819,198 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	80,468,987 - 80,513,111 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	4	76,160,478 - 76,203,979 (-)	NCBI		Celera
Cytogenetic Map	4	q24	NCBI

HOXA3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	27,107,010 - 27,152,583 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	27,106,184 - 27,152,583 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	27,146,629 - 27,192,202 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	27,112,334 - 27,133,164 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	7	26,919,048 - 26,926,856	NCBI
Celera	7	27,134,746 - 27,155,577 (-)	NCBI		Celera
Cytogenetic Map	7	p15.2	NCBI
HuRef	7	27,026,400 - 27,047,209 (-)	NCBI		HuRef
CHM1_1	7	27,145,506 - 27,166,350 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	7	27,242,907 - 27,288,574 (-)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	27,196,962 - 27,217,794 (-)	NCBI

Hoxa3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	52,146,039 - 52,190,316 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	52,146,042 - 52,190,316 (-)	Ensembl		GRCm39 Ensembl
GRCm38	6	52,169,059 - 52,213,067 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	52,169,062 - 52,213,336 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	52,119,061 - 52,163,066 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	52,098,645 - 52,130,525 (-)	NCBI		MGSCv36	mm8
Celera	6	52,690,723 - 52,734,719 (-)	NCBI		Celera
Cytogenetic Map	6	B3	NCBI
cM Map	6	25.4	NCBI

HOXA3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	18	45,454,213 - 45,466,537 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	18	45,421,542 - 45,467,803 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	18	50,084,463 - 50,100,942 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

HOXA3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	31,241,900 - 31,261,900 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	21	31,258,142 - 31,261,952 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666042	73,471,147 - 73,517,512 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Hoxa3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624739	3,478,406 - 3,498,333 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624739	3,453,358 - 3,498,061 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Hoxa3
139 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	50
Count of miRNA genes:	40
Interacting mature miRNAs:	48
Transcripts:	ENSRNOT00000008447
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2303168	Bp330	Blood pressure QTL 330	4.25	0.017	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	5214602	146446691	Rat
631261	Tcas3	Tongue tumor susceptibility QTL 3	6.88		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	4	10814170	91360527	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	11320076	180699135	Rat
12798520	Anxrr55	Anxiety related response QTL 55	4.45	0.01	locomotor behavior trait (VT:0001392)	number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)	4	32583980	114627242	Rat
8552782	Vie1	Viral induced encephalitis QTL 1	26.4		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	4	34430484	82490359	Rat
8552801	Bw143	Body weight QTL 143	7.3		body mass (VT:0001259)	change in body weight to body weight ratio (CMO:0002216)	4	34430484	82490359	Rat
8552809	Vie5	Viral induced encephalitis QTL 5	25.3		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	4	34430484	82490359	Rat
8655961	Kidm43	Kidney mass QTL 43	18		kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	4	36303261	103194984	Rat
1358352	Srcrt3	Stress Responsive Cort QTL 3	2.29		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	38465774	146803430	Rat
1300139	Hrtrt6	Heart rate QTL 6	2.85		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	4	39524264	116179656	Rat
61445	Strs3	Sensitivity to stroke QTL 3	3		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	4	40433388	85433388	Rat
8694439	Bw168	Body weight QTL 168	9.57	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	4	40433414	85433414	Rat
6893678	Bw108	Body weight QTL 108	2.6	0.006	body mass (VT:0001259)	body weight (CMO:0000012)	4	43457976	88457976	Rat
1576305	Emca6	Estrogen-induced mammary cancer QTL 6	5.8		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	4	44463720	155883716	Rat
1354612	Foco1	Food consumption QTL 1	8.87		eating behavior trait (VT:0001431)	food intake rate (CMO:0000427)	4	44463908	148090542	Rat
1354660	Salc1	Saline consumption QTL 1	11.26		drinking behavior trait (VT:0001422)	saline drink intake rate (CMO:0001627)	4	44463908	148090542	Rat
2312567	Glom19	Glomerulus QTL 19	1.9	0.006	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	4	45456990	146803430	Rat
1298082	Stresp4	Stress response QTL 4			blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	50119848	146803430	Rat
70200	Alc18	Alcohol consumption QTL 18	9.2		drinking behavior trait (VT:0001422)	ethanol intake volume to total fluid intake volume ratio (CMO:0001591)	4	56647873	149491524	Rat
1641833	Alc21	Alcohol consumption QTL 21	8.6	0.0001	drinking behavior trait (VT:0001422)	ethanol drink intake rate (CMO:0001407)	4	56698790	126192555	Rat
631546	Bp86	Blood pressure QTL 86	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	57114432	91360801	Rat
1358363	Sradr3	Stress Responsive Adrenal Weight QTL 3	6.19		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	4	57486946	102486946	Rat
1558651	Swd3	Spike wave discharge measurement QTL 3	4.62	0.000024	brain electrophysiology trait (VT:0010557)	brain spike-and-wave discharge frequency (CMO:0001742)	4	58432133	92991462	Rat
738009	Sach4	Saccharine consumption QTL 4	4.9	0.000016	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	4	59948935	154902892	Rat
738016	Alc16	Alcohol consumption QTL 16	3.6	0.00015	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	59948935	154902892	Rat
738031	Alc14	Alcohol consumption QTL 14	7.6	0.00003	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	59948935	154902892	Rat
1578657	Bss12	Bone structure and strength QTL 12	8.9		femur morphology trait (VT:0000559)	femoral neck cross-sectional area (CMO:0001697)	4	60220938	105220938	Rat
1578658	Bss13	Bone structure and strength QTL 13	8		femur strength trait (VT:0010010)	femoral neck polar moment of inertia (CMO:0001670)	4	60220938	105220938	Rat
2300179	Bmd50	Bone mineral density QTL 50	5.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	4	60928534	105928534	Rat
1549843	Bw53	Body weight QTL 53		0.0001	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	61697658	103194791	Rat
1549839	Bw52	Body weight QTL 52		0.0001	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	61697658	115089733	Rat
61418	Pia5	Pristane induced arthritis QTL 5	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	62277855	128289560	Rat
6478743	Anxrr40	Anxiety related response QTL 40		0.83076	defecation behavior trait (VT:0010462)	defecation rate (CMO:0000998)	4	62753847	107753847	Rat
6478772	Anxrr49	Anxiety related response QTL 49		0.15488	defecation behavior trait (VT:0010462)	defecation rate (CMO:0000998)	4	62753847	107753847	Rat
6478684	Anxrr30	Anxiety related response QTL 30		0.00087	defecation behavior trait (VT:0010462)	defecation rate (CMO:0000998)	4	62753847	107753847	Rat
631651	Bp124	Blood pressure QTL 124	3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	62879517	107879517	Rat
7394826	Bw126	Body weight QTL 126		0.002	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	62933269	87483707	Rat
8552807	Vie4	Viral induced encephalitis QTL 4	7.3		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	4	62933508	82490359	Rat
70192	BpQTLcluster5	Blood pressure QTL cluster 5	4.183		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	4	62933508	114921294	Rat
70192	BpQTLcluster5	Blood pressure QTL cluster 5	4.183		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	62933508	114921294	Rat
70192	BpQTLcluster5	Blood pressure QTL cluster 5	4.183		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	62933508	114921294	Rat
70192	BpQTLcluster5	Blood pressure QTL cluster 5	4.183		arterial blood pressure trait (VT:2000000)	percent change in mean arterial blood pressure (CMO:0002035)	4	62933508	114921294	Rat
70192	BpQTLcluster5	Blood pressure QTL cluster 5	4.183		arterial blood pressure trait (VT:2000000)	percent change in systolic blood pressure (CMO:0000747)	4	62933508	114921294	Rat
70192	BpQTLcluster5	Blood pressure QTL cluster 5	4.183		arterial blood pressure trait (VT:2000000)	absolute change in pulse pressure (CMO:0001882)	4	62933508	114921294	Rat
70192	BpQTLcluster5	Blood pressure QTL cluster 5	4.183		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	4	62933508	114921294	Rat
631674	Iddm14	Insulin dependent diabetes mellitus QTL 14			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	4	64528739	157573521	Rat
2312569	Pur19	Proteinuria QTL 19	3.4	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	4	65882107	96130297	Rat
61330	Eau1	Experimental allergic uveoretinitis QTL 1		0.0003	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	4	70362013	132642728	Rat
634344	Hcar7	Hepatocarcinoma resistance QTL 7	7.8		liver integrity trait (VT:0010547)	liver tumorous lesion area to total liver area ratio (CMO:0001075)	4	70808386	115808386	Rat
634344	Hcar7	Hepatocarcinoma resistance QTL 7	7.8		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	4	70808386	115808386	Rat
631646	Stl4	Serum triglyceride level QTL 4	6.5	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	4	73169846	132642728	Rat
724522	Bp146	Blood pressure QTL 146	2.2	0.0021	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	73630210	118630210	Rat
2302051	Pia28	Pristane induced arthritis QTL 28	5.3	0.001	blood autoantibody amount (VT:0003725)	serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)	4	73630210	118630210	Rat
70167	Bw22	Body weight QTL 22	3.1		body mass (VT:0001259)	body weight (CMO:0000012)	4	76647384	117676292	Rat
1357342	Bw40	Body weight QTL 40		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	4	76647384	117676292	Rat
631662	Hcar2	Hepatocarcinoma resistance QTL 2	3.1	0.0003	liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	4	78878504	123878504	Rat
631556	Bp135	Blood pressure QTL 135		0.017	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	78881294	117676292	Rat
2317586	Eae25	Experimental allergic encephalomyelitis QTL 25	9.300000190734863		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	4	78882817	83007655	Rat
2317586	Eae25	Experimental allergic encephalomyelitis QTL 25	9.300000190734863		nervous system integrity trait (VT:0010566)	percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)	4	78882817	83007655	Rat
2317586	Eae25	Experimental allergic encephalomyelitis QTL 25	9.300000190734863		nervous system integrity trait (VT:0010566)	post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)	4	78882817	83007655	Rat
2317586	Eae25	Experimental allergic encephalomyelitis QTL 25	9.300000190734863		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis duration (CMO:0001424)	4	78882817	83007655	Rat
61364	Iddm2	Insulin dependent diabetes mellitus QTL 2			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	78885890	102684881	Rat
738015	Pia9	Pristane induced arthritis QTL 9	4.5	0.048	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	80694870	125694870	Rat
2306899	Bp338	Blood pressure QTL 338		0.071	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	81006124	120102625	Rat
1641919	Alc22	Alcohol consumption QTL 22		0.0005	drinking behavior trait (VT:0001422)	ethanol drink intake rate (CMO:0001407)	4	81192555	126192555	Rat

Markers in Region

RH127934

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	81,278,338 - 81,278,535 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	82,146,899 - 82,147,095	NCBI	Rnor6.0
Rnor_5.0	4	146,813,730 - 146,813,926	UniSTS	Rnor5.0
RGSC_v3.4	4	80,478,221 - 80,478,417	UniSTS	RGSC3.4
Celera	4	76,169,566 - 76,169,762	UniSTS
RH 3.4 Map	4	512.92	UniSTS
Cytogenetic Map	4	q24	UniSTS

RH133374

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	81,289,855 - 81,290,057 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	82,158,415 - 82,158,616	NCBI	Rnor6.0
Rnor_5.0	4	146,825,246 - 146,825,447	UniSTS	Rnor5.0
RGSC_v3.4	4	80,489,737 - 80,489,938	UniSTS	RGSC3.4
Celera	4	76,181,082 - 76,181,283	UniSTS
RH 3.4 Map	4	512.71	UniSTS
Cytogenetic Map	4	q24	UniSTS

Hoxa5

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	81,302,662 - 81,302,813 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	82,257,017 - 82,257,167	NCBI	Rnor6.0
Rnor_6.0	4	82,171,223 - 82,171,373	NCBI	Rnor6.0
Rnor_5.0	4	146,838,054 - 146,838,204	UniSTS	Rnor5.0
Rnor_5.0	4	146,923,848 - 146,923,998	UniSTS	Rnor5.0
RGSC_v3.4	4	80,502,545 - 80,502,695	UniSTS	RGSC3.4
Celera	4	76,193,372 - 76,193,522	UniSTS
Cytogenetic Map	4	q24	UniSTS

AW535210

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	81,310,690 - 81,310,865 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	82,265,056 - 82,265,230	NCBI	Rnor6.0
Rnor_6.0	4	82,179,261 - 82,179,435	NCBI	Rnor6.0
Rnor_5.0	4	146,931,887 - 146,932,061	UniSTS	Rnor5.0
Rnor_5.0	4	146,846,092 - 146,846,266	UniSTS	Rnor5.0
RGSC_v3.4	4	80,510,584 - 80,510,758	UniSTS	RGSC3.4
Celera	4	76,201,404 - 76,201,578	UniSTS
RH 3.4 Map	4	513.31	UniSTS
Cytogenetic Map	4	q24	UniSTS

AI170630

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	81,292,703 - 81,292,808 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	82,161,263 - 82,161,367	NCBI	Rnor6.0
Rnor_5.0	4	146,828,094 - 146,828,198	UniSTS	Rnor5.0
RGSC_v3.4	4	80,492,585 - 80,492,689	UniSTS	RGSC3.4
Celera	4	76,183,422 - 76,183,526	UniSTS
RH 3.4 Map	4	510.8	UniSTS
Cytogenetic Map	4	q24	UniSTS

stSG609349

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	81,302,015 - 81,302,234 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	82,256,369 - 82,256,587	NCBI	Rnor6.0
Rnor_6.0	4	82,170,575 - 82,170,793	NCBI	Rnor6.0
Rnor_5.0	4	146,837,406 - 146,837,624	UniSTS	Rnor5.0
Rnor_5.0	4	146,923,200 - 146,923,418	UniSTS	Rnor5.0
RGSC_v3.4	4	80,501,897 - 80,502,115	UniSTS	RGSC3.4
Celera	4	76,192,724 - 76,192,942	UniSTS
Cytogenetic Map	4	q24	UniSTS

MARC_6217-6218:992007117:1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	81,302,049 - 81,302,284 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	82,256,403 - 82,256,637	NCBI	Rnor6.0
Rnor_6.0	4	82,170,609 - 82,170,843	NCBI	Rnor6.0
Rnor_5.0	4	146,837,440 - 146,837,674	UniSTS	Rnor5.0
Rnor_5.0	4	146,923,234 - 146,923,468	UniSTS	Rnor5.0
RGSC_v3.4	4	80,501,931 - 80,502,165	UniSTS	RGSC3.4
Celera	4	76,192,758 - 76,192,992	UniSTS
Cytogenetic Map	4	q24	UniSTS

UniSTS:57649

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	81,302,195 - 81,302,539 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	82,256,549 - 82,256,893	NCBI	Rnor6.0
Rnor_6.0	4	82,170,755 - 82,171,099	NCBI	Rnor6.0
Rnor_5.0	4	146,837,586 - 146,837,930	UniSTS	Rnor5.0
Rnor_5.0	4	146,923,380 - 146,923,724	UniSTS	Rnor5.0
RGSC_v3.4	4	80,502,077 - 80,502,421	UniSTS	RGSC3.4
Celera	4	76,192,904 - 76,193,248	UniSTS
Cytogenetic Map	4	q24	UniSTS

ECD14332

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	81,277,357 - 81,277,860 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	82,145,918 - 82,146,420	NCBI	Rnor6.0
Rnor_5.0	4	146,812,749 - 146,813,251	UniSTS	Rnor5.0
RGSC_v3.4	4	80,477,240 - 80,477,742	UniSTS	RGSC3.4
Celera	4	76,168,585 - 76,169,087	UniSTS
Cytogenetic Map	4	q24	UniSTS

ECD16077

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	81,290,798 - 81,291,201 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	82,159,358 - 82,159,760	NCBI	Rnor6.0
Rnor_5.0	4	146,826,189 - 146,826,591	UniSTS	Rnor5.0
RGSC_v3.4	4	80,490,680 - 80,491,082	UniSTS	RGSC3.4
Cytogenetic Map	4	q24	UniSTS

UniSTS:467536

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	81,272,306 - 81,272,765 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	82,140,866 - 82,141,324	NCBI	Rnor6.0
Rnor_5.0	4	146,807,697 - 146,808,155	UniSTS	Rnor5.0
RGSC_v3.4	4	80,472,188 - 80,472,646	UniSTS	RGSC3.4
Celera	4	76,163,542 - 76,164,000	UniSTS
Cytogenetic Map	4	q24	UniSTS

UniSTS:467537

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	81,308,406 - 81,308,741 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	82,262,772 - 82,263,106	NCBI	Rnor6.0
Rnor_6.0	4	82,176,977 - 82,177,311	NCBI	Rnor6.0
Rnor_5.0	4	146,843,808 - 146,844,142	UniSTS	Rnor5.0
Rnor_5.0	4	146,929,603 - 146,929,937	UniSTS	Rnor5.0
RGSC_v3.4	4	80,508,300 - 80,508,634	UniSTS	RGSC3.4
Celera	4	76,199,120 - 76,199,454	UniSTS
Cytogenetic Map	4	q24	UniSTS

REN100363

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	81,270,145 - 81,270,396 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	82,138,705 - 82,138,955	NCBI	Rnor6.0
Rnor_5.0	4	146,805,536 - 146,805,786	UniSTS	Rnor5.0
RGSC_v3.4	4	80,470,027 - 80,470,277	UniSTS	RGSC3.4
Celera	4	76,161,381 - 76,161,631	UniSTS
Cytogenetic Map	4	q24	UniSTS

REN100375

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	81,272,797 - 81,273,064 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	82,141,357 - 82,141,623	NCBI	Rnor6.0
Rnor_5.0	4	146,808,188 - 146,808,454	UniSTS	Rnor5.0
RGSC_v3.4	4	80,472,679 - 80,472,945	UniSTS	RGSC3.4
Celera	4	76,164,033 - 76,164,299	UniSTS
Cytogenetic Map	4	q24	UniSTS

REN100436

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	81,285,485 - 81,285,734 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	82,154,045 - 82,154,293	NCBI	Rnor6.0
Rnor_5.0	4	146,820,876 - 146,821,124	UniSTS	Rnor5.0
RGSC_v3.4	4	80,485,367 - 80,485,615	UniSTS	RGSC3.4
Celera	4	76,176,712 - 76,176,960	UniSTS
Cytogenetic Map	4	q24	UniSTS

REN100444

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	81,287,492 - 81,287,769 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	82,156,052 - 82,156,328	NCBI	Rnor6.0
Rnor_5.0	4	146,822,883 - 146,823,159	UniSTS	Rnor5.0
RGSC_v3.4	4	80,487,374 - 80,487,650	UniSTS	RGSC3.4
Celera	4	76,178,719 - 76,178,995	UniSTS
Cytogenetic Map	4	q24	UniSTS

REN100464

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	81,291,636 - 81,291,870 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	82,160,196 - 82,160,429	NCBI	Rnor6.0
Rnor_5.0	4	146,827,027 - 146,827,260	UniSTS	Rnor5.0
RGSC_v3.4	4	80,491,518 - 80,491,751	UniSTS	RGSC3.4
Cytogenetic Map	4	q24	UniSTS

REN100507

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	81,301,094 - 81,301,346 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	82,255,448 - 82,255,699	NCBI	Rnor6.0
Rnor_6.0	4	82,169,654 - 82,169,905	NCBI	Rnor6.0
Rnor_5.0	4	146,836,485 - 146,836,736	UniSTS	Rnor5.0
Rnor_5.0	4	146,922,279 - 146,922,530	UniSTS	Rnor5.0
RGSC_v3.4	4	80,500,976 - 80,501,227	UniSTS	RGSC3.4
Celera	4	76,191,803 - 76,192,054	UniSTS
Cytogenetic Map	4	q24	UniSTS

REN100511

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	81,301,937 - 81,302,212 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	82,256,291 - 82,256,565	NCBI	Rnor6.0
Rnor_6.0	4	82,170,497 - 82,170,771	NCBI	Rnor6.0
Rnor_5.0	4	146,837,328 - 146,837,602	UniSTS	Rnor5.0
Rnor_5.0	4	146,923,122 - 146,923,396	UniSTS	Rnor5.0
RGSC_v3.4	4	80,501,819 - 80,502,093	UniSTS	RGSC3.4
Celera	4	76,192,646 - 76,192,920	UniSTS
Cytogenetic Map	4	q24	UniSTS

REN100512

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	81,302,197 - 81,302,454 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	82,256,551 - 82,256,808	NCBI	Rnor6.0
Rnor_6.0	4	82,170,757 - 82,171,014	NCBI	Rnor6.0
Rnor_5.0	4	146,837,588 - 146,837,845	UniSTS	Rnor5.0
Rnor_5.0	4	146,923,382 - 146,923,639	UniSTS	Rnor5.0
RGSC_v3.4	4	80,502,079 - 80,502,336	UniSTS	RGSC3.4
Celera	4	76,192,906 - 76,193,163	UniSTS
Cytogenetic Map	4	q24	UniSTS

REN100522

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	81,304,317 - 81,304,564 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	82,258,673 - 82,258,919	NCBI	Rnor6.0
Rnor_6.0	4	82,172,878 - 82,173,124	NCBI	Rnor6.0
Rnor_5.0	4	146,839,709 - 146,839,955	UniSTS	Rnor5.0
Rnor_5.0	4	146,925,504 - 146,925,750	UniSTS	Rnor5.0
RGSC_v3.4	4	80,504,201 - 80,504,447	UniSTS	RGSC3.4
Celera	4	76,195,021 - 76,195,267	UniSTS
Cytogenetic Map	4	q24	UniSTS

REN100563

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	81,313,405 - 81,313,640 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	82,267,771 - 82,268,005	NCBI	Rnor6.0
Rnor_6.0	4	82,181,976 - 82,182,210	NCBI	Rnor6.0
Rnor_5.0	4	146,848,807 - 146,849,041	UniSTS	Rnor5.0
Rnor_5.0	4	146,934,602 - 146,934,836	UniSTS	Rnor5.0
RGSC_v3.4	4	80,513,299 - 80,513,533	UniSTS	RGSC3.4
Celera	4	76,204,119 - 76,204,353	UniSTS
Cytogenetic Map	4	q24	UniSTS

REN100533

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	81,306,670 - 81,306,931 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	82,261,026 - 82,261,286	NCBI	Rnor6.0
Rnor_6.0	4	82,175,231 - 82,175,491	NCBI	Rnor6.0
Rnor_5.0	4	146,842,062 - 146,842,322	UniSTS	Rnor5.0
Rnor_5.0	4	146,927,857 - 146,928,117	UniSTS	Rnor5.0
RGSC_v3.4	4	80,506,554 - 80,506,814	UniSTS	RGSC3.4
Celera	4	76,197,374 - 76,197,634	UniSTS
Cytogenetic Map	4	q24	UniSTS

Hoxa5

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	81,301,920 - 81,302,068 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	82,256,274 - 82,256,421	NCBI	Rnor6.0
Rnor_6.0	4	82,170,480 - 82,170,627	NCBI	Rnor6.0
Rnor_5.0	4	146,837,311 - 146,837,458	UniSTS	Rnor5.0
Rnor_5.0	4	146,923,105 - 146,923,252	UniSTS	Rnor5.0
RGSC_v3.4	4	80,501,802 - 80,501,949	UniSTS	RGSC3.4
Celera	4	76,192,629 - 76,192,776	UniSTS
Cytogenetic Map	4	q24	UniSTS

Hoxa3

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	81,272,675 - 81,272,764 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	82,141,235 - 82,141,323	NCBI	Rnor6.0
Rnor_5.0	4	146,808,066 - 146,808,154	UniSTS	Rnor5.0
Celera	4	76,163,911 - 76,163,999	UniSTS
Cytogenetic Map	4	q24	UniSTS

Hoxa4

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	81,290,429 - 81,290,501 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	82,158,989 - 82,159,060	NCBI	Rnor6.0
Rnor_5.0	4	146,825,820 - 146,825,891	UniSTS	Rnor5.0
Cytogenetic Map	4	q24	UniSTS

Hoxa6

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	81,308,677 - 81,308,745 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	82,177,248 - 82,177,315	NCBI	Rnor6.0
Rnor_6.0	4	82,263,043 - 82,263,110	NCBI	Rnor6.0
Rnor_5.0	4	146,929,874 - 146,929,941	UniSTS	Rnor5.0
Rnor_5.0	4	146,844,079 - 146,844,146	UniSTS	Rnor5.0
Celera	4	76,199,391 - 76,199,458	UniSTS
Cytogenetic Map	4	q24	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium
Low	2	8	7	6	3	6	1	4	13	34	34	11	1
Below cutoff	1	30	40	28	13	28	6	6	7	1	5		6

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001313820	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006224928	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006224929	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006236526	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006236527	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006257707	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008762939	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008773712	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008775738	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106897	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AA901299	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC122669	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000142	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000008447 ⟹ ENSRNOP00000008447

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	81,269,243 - 81,313,218 (-)	Ensembl
Rnor_6.0 Ensembl	4	82,138,683 - 82,141,385 (-)	Ensembl

RefSeq Acc Id:

NM_001313820 ⟹ NP_001300749

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	81,269,243 - 81,313,218 (-)	NCBI

RefSeq Acc Id:

XM_006257707 ⟹ XP_006257769

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	81,269,243 - 81,275,933 (-)	NCBI

Sequence:

show sequence

GGGAGGGGAGGGGGTCCAGCCGCCCCAGTCCGCCGGGGGCCAGCCGCCGGAGCAGCTAGCGGTC
CGCCTCTCCGCCGAGTCCCGGCCTTGGGGTCTCCGGCCCGCACGCCCGCCCGCACGCCGGCTCG
GCGGATGCTGAGGGTCGGTGGCCATCCCGCGCCGAGGGGACCCGGGGCCGCAGCCTGAGCCCGA
GCCCGCGGCGGCCGTCAGAAGTTAAGGTCTGCGCGCGGCGGCCATTGGCGGCGGAGTGTCACGT
GACTGCGGGGGCGTGCCAATGTGCTCCCTTACGGGTGTCAAGCCCTTGTCAGAGAGTGTGATCA
CGATCGTGAAACATCGCGATGCAAAAAGCGACCTACTACGACAGCTCGGCGATCTACGGTGGCT
ACCCCTACCAAGCAGCCAATGGGTTCGCTTACAATGCCAGTCAGCAGCCATACGCGCCGTCCGC
CACTCTGGGCACGGATGGTGTTGAGTACCATCGACCCGCCTGCTCCCTCCAGTCTCCCGCCAGC
GCTGGGGCCCACCCCAAAAGTCATGAGCTGAGCGAAGCTTGTCTGCGCACCCTGAGCGGGCCTC
CTAGCCAGCCCCCAGGCCTGGGTGATCCACCTTTGCCTCCACCTCCTCCCCAGGCAGCGCCCCC
AGCCCCCCAGCCTCCACAGCCCCCACCACAGCCCCCTGCACCCACCCCTGCAGCTCCTCCGCCT
CCCTCATCTGTCTCTCCCCCTCAAAGTGCCAACAGCAACCCTACCCCTGCCAGCACAGCCAAGA
GCCCCCTGCTCAACTCTCCCACCGTGGGCAAACAAATCTTTCCCTGGATGAAAGAGTCAAGGCA
GAACACTAAGCAGAAAACCAGCGGCTCCAGCTCAGGGGAGAGCTGCGCTGGTGACAAGAGCCCG
CCTGGGCAGGCTTCGTCCAAGCGCGCGCGCACGGCGTACACGAGCGCGCAGCTGGTGGAGCTGG
AGAAGGAGTTCCACTTCAACCGCTACCTATGCCGGCCGCGCCGAGTGGAGATGGCCAACCTGCT
GAACCTCACCGAGCGCCAGATCAAGATCTGGTTCCAGAACCGCCGTATGAAGTACAAGAAGGAC
CAGAAGGGCAAAGGCATGCTGACTTCGTCTGGGGGCCAGTCCCCAAGTCGTAGCCCTGTGCCTC
CCGGTGCAGGAGGTTATCTGAATTCTATGCATTCGCTGGTCAACAGTGTCCCATATGAGCCCCA
GTCACCCCCTCCTTTCTCCAAGCCCCCCCAAGGCGCCTACGGGTTGCCTCCGGCCTCCTACCCT
GCTCCCCTGCCCAGTTGCGCTCCCCCACCTCCCCCACAGAAACGCTACACAGCGGCGGGGTCAG
GCGCAGGGGGCACCCCTGAGTACGACCCACATGCTCACGGCCTGCAGGGCAACGGCAGCTATGG
GACCCCACACTTACAGGGAAGCCCCGTCTTCGTAGGGGGCAGCTATGTGGAGCCCATGGGCAAC
TCTGGGCCAGCACTCTTTGGCCTAACTCACCTCCCCCACACCACCTCGGCTGCCGTGGACTACG
GGGGCTCTGGGCCGCTGGGCAGCGGTCACCACCATGGGCCTGGGCCTGGGGAGCCACACCCCAC
CTACACGGACCTTACTGCCCACCATCCTTCTCAGGGAAGAATTCAGGAAGCGCCCAAGCTCACC
CACCTGTGATGATGGGCTGGGGCTGCAAGCCAGGAGAGTTGCCCACCCAACCTTCTTTGGTTTC
TTTTTCCTCTGTTTTGTTTTGTTTTATGTTCTTCTCGCCTTTCCCCTTTCTCCTCTGCACCTCT
CCCTCATTTTCCCCCTTCGGTAATGCGTTTTTATAGTTTATGTGACGTAGCAATCTTGGTTGCT
GGAAAGGCTGTCAGTATCAGTAGCAACATTTACTACCACCCCTCCTCGCCCTGGCCTCTGGCCC
TGCACCCTCTACCCTCTCTACTCTTCGATAAGAAACAGGGTATATGAACAAACTTTCTAGTCGA
GTTTTCAATGTGAATTTGTTCATACTTTATGGCTCCCGAGAGGAAGCAACTGCGTTTTTTTTTT
TAAGTTTTAGTTTTTAAAATTGCACTTCTTGTAATGATCGAGAAAAAGAAATCAAAGGCGCTTT
GAAACAGGGACTCCCTGTGCAAAGTTGACTAAGTGTACGTCTTTCCGTGTGTGTGTGCTGGTGA
ACAGTCAGATTTATTTATATTTTTTTGCAAGCATTGAATAGTCTAAGTTTTAAATATTATTTAT
CCCCATCCGTTCGTATTTATATTAAAGAAATTCTGTACCCTGATTGTTCAGAAGGTTTCTTGAG
CCTTTTGTTCAATGGTGTATTGGCATACATATAAAATTTATTTGAAAGGGAAATAAAATTCCTT
TATAAAAACCGTAGCAATGCAATAAGAACAGAGAGGACCCAGAGTTTGAAAATAGTGGTTTAGG
TTTGTAACATCCGGCAAAACTGAACGCTAAAAATGCCAGATTTGTTTTGAGAGTTTTACATTCC
TTGCTGCTCACATTCTGAGAAACAAAACAAAAAAAAATAAAGTTTTTATTCTGATTAA

hide sequence

RefSeq Acc Id:

XM_008773712 ⟹ XP_008771934

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	81,269,243 - 81,280,619 (-)	NCBI

Sequence:

show sequence

AGGACAATTCGTCTCTTGGGCTGCCGAAGCGACAGCTGTCAGAGGGGCAGGAGCTTCTGGGAGC
TGCGGTCTGAAGGCTACGTGTGCTGCCTGGTCATTCAAAGTGTCAATTTTAGGTCCAGAAGTGT
CCAAACCACAAGTTCTCAGAACTCTCTGAAAAAAAATGGCTCCCTCCATGTTAAGAGTGCCTGG
ACACCGGAGAAAAAGATTCCCTGAGCACCTGGAACCGGAGACCATTCCTGGTCTCGGATTTAAA
CATCTTTGGAGGTAAGCATTGCACCAAACTCTTCCCCAGGCTTGGGATTTTGCACCAGGAGGCT
GGGAGGAGTGCACCTCCCCAGCTCCTGGCAAGTAGAGCTGGTTGAAAGAGGTTTTGGTCAATAT
TTAACTTTGGCAGAGTTTGGAGCTGGGCTCCCGGAGGACCATGTGGGCACGAGGTAGACAAAGA
GCAGGCTGCAAAGCCTGCAGTAGGCAGAGAGTGCAGAAGCAAAAGATGAGGTGGGGAGAGCCTG
AGGGAGTGTGTTTGTGTCTTCTTAAAAGCCCTAAACAGGCCACTATACCCAACTGTAAAGCAGA
AACAAGAAGGGGCCAGGGCAGCAGAGTGGCCGCAGTGTGGGCTGTGCTGTGGATCCAGCCACAG
CTCTGGGTTGAGAAAACTTGTCTCCACTACCTACATTTTCTCTGCCCCTTCTGCAGCCTTTCCA
GTGTGTAGGCCTTGCAGAGCCTGCCCCCAGTCTCTTATCAGAGCAGATCCACAGTGCTTCCCAC
AGCCAAAGCTCAGATCCTCTATGTCTGAATGTTTTTTCTTTTTCTGTTTGGAACAAGGGAAAAA
CTCTTTAAAATTCTTTTCAAGTTCTGGCTTAATTTGTTCTCTTAGTTTGAGATGCAGGGAGGTA
ATTACTGTGGTTTATTACCTTGTAAAAGAGCCATAAATTATGGGCCTGTTTGGGGGAGGGGCTG
CTGGAATAGCTTTCAGAAGCTTGGTATGAACGGTTGAGCTTGCTTTGTTCTTTCAGGGGTTAAT
TTTCTTCTTCTTGGGCTGGGAATGGAACCCAGGGCCTCTGAGCAAACTGGGCAAGTATCATTGA
GCTATGAGGTGTCTCCAACTCAGGGATTGCTTCTTACAACAACAGCAGCAACAACAACAAGCAC
AACCACCACCTCCAGATTTTGTTTTCTGTTTCCTAGGTCCAAATTTTTCCTAAAATTTGCTCCC
CAGAAAGATATCAGATTGCTAATTAATTGCAACATGCTACTCAGTGGTGCTCTAAGGCTGGAGT
GTGGTTTTGGGATACAATTATTTTTATCAGATAGGAAGTAAACAGTCTTCGTAATGGAGTTACT
TTCTCACCTACAGGTTGTCTGTATATATCAAGGATGGGGGACTTACAGCTTTGCTTTGCATATC
TGCAAACGACAGGACAATTGTCACTATTAAAAGCTGCAGGAGTATTACACGATATAAACATCCA
CTTGTGTCTAGAGAGCTTGGAGCCCCTTTGTACCCAGAGGAAATAACTCATGTTAAATAAAGAT
TTATCATTTGAGGGTAGTTTTGATAGAGAAATCAGATTGCAGTGTTTGAGTACAGATATATCTA
ATCTGCCAACAGCCAGGCAAATATTGACTAATGGTCTGCATGCTTGGTCACCTGCTACTTCCAA
GCCAACTTTCCCTCAATTTGGCTCTGGTGGCCTGGTTCAGAGTGTGGGTTCTCAGCGCTGGTGG
AGTGGGGTGAGTGGAAAGGGGCTAGTGACTTTCCCACTGACCCCCACCCCCCAGTTTTGCTTCA
GCTGCTGGGTCCCCTGTGTGGGCTCTCCAACCTAAGCTGTTTTTTTTCCCCATCATAAATTAAA
TTTCCTTGGACTTCCTTGGATTTCTTTTCCCTTCTCAGCCCCACGACCAACAATCCTTAATCTT
AATTTTCAAGCAGCAGTTGGAGCATCAGTGGGTATGTTGGTCACAGAGGCTCCAGCATGGGACT
GAGATGCCAATGGGCCTCAGTGAAGTTAAGCCATTTCTCTGAAGCAGCACCAGAGAGGCTGCTA
CTATTGATTTATGGCCTTCAGAGTCTCAGCTTGCTTGAAACTGTTGAAAGAGTTCTGAAGGGGG
TTCTTCTTATCTTCCAACCGATACCACGGCAAAAACGAGGGGGGGGGGTTCTCAGTGACTTGGC
CATATTTCTAGGTCCTTTTCTATGCAATTTGAAAAGCTGGTTGTGAATGACTGTGGAATGAGTA
TCACATGCAGCAGAAGACACAAAAGATGAGTGGATTGAATTCTTGGGGGACAGAACACTCTATT
TTGGAAGCCAGCATTTGGTCTGTTTCTTATCTCCCAAACCTGGGCCAGGAAAGTTTGGATTCTT
ACTTTCCGGCTACTGATGGCTACTGACTTAGGTCGTGGCTAAGGGAGTTTCTATAAATCTTCTC
CCAGCTATCCCACAACCGGGTCTTGGAAGTATGACACCACCAGCTTTGGCTAGGACTGACTTGC
AAAGGGTCAGGACTCCCTTTTTATTGATACTGTAATTTGTACATTCTCATCCCTCATGAGATGT
CTCCTCTTTACTTGGGGCTTTAAGTTCTCAGCAGACCCCTTTTGGGTCCCTTCTGGAGAGAAAA
GTAGGGAGGCTCATACAGTTGCTACAGTTAAGCTCCCCACTTAGAGCCAGCTGAAGACTAACTC
TTCAGGAATAAGACTATGGCATTCTCAGAACACTCAAAGTTTAGAAATGAAAAGTGGGGAATTT
TTTAGATGGAAAAGTTGAGATGTGTGGGCTATGTCACCAAACAGAGAGGCAAGAGTAGGGGTAG
AGACTGGGAGGACAGTTTATTTGTTTTAGCCAGGTTCTACTAAGCAGAACCAGATCAGGTCAGT
TTCAGCTGGAAATGTGGAGTTGTCTGTCTTAGGGGTGAGTGTATAGAACAGTCTGAGGGGAGGG
TCTCAGGCTGACTTGCAGGTTAGCACATGACACTCCAGTGGTGTTCAGAGTTTCCCCCTATTTC
AGAGGCAATTAGGTCATTTCCTCTTACATTTTTCATCTTCAGAGACATATAATTTCATGTATCA
CTCAGCTATGCACTGAGGAAATGCATAAGTATGGGTTTGGCTAGGGCATTAGGTCTCTCCAGAA
TTAGCAAAATCCTGACCCACAACTCTGCAGCAGAACTCGGTTCTCCTAGTAGACTGCCTCTGAA
CGAAACCAAGTGGACTTGGAACAGAGACTTTAACATTTTGTCAGGTAATTATAGGTCCTTGGTT
TCATCAGTGGCTGTGGTGTATGGTGTGGGTGTTAGCAAACTCCATACAATTGCAGGCCATAAAA
GAAGTCTGCTGACGGATCCAGTGACTCTCGAGTCATTCCTGGGCTTGGCTCTTGCCTTTTGATT
GCTGGACTGTGGGTCAGAGAAGCCTGGAGGGGGTGGTGATTGGCCATGCTGAATTCAATTTGTC
TGTAAAGAGGAGGCCATGGGGAAAGTTAAGTGGACACTAAGAAGACAGACAGCATCACTGTTCC
CTTGTTTGGAGAGTGTGTAAAGAAATGTAAGTGGAGATAAGCATCTTTGTGTGGTGTGTATGTG
TGTGGGGTACCCCCCCTCACGCTCCTTCCTACTGGTAAGATAGAACTCCAACCCCGGACTGGTT
ACGTCCCCTACTTTTCCTCTCTCAAATCTAAATGTTCTGCTTGGAAACCTGGTTCCTTCAGTGA
TTCCCTATTTCAAATAAAAGGATTTAAGTTGACGTATGACCGACCACGTGAGCGCTTAATACGG
CACATTATTGTGGTATTTGGAGCGGAGACCCAGGCAGGCTTCATCTGCGATTACGTTCTCTAGA
TTCTCTTTAGAGCAAGAGCTTTTTCCCCCACCCCCACACACCCACCTCCTCCTCCTCCGTCTCC
TTCCCCTTCTCCGGAGCAAGCTCTCTTCCAGCCGCTTTCAGCTCTCATGGAGCAGTTCTGGGCA
AGCTAGCCGATGGGACTCCCAGCCACACCAGGAGGATGGAATTTATTTTAAGGTCTGCGCGCGG
CGGCCATTGGCGGCGGAGTGTCACGTGACTGCGGGGGCGTGCCAATGTGCTCCCTTACGGGTGT
CAAGCCCTTGTCAGAGAGTGTGATCACGATCGTGAAACATCGCGATGCAAAAAGCGACCTACTA
CGACAGCTCGGCGATCTACGGTGGCTACCCCTACCAAGCAGCCAATGGGTTCGCTTACAATGCC
AGTCAGCAGCCATACGCGCCGTCCGCCACTCTGGGCACGGATGGTGTTGAGTACCATCGACCCG
CCTGCTCCCTCCAGTCTCCCGCCAGCGCTGGGGCCCACCCCAAAAGTCATGAGCTGAGCGAAGC
TTGTCTGCGCACCCTGAGCGGGCCTCCTAGCCAGCCCCCAGGCCTGGGTGATCCACCTTTGCCT
CCACCTCCTCCCCAGGCAGCGCCCCCAGCCCCCCAGCCTCCACAGCCCCCACCACAGCCCCCTG
CACCCACCCCTGCAGCTCCTCCGCCTCCCTCATCTGTCTCTCCCCCTCAAAGTGCCAACAGCAA
CCCTACCCCTGCCAGCACAGCCAAGAGCCCCCTGCTCAACTCTCCCACCGTGGGCAAACAAATC
TTTCCCTGGATGAAAGAGTCAAGGCAGAACACTAAGCAGAAAACCAGCGGCTCCAGCTCAGGGG
AGAGCTGCGCTGGTGACAAGAGCCCGCCTGGGCAGGCTTCGTCCAAGCGCGCGCGCACGGCGTA
CACGAGCGCGCAGCTGGTGGAGCTGGAGAAGGAGTTCCACTTCAACCGCTACCTATGCCGGCCG
CGCCGAGTGGAGATGGCCAACCTGCTGAACCTCACCGAGCGCCAGATCAAGATCTGGTTCCAGA
ACCGCCGTATGAAGTACAAGAAGGACCAGAAGGGCAAAGGCATGCTGACTTCGTCTGGGGGCCA
GTCCCCAAGTCGTAGCCCTGTGCCTCCCGGTGCAGGAGGTTATCTGAATTCTATGCATTCGCTG
GTCAACAGTGTCCCATATGAGCCCCAGTCACCCCCTCCTTTCTCCAAGCCCCCCCAAGGCGCCT
ACGGGTTGCCTCCGGCCTCCTACCCTGCTCCCCTGCCCAGTTGCGCTCCCCCACCTCCCCCACA
GAAACGCTACACAGCGGCGGGGTCAGGCGCAGGGGGCACCCCTGAGTACGACCCACATGCTCAC
GGCCTGCAGGGCAACGGCAGCTATGGGACCCCACACTTACAGGGAAGCCCCGTCTTCGTAGGGG
GCAGCTATGTGGAGCCCATGGGCAACTCTGGGCCAGCACTCTTTGGCCTAACTCACCTCCCCCA
CACCACCTCGGCTGCCGTGGACTACGGGGGCTCTGGGCCGCTGGGCAGCGGTCACCACCATGGG
CCTGGGCCTGGGGAGCCACACCCCACCTACACGGACCTTACTGCCCACCATCCTTCTCAGGGAA
GAATTCAGGAAGCGCCCAAGCTCACCCACCTGTGATGATGGGCTGGGGCTGCAAGCCAGGAGAG
TTGCCCACCCAACCTTCTTTGGTTTCTTTTTCCTCTGTTTTGTTTTGTTTTATGTTCTTCTCGC
CTTTCCCCTTTCTCCTCTGCACCTCTCCCTCATTTTCCCCCTTCGGTAATGCGTTTTTATAGTT
TATGTGACGTAGCAATCTTGGTTGCTGGAAAGGCTGTCAGTATCAGTAGCAACATTTACTACCA
CCCCTCCTCGCCCTGGCCTCTGGCCCTGCACCCTCTACCCTCTCTACTCTTCGATAAGAAACAG
GGTATATGAACAAACTTTCTAGTCGAGTTTTCAATGTGAATTTGTTCATACTTTATGGCTCCCG
AGAGGAAGCAACTGCGTTTTTTTTTTTAAGTTTTAGTTTTTAAAATTGCACTTCTTGTAATGAT
CGAGAAAAAGAAATCAAAGGCGCTTTGAAACAGGGACTCCCTGTGCAAAGTTGACTAAGTGTAC
GTCTTTCCGTGTGTGTGTGCTGGTGAACAGTCAGATTTATTTATATTTTTTTGCAAGCATTGAA
TAGTCTAAGTTTTAAATATTATTTATCCCCATCCGTTCGTATTTATATTAAAGAAATTCTGTAC
CCTGATTGTTCAGAAGGTTTCTTGAGCCTTTTGTTCAATGGTGTATTGGCATACATATAAAATT
TATTTGAAAGGGAAATAAAATTCCTTTATAAAAACCGTAGCAATGCAATAAGAACAGAGAGGAC
CCAGAGTTTGAAAATAGTGGTTTAGGTTTGTAACATCCGGCAAAACTGAACGCTAAAAATGCCA
GATTTGTTTTGAGAGTTTTACATTCCTTGCTGCTCACATTCTGAGAAACAAAACAAAAAAAAAT
AAAGTTTTTATTCTGATTAA

hide sequence

RefSeq Acc Id:

XM_039106897 ⟹ XP_038962825

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	81,269,243 - 81,285,071 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001300749	(Get FASTA)	NCBI Sequence Viewer
	XP_006257769	(Get FASTA)	NCBI Sequence Viewer
	XP_008771934	(Get FASTA)	NCBI Sequence Viewer
	XP_038962825	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL88160	(Get FASTA)	NCBI Sequence Viewer
	EDL88162	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000008447
	ENSRNOP00000008447.3

RefSeq Acc Id:

ENSRNOP00000008447 ⟸ ENSRNOT00000008447

RefSeq Acc Id:	NP_001300749 ⟸ NM_001313820
- UniProtKB:	D3ZM81 (UniProtKB/TrEMBL), A6K0Q4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038962825 ⟸ XM_039106897
- Peptide Label:	isoform X1
- UniProtKB:	D3ZM81 (UniProtKB/TrEMBL), A6K0Q4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_008771934 ⟸ XM_008773712
- Peptide Label:	isoform X1
- UniProtKB:	D3ZM81 (UniProtKB/TrEMBL), A6K0Q4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQKATYYDSSAIYGGYPYQAANGFAYNASQQPYAPSATLGTDGVEYHRPACSLQSPASAGAHPK SHELSEACLRTLSGPPSQPPGLGDPPLPPPPPQAAPPAPQPPQPPPQPPAPTPAAPPPPSSVSP PQSANSNPTPASTAKSPLLNSPTVGKQIFPWMKESRQNTKQKTSGSSSGESCAGDKSPPGQASS KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGM LTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKPPQGAYGLPPASYPAPLPSC APPPPPQKRYTAAGSGAGGTPEYDPHAHGLQGNGSYGTPHLQGSPVFVGGSYVEPMGNSGPALF GLTHLPHTTSAAVDYGGSGPLGSGHHHGPGPGEPHPTYTDLTAHHPSQGRIQEAPKLTHL hide sequence

RefSeq Acc Id:	XP_006257769 ⟸ XM_006257707
- Peptide Label:	isoform X1
- UniProtKB:	D3ZM81 (UniProtKB/TrEMBL), A6K0Q4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQKATYYDSSAIYGGYPYQAANGFAYNASQQPYAPSATLGTDGVEYHRPACSLQSPASAGAHPK SHELSEACLRTLSGPPSQPPGLGDPPLPPPPPQAAPPAPQPPQPPPQPPAPTPAAPPPPSSVSP PQSANSNPTPASTAKSPLLNSPTVGKQIFPWMKESRQNTKQKTSGSSSGESCAGDKSPPGQASS KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGM LTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKPPQGAYGLPPASYPAPLPSC APPPPPQKRYTAAGSGAGGTPEYDPHAHGLQGNGSYGTPHLQGSPVFVGGSYVEPMGNSGPALF GLTHLPHTTSAAVDYGGSGPLGSGHHHGPGPGEPHPTYTDLTAHHPSQGRIQEAPKLTHL hide sequence

Protein Domains

Homeobox

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZM81-F1-model_v2	AlphaFold	D3ZM81	1-444	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1561431	AgrOrtholog
BioCyc Gene	G2FUF-44826	BioCyc
Ensembl Genes	ENSRNOG00000006281	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000008447	ENTREZGENE
	ENSRNOT00000008447.5	UniProtKB/TrEMBL
Gene3D-CATH	Homeodomain-like	UniProtKB/TrEMBL
InterPro	DUF4074	UniProtKB/TrEMBL
	Homeobox	UniProtKB/TrEMBL
	Homeobox_Antennapedia_CS	UniProtKB/TrEMBL
	Homeobox_CS	UniProtKB/TrEMBL
	Homeobox_region	UniProtKB/TrEMBL
	Homeodomain-like	UniProtKB/TrEMBL
NCBI Gene	Hoxa3	ENTREZGENE
PANTHER	HOMEOBOX PROTEIN HOX-A3	UniProtKB/TrEMBL
	PROTEIN ZERKNUELLT 1-RELATED	UniProtKB/TrEMBL
Pfam	DUF4074	UniProtKB/TrEMBL
	Homeobox	UniProtKB/TrEMBL
PhenoGen	Hoxa3	PhenoGen
PRINTS	HOMEOBOX	UniProtKB/TrEMBL
PROSITE	ANTENNAPEDIA	UniProtKB/TrEMBL
	HOMEOBOX_1	UniProtKB/TrEMBL
	HOMEOBOX_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000006281	RatGTEx
SMART	HOX	UniProtKB/TrEMBL
Superfamily-SCOP	Homeodomain_like	UniProtKB/TrEMBL
UniProt	A6K0Q4	ENTREZGENE, UniProtKB/TrEMBL
	D3ZM81	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Hoxa3	homeobox A3	LOC108348320	homeobox protein Hox-A3	Data merged from RGD:11499874	737654	PROVISIONAL
2016-08-02	LOC108348320	homeobox protein Hox-A3			Symbol and Name status set to provisional	70820	PROVISIONAL
2015-07-29	Hoxa3	homeobox A3	LOC100911474	homeobox protein Hox-A3-like	Data merged from RGD:6492758	737654	PROVISIONAL
2012-10-11	Hoxa3	homeobox A3	RGD1561431	similar to homeobox-containing transcription factor	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-07-05	LOC100911474	homeobox protein Hox-A3-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-04-30	RGD1561431	similar to homeobox-containing transcription factor	RGD1561431_predicted	similar to homeobox-containing transcription factor (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1561431_predicted	similar to homeobox-containing transcription factor (predicted)	LOC500125	similar to homeobox-containing transcription factor	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC500125	similar to homeobox-containing transcription factor			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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