Adcyap1r1 (ADCYAP receptor type I) - Rat Genome Database

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Gene: Adcyap1r1 (ADCYAP receptor type I) Rattus norvegicus
Analyze
Symbol: Adcyap1r1
Name: ADCYAP receptor type I
RGD ID: 2038
Description: Enables adenylate cyclase binding activity; neuropeptide binding activity; and small GTPase binding activity. Involved in several processes, including activation of phospholipase C activity; cAMP-mediated signaling; and positive regulation of intracellular signal transduction. Located in several cellular components, including bicellular tight junction; caveola; and rough endoplasmic reticulum. Biomarker of cystitis. Orthologous to human ADCYAP1R1 (ADCYAP receptor type I); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl; acetamide.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: ADCYAP receptor type 1; adenylate cyclase activating polypeptide 1 (pituitary) receptor type I; adenylate cyclase activating polypeptide 1 receptor 1; adenylate cyclase activating polypeptide 1 receptor type 1; adenylate cyclase activating polypeptide 1 type 1 receptor; PAC1-R; PACAP type I receptor; PACAP type IA receptor; PACAP-R-1; PACAP-R-1A; PACAP-R1; PACAP-R1A; PACAPR1; PACAPR1A; pituitary adenylate cyclase activating polypeptide 1 receptor (1); pituitary adenylate cyclase activating polypeptide receptor; pituitary adenylate cyclase-activating polypeptide type I receptor; pituitary adenylate cyclase-activating polypeptide type IA receptor; rat pituitary adenylate cyclase activating polypeptide 1 receptor (1)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2484,593,558 - 84,642,700 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl484,593,892 - 84,642,700 (+)Ensembl
Rnor_6.0485,662,809 - 85,711,696 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl485,662,892 - 85,711,696 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04150,314,846 - 150,363,650 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4484,209,729 - 84,254,982 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1484,478,820 - 84,501,994 (+)NCBI
Celera479,461,538 - 79,510,340 (+)NCBICelera
Cytogenetic Map4q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
1. Abu-Hamdan MD, etal., Neuroscience. 2006 Jun 19;140(1):147-61. Epub 2006 Apr 19.
2. Apostolakis EM, etal., Mol Endocrinol. 2005 Nov;19(11):2798-811. Epub 2005 Jun 23.
3. Chatterjee TK, etal., J Biol Chem. 1996 Dec 13;271(50):32226-32.
4. Drescher MJ, etal., Neuroscience. 2006 Sep 29;142(1):139-64. Epub 2006 Jul 31.
5. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
6. Girard BM, etal., J Mol Neurosci. 2008 Nov;36(1-3):310-20. Epub 2008 Jun 19.
7. GOA data from the GO Consortium
8. Hammack SE, etal., Psychoneuroendocrinology. 2009 Jul;34(6):833-43. Epub 2009 Jan 31.
9. Koh PO and Won CK, J Vet Med Sci. 2006 Jun;68(6):537-41.
10. Kojro E, etal., FASEB J. 2006 Mar;20(3):512-4. Epub 2006 Jan 9.
11. McCaffrey G, etal., Traffic. 2009 Jul;10(7):938-50. Epub 2009 Mar 5.
12. McCulloch DA, etal., Mol Pharmacol. 2001 Jun;59(6):1523-32.
13. MGD data from the GO Consortium
14. Miampamba M, etal., Regul Pept 2002 May 30;105(3):145-54.
15. NCBI rat LocusLink and RefSeq merged data July 26, 2002
16. Nicot A, etal., J Neurosci 2002 Nov 1;22(21):9244-54.
17. Oh DS, etal., J Mol Neurosci. 2005;26(1):85-97.
18. Pilzer I and Gozes I, Peptides. 2006 Nov;27(11):2867-76. Epub 2006 Aug 14.
19. Pisegna JR and Wank SA, Proc Natl Acad Sci U S A 1993 Jul 1;90(13):6345-9.
20. Reichenstein M, etal., J Mol Neurosci. 2008 Nov;36(1-3):330-8. Epub 2008 Jul 1.
21. RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
22. RGD automated import pipeline for gene-chemical interactions
23. Riek-Burchardt M, etal., Neuropharmacology. 2010 Jan;58(1):199-207. Epub 2009 Jul 30.
24. Seki T, etal., Neurosci Lett. 1997 Dec 5;238(3):127-30.
25. Shi GX, etal., Mol Cell Biol. 2008 Aug;28(16):4940-51. Epub 2008 Jun 9.
26. Spengler D, etal., Nature 1993 Sep 9;365(6442):170-5.
27. Tominaga A, etal., J Mol Neurosci. 2008 Nov;36(1-3):73-8. Epub 2008 Jul 15.
28. Vaccari S, etal., J Endocrinol. 2006 Oct;191(1):287-99.
29. Zhang W, etal., J Neurochem. 2007 Nov;103(3):1157-67. Epub 2007 Aug 6.
Additional References at PubMed
PMID:7687425   PMID:8394723   PMID:8394834   PMID:8396930   PMID:9115282   PMID:11784714   PMID:15344914   PMID:16888209   PMID:16888214   PMID:16888229   PMID:17213203   PMID:18337184  
PMID:18353507   PMID:20093365   PMID:20599818   PMID:21539889   PMID:21620115   PMID:21693142   PMID:22715380   PMID:22766684   PMID:22886412   PMID:23080176   PMID:23382219   PMID:23690336  
PMID:23801193   PMID:24352804   PMID:24508136   PMID:27181029   PMID:32142016   PMID:32186931  


Genomics

Comparative Map Data
Adcyap1r1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2484,593,558 - 84,642,700 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl484,593,892 - 84,642,700 (+)Ensembl
Rnor_6.0485,662,809 - 85,711,696 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl485,662,892 - 85,711,696 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04150,314,846 - 150,363,650 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4484,209,729 - 84,254,982 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1484,478,820 - 84,501,994 (+)NCBI
Celera479,461,538 - 79,510,340 (+)NCBICelera
Cytogenetic Map4q24NCBI
ADCYAP1R1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl731,052,308 - 31,111,479 (+)EnsemblGRCh38hg38GRCh38
GRCh38731,052,308 - 31,111,474 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37731,091,923 - 31,151,088 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36731,058,667 - 31,112,836 (+)NCBINCBI36hg18NCBI36
Build 34730,865,381 - 30,919,551NCBI
Celera731,081,020 - 31,135,194 (+)NCBI
Cytogenetic Map7p14.3NCBI
HuRef730,974,048 - 31,033,016 (+)NCBIHuRef
CHM1_1731,091,676 - 31,150,684 (+)NCBICHM1_1
CRA_TCAGchr7v2731,141,254 - 31,200,271 (+)NCBI
Adcyap1r1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39655,428,486 - 55,478,440 (+)NCBIGRCm39mm39
GRCm39 Ensembl655,428,963 - 55,478,436 (+)Ensembl
GRCm38655,451,501 - 55,501,455 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl655,451,978 - 55,501,451 (+)EnsemblGRCm38mm10GRCm38
MGSCv37655,401,974 - 55,451,449 (+)NCBIGRCm37mm9NCBIm37
MGSCv36655,381,558 - 55,431,033 (+)NCBImm8
Celera655,983,712 - 56,033,208 (+)NCBICelera
Cytogenetic Map6B3NCBI
Adcyap1r1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541032,176,536 - 32,229,431 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541032,176,683 - 32,229,187 (+)NCBIChiLan1.0ChiLan1.0
ADCYAP1R1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1731,716,396 - 31,843,381 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl731,784,622 - 31,843,381 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0731,597,251 - 31,724,299 (+)NCBIMhudiblu_PPA_v0panPan3
ADCYAP1R1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11443,707,683 - 43,761,166 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1443,701,745 - 43,756,571 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1443,134,310 - 43,193,229 (+)NCBI
ROS_Cfam_1.01443,642,714 - 43,701,564 (+)NCBI
UMICH_Zoey_3.11443,776,867 - 43,827,123 (+)NCBI
UNSW_CanFamBas_1.01443,435,411 - 43,493,816 (+)NCBI
UU_Cfam_GSD_1.01443,796,177 - 43,855,281 (+)NCBI
Adcyap1r1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511888,066,317 - 88,111,238 (+)NCBI
SpeTri2.0NW_0049364787,278,081 - 7,322,970 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ADCYAP1R1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1841,917,402 - 41,972,301 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11841,915,180 - 41,972,327 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ADCYAP1R1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12127,274,039 - 27,333,316 (-)NCBI
ChlSab1.1 Ensembl2127,278,788 - 27,333,220 (-)Ensembl
Vero_WHO_p1.0NW_02366604277,371,163 - 77,431,527 (+)NCBI
Adcyap1r1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624783271,179 - 323,785 (+)NCBI

Position Markers
AI846590  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2484,642,503 - 84,642,624 (+)MAPPERmRatBN7.2
Rnor_6.0485,711,500 - 85,711,620NCBIRnor6.0
Rnor_5.04150,363,454 - 150,363,574UniSTSRnor5.0
RGSC_v3.4484,258,337 - 84,258,457UniSTSRGSC3.4
Celera479,510,144 - 79,510,264UniSTS
Cytogenetic Map4q24UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41081417091360527Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)432583980114627242Rat
8655961Kidm43Kidney mass QTL 4318kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)436303261103194984Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
1300139Hrtrt6Heart rate QTL 62.85heart pumping trait (VT:2000009)heart rate (CMO:0000002)439524264116179656Rat
61445Strs3Sensitivity to stroke QTL 33cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)44043338885433388Rat
8694439Bw168Body weight QTL 1689.570.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)44043341485433414Rat
6893678Bw108Body weight QTL 1082.60.006body mass (VT:0001259)body weight (CMO:0000012)44345797688457976Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)444463720155883716Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)444463908148090542Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)444463908148090542Rat
2312567Glom19Glomerulus QTL 191.90.006kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)445456990146803430Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)450119848146803430Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)456647873149491524Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)456698790126192555Rat
631546Bp86Blood pressure QTL 863.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)45711443291360801Rat
634311Sach7Saccharin preference QTL 7taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)457114432102114432Rat
1358363Sradr3Stress Responsive Adrenal Weight QTL 36.19adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)457486946102486946Rat
1558651Swd3Spike wave discharge measurement QTL 34.620.000024brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)45843213392991462Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)459948935154902892Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
1578657Bss12Bone structure and strength QTL 128.9femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)460220938105220938Rat
1578658Bss13Bone structure and strength QTL 138femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)460220938105220938Rat
2300179Bmd50Bone mineral density QTL 505.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)460928534105928534Rat
1549843Bw53Body weight QTL 530.0001body mass (VT:0001259)body weight gain (CMO:0000420)461697658103194791Rat
1549839Bw52Body weight QTL 520.0001body mass (VT:0001259)body weight gain (CMO:0000420)461697658115089733Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)462277855128289560Rat
6478743Anxrr40Anxiety related response QTL 400.83076defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)462753847107753847Rat
6478772Anxrr49Anxiety related response QTL 490.15488defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)462753847107753847Rat
6478684Anxrr30Anxiety related response QTL 300.00087defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)462753847107753847Rat
631651Bp124Blood pressure QTL 1243arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)462879517107879517Rat
7394826Bw126Body weight QTL 1260.002body mass (VT:0001259)body weight gain (CMO:0000420)46293326987483707Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)absolute change in pulse pressure (CMO:0001882)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)percent change in systolic blood pressure (CMO:0000747)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)percent change in mean arterial blood pressure (CMO:0002035)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)462933508114921294Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)464528739157573521Rat
2312569Pur19Proteinuria QTL 193.40.001total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)46588210796130297Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)470362013132642728Rat
634344Hcar7Hepatocarcinoma resistance QTL 77.8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)470808386115808386Rat
634344Hcar7Hepatocarcinoma resistance QTL 77.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)470808386115808386Rat
631646Stl4Serum triglyceride level QTL 46.50.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)473169846132642728Rat
724522Bp146Blood pressure QTL 1462.20.0021arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)473630210118630210Rat
2302051Pia28Pristane induced arthritis QTL 285.30.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)473630210118630210Rat
70167Bw22Body weight QTL 223.1body mass (VT:0001259)body weight (CMO:0000012)476647384117676292Rat
1357342Bw40Body weight QTL 400.001body mass (VT:0001259)body weight (CMO:0000012)476647384117676292Rat
631662Hcar2Hepatocarcinoma resistance QTL 23.10.0003liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)478878504123878504Rat
631556Bp135Blood pressure QTL 1350.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)478881294117676292Rat
61364Iddm2Insulin dependent diabetes mellitus QTL 2blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)478885890102684881Rat
738015Pia9Pristane induced arthritis QTL 94.50.048joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)480694870125694870Rat
2306899Bp338Blood pressure QTL 3380.071arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)481006124120102625Rat
1641919Alc22Alcohol consumption QTL 220.0005drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)481192555126192555Rat
70177Xhs1X-ray hypersensitivity QTL 125.1intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)482798864152731274Rat
2306794Ean2Experimental allergic neuritis QTL 26.4nervous system integrity trait (VT:0010566)IFNG-secreting splenocyte count (CMO:0002122)48342841995853334Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)483428419177635233Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1069
Count of miRNA genes:194
Interacting mature miRNAs:227
Transcripts:ENSRNOT00000016175, ENSRNOT00000035722, ENSRNOT00000043851, ENSRNOT00000046192
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 68 2
Low 3 43 45 29 8 29 8 9 6 29 32 11 8
Below cutoff 12 12 10 12 2 6 7

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001270579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001270580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001270581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001270582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001270583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_133511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC091657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR475040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D14908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D14909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D16465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L16506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L16680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U82669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U84740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U84741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U84742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U84743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z22735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z23272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z23273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z23274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z23275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z23279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z23282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000016175   ⟹   ENSRNOP00000016175
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl484,593,892 - 84,642,700 (+)Ensembl
Rnor_6.0 Ensembl485,662,892 - 85,711,696 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000035722   ⟹   ENSRNOP00000030759
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl484,593,892 - 84,642,700 (+)Ensembl
Rnor_6.0 Ensembl485,662,892 - 85,711,696 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000043851   ⟹   ENSRNOP00000044267
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl484,593,892 - 84,642,700 (+)Ensembl
Rnor_6.0 Ensembl485,662,892 - 85,711,696 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000046192   ⟹   ENSRNOP00000050048
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl484,593,892 - 84,642,700 (+)Ensembl
Rnor_6.0 Ensembl485,662,892 - 85,711,696 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000103561   ⟹   ENSRNOP00000082399
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl484,602,868 - 84,642,700 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000112901   ⟹   ENSRNOP00000090556
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl484,593,892 - 84,642,700 (+)Ensembl
RefSeq Acc Id: NM_001270579   ⟹   NP_001257508
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2484,593,892 - 84,642,700 (+)NCBI
Rnor_6.0485,662,892 - 85,711,696 (+)NCBI
Rnor_5.04150,314,846 - 150,363,650 (+)NCBI
Celera479,461,538 - 79,510,340 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001270580   ⟹   NP_001257509
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2484,593,892 - 84,642,700 (+)NCBI
Rnor_6.0485,662,892 - 85,711,696 (+)NCBI
Rnor_5.04150,314,846 - 150,363,650 (+)NCBI
Celera479,461,538 - 79,510,340 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001270581   ⟹   NP_001257510
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2484,593,892 - 84,642,700 (+)NCBI
Rnor_6.0485,662,892 - 85,711,696 (+)NCBI
Rnor_5.04150,314,846 - 150,363,650 (+)NCBI
Celera479,461,538 - 79,510,340 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001270582   ⟹   NP_001257511
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2484,593,892 - 84,642,700 (+)NCBI
Rnor_6.0485,662,892 - 85,711,696 (+)NCBI
Rnor_5.04150,314,846 - 150,363,650 (+)NCBI
Celera479,461,538 - 79,510,340 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001270583   ⟹   NP_001257512
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2484,593,892 - 84,642,700 (+)NCBI
Rnor_6.0485,662,892 - 85,711,696 (+)NCBI
Rnor_5.04150,314,846 - 150,363,650 (+)NCBI
Celera479,461,538 - 79,510,340 (+)NCBI
Sequence:
RefSeq Acc Id: NM_133511   ⟹   NP_598195
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2484,593,892 - 84,642,700 (+)NCBI
Rnor_6.0485,662,892 - 85,711,696 (+)NCBI
Rnor_5.04150,314,846 - 150,363,650 (+)NCBI
RGSC_v3.4484,209,729 - 84,254,982 (+)RGD
Celera479,461,538 - 79,510,340 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039106996   ⟹   XP_038962924
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2484,593,817 - 84,642,700 (+)NCBI
RefSeq Acc Id: XM_039106997   ⟹   XP_038962925
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2484,593,817 - 84,642,700 (+)NCBI
RefSeq Acc Id: XM_039106998   ⟹   XP_038962926
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2484,593,817 - 84,642,700 (+)NCBI
RefSeq Acc Id: XM_039106999   ⟹   XP_038962927
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2484,593,816 - 84,642,700 (+)NCBI
RefSeq Acc Id: XM_039107000   ⟹   XP_038962928
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2484,593,823 - 84,642,700 (+)NCBI
RefSeq Acc Id: XM_039107001   ⟹   XP_038962929
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2484,593,819 - 84,642,700 (+)NCBI
RefSeq Acc Id: XM_039107002   ⟹   XP_038962930
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2484,597,268 - 84,639,173 (+)NCBI
RefSeq Acc Id: XM_039107003   ⟹   XP_038962931
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2484,593,558 - 84,630,518 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001257508 (Get FASTA)   NCBI Sequence Viewer  
  NP_001257509 (Get FASTA)   NCBI Sequence Viewer  
  NP_001257510 (Get FASTA)   NCBI Sequence Viewer  
  NP_001257511 (Get FASTA)   NCBI Sequence Viewer  
  NP_001257512 (Get FASTA)   NCBI Sequence Viewer  
  NP_598195 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962924 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962925 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962926 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962927 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962928 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962929 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962930 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962931 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA02990 (Get FASTA)   NCBI Sequence Viewer  
  AAA41792 (Get FASTA)   NCBI Sequence Viewer  
  AAG16771 (Get FASTA)   NCBI Sequence Viewer  
  BAA03608 (Get FASTA)   NCBI Sequence Viewer  
  BAA03609 (Get FASTA)   NCBI Sequence Viewer  
  BAA03932 (Get FASTA)   NCBI Sequence Viewer  
  CAA80429 (Get FASTA)   NCBI Sequence Viewer  
  CAA80810 (Get FASTA)   NCBI Sequence Viewer  
  CAA80811 (Get FASTA)   NCBI Sequence Viewer  
  CAA80812 (Get FASTA)   NCBI Sequence Viewer  
  CAA80813 (Get FASTA)   NCBI Sequence Viewer  
  CAA80817 (Get FASTA)   NCBI Sequence Viewer  
  CAA80820 (Get FASTA)   NCBI Sequence Viewer  
  CAA80821 (Get FASTA)   NCBI Sequence Viewer  
  EDL88073 (Get FASTA)   NCBI Sequence Viewer  
  EDL88074 (Get FASTA)   NCBI Sequence Viewer  
  EDL88075 (Get FASTA)   NCBI Sequence Viewer  
  EDL88076 (Get FASTA)   NCBI Sequence Viewer  
  EDL88077 (Get FASTA)   NCBI Sequence Viewer  
  EDL88078 (Get FASTA)   NCBI Sequence Viewer  
  EDL88079 (Get FASTA)   NCBI Sequence Viewer  
  EDL88080 (Get FASTA)   NCBI Sequence Viewer  
  EDL88081 (Get FASTA)   NCBI Sequence Viewer  
  EDL88082 (Get FASTA)   NCBI Sequence Viewer  
  EDL88083 (Get FASTA)   NCBI Sequence Viewer  
  EDL88084 (Get FASTA)   NCBI Sequence Viewer  
  P32215 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_598195   ⟸   NM_133511
- Peptide Label: isoform b precursor
- UniProtKB: P32215 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001257510   ⟸   NM_001270581
- Peptide Label: isoform d precursor
- UniProtKB: P32215 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001257508   ⟸   NM_001270579
- Peptide Label: isoform a precursor
- UniProtKB: P32215 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001257509   ⟸   NM_001270580
- Peptide Label: isoform c precursor
- UniProtKB: P32215 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001257512   ⟸   NM_001270583
- Peptide Label: isoform e precursor
- UniProtKB: P32215 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001257511   ⟸   NM_001270582
- Peptide Label: isoform d precursor
- UniProtKB: P32215 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000016175   ⟸   ENSRNOT00000016175
RefSeq Acc Id: ENSRNOP00000044267   ⟸   ENSRNOT00000043851
RefSeq Acc Id: ENSRNOP00000030759   ⟸   ENSRNOT00000035722
RefSeq Acc Id: ENSRNOP00000050048   ⟸   ENSRNOT00000046192
RefSeq Acc Id: XP_038962931   ⟸   XM_039107003
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038962927   ⟸   XM_039106999
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038962926   ⟸   XM_039106998
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038962925   ⟸   XM_039106997
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038962924   ⟸   XM_039106996
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038962929   ⟸   XM_039107001
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038962928   ⟸   XM_039107000
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038962930   ⟸   XM_039107002
- Peptide Label: isoform X5
RefSeq Acc Id: ENSRNOP00000090556   ⟸   ENSRNOT00000112901
RefSeq Acc Id: ENSRNOP00000082399   ⟸   ENSRNOT00000103561

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693075
Promoter ID:EPDNEW_R3599
Type:single initiation site
Name:Adcyap1r1_1
Description:ADCYAP receptor type 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0485,662,821 - 85,662,881EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN-Lx/CubMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BUF/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
DA/OlaHsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
F344/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FXLE16/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/FarMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
HXB10/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEXF10A/StmMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
M520/NRrrcMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MWF/Hsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/OlalpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/RijCrl (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2038 AgrOrtholog
Ensembl Genes ENSRNOG00000012098 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSRNOP00000016175 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000030759 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000044267 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000050048 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000016175 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000035722 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000043851 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000046192 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 4.10.1240.10 UniProtKB/Swiss-Prot
InterPro GPCR_2-like UniProtKB/Swiss-Prot
  GPCR_2_extracell_dom_sf UniProtKB/Swiss-Prot
  GPCR_2_extracellular_dom UniProtKB/Swiss-Prot
  GPCR_2_PACAP_1_rcpt UniProtKB/Swiss-Prot
  GPCR_2_secretin-like UniProtKB/Swiss-Prot
  GPCR_2_secretin-like_CS UniProtKB/Swiss-Prot
KEGG Report rno:24167 UniProtKB/Swiss-Prot
NCBI Gene 24167 ENTREZGENE
Pfam 7tm_2 UniProtKB/Swiss-Prot
  HRM UniProtKB/Swiss-Prot
PhenoGen Adcyap1r1 PhenoGen
PRINTS GPCRSECRETIN UniProtKB/Swiss-Prot
  PACAPRECEPTR UniProtKB/Swiss-Prot
PROSITE G_PROTEIN_RECEP_F2_1 UniProtKB/Swiss-Prot
  G_PROTEIN_RECEP_F2_2 UniProtKB/Swiss-Prot
  G_PROTEIN_RECEP_F2_3 UniProtKB/Swiss-Prot
  G_PROTEIN_RECEP_F2_4 UniProtKB/Swiss-Prot
SMART HormR UniProtKB/Swiss-Prot
Superfamily-SCOP SSF111418 UniProtKB/Swiss-Prot
UniProt P32215 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q63414 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-03-25 Adcyap1r1  ADCYAP receptor type I  Adcyap1r1  ADCYAP receptor type 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2017-03-02 Adcyap1r1  ADCYAP receptor type 1  Adcyap1r1  adenylate cyclase activating polypeptide 1 receptor type 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-02-25 Adcyap1r1  adenylate cyclase activating polypeptide 1 receptor type 1  Adcyap1r1  adenylate cyclase activating polypeptide 1 receptor 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-05-28 Adcyap1r1  adenylate cyclase activating polypeptide 1 receptor 1  Adcyap1r1  adenylate cyclase activating polypeptide 1 (pituitary) receptor type I  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-18 Adcyap1r1  adenylate cyclase activating polypeptide 1 (pituitary) receptor type I  Adcyap1r1  adenylate cyclase activating polypeptide 1 receptor 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-05-15 Adcyap1r1  adenylate cyclase activating polypeptide 1 receptor 1  Adcyap1r-1  adenylate cyclase activating polypeptide 1 type 1 receptor  Symbol and Name updated 1299863 APPROVED
2001-06-29 Adcyap1r1  adenylate cyclase activating polypeptide 1 receptor 1      Name updated to reflect Human and Mouse nomenclature 67952 APPROVED
2001-06-29 Adcyap1r1  adenylate cyclase activating polypeptide 1 receptor 1      Name withdrawn 67952 WITHDRAWN
2001-06-18 Adcyap1r1  adenylate cyclase activating polypeptide 1 receptor 1      Name updated to reflect Human and Mouse nomenclature 67952 APPROVED
2001-06-18 Adcyap1r1  Rat pituitary adenylate cyclase activating polypeptide 1 receptor (1)      Name withdrawn 67952 WITHDRAWN

RGD Curation Notes
Note Type Note Reference
gene_disease a therapeutic target in childhood medulloblastoma (a granule cell malignancy caused by abnormal Shh-signaling) 628387
gene_domains contains seven transmembrane domains characteristic of G-protein coupled receptors 631731
gene_expression expressed in the hypothalamus, brain stem, adrenal gland, testis, and pituitary 631732
gene_expression mRNA expressed in the developing cerebellum 628387
gene_function high-affinity receptor for pituitary adenylyl cyclase-activating polypeptide 631731
gene_process involved in adenylyl cyclase and phospholipase C mediated signaling 631732
gene_process regulates neuropeptide signaling 631731
gene_process regulates neural precursor proliferation 628387
gene_process participates in inhibitory signaling for Shh-induced proliferation in the developing cerebellum 628387
gene_transcript has four splice variants with insertions within the third intracellular loop 631732