Neurod6 (neuronal differentiation 6) - Rat Genome Database

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Gene: Neurod6 (neuronal differentiation 6) Rattus norvegicus
Analyze
Symbol: Neurod6
Name: neuronal differentiation 6
RGD ID: 1562793
Description: Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and E-box binding activity. Predicted to be involved in axon development; positive regulation of transcription by RNA polymerase II; and sensory organ development. Predicted to act upstream of or within dentate gyrus development. Predicted to be active in nucleus. Orthologous to human NEUROD6 (neuronal differentiation 6); INTERACTS WITH 4,4'-sulfonyldiphenol; 6-propyl-2-thiouracil; benzo[a]pyrene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC500137; neurogenic differentiation 6; neurogenic differentiation factor 6; RGD1562793; similar to NEX-1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8486,176,909 - 86,180,155 (-)NCBIGRCr8
mRatBN7.2484,846,659 - 84,849,905 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl484,846,231 - 84,849,999 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx490,071,795 - 90,075,041 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0485,847,196 - 85,850,442 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0484,252,523 - 84,255,768 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0485,911,861 - 85,915,107 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl485,911,861 - 85,915,099 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04150,564,266 - 150,567,512 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4484,476,070 - 84,479,316 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera479,712,924 - 79,716,170 (-)NCBICelera
Cytogenetic Map4q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10804213   PMID:12477932   PMID:12562512   PMID:15659228   PMID:19610105   PMID:20517466  


Genomics

Comparative Map Data
Neurod6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8486,176,909 - 86,180,155 (-)NCBIGRCr8
mRatBN7.2484,846,659 - 84,849,905 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl484,846,231 - 84,849,999 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx490,071,795 - 90,075,041 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0485,847,196 - 85,850,442 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0484,252,523 - 84,255,768 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0485,911,861 - 85,915,107 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl485,911,861 - 85,915,099 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04150,564,266 - 150,567,512 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4484,476,070 - 84,479,316 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera479,712,924 - 79,716,170 (-)NCBICelera
Cytogenetic Map4q24NCBI
NEUROD6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38731,337,465 - 31,340,726 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl731,337,465 - 31,340,726 (-)EnsemblGRCh38hg38GRCh38
GRCh37731,377,079 - 31,380,340 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36731,343,604 - 31,347,063 (-)NCBINCBI36Build 36hg18NCBI36
Build 34731,150,319 - 31,153,778NCBI
Celera731,365,996 - 31,369,454 (-)NCBICelera
Cytogenetic Map7p14.3NCBI
HuRef731,259,879 - 31,263,342 (-)NCBIHuRef
CHM1_1731,376,632 - 31,380,087 (-)NCBICHM1_1
T2T-CHM13v2.0731,475,149 - 31,478,410 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2731,426,277 - 31,429,739 (-)NCBI
Neurod6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39655,654,803 - 55,658,248 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl655,654,807 - 55,658,248 (-)EnsemblGRCm39 Ensembl
GRCm38655,677,818 - 55,681,263 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl655,677,822 - 55,681,263 (-)EnsemblGRCm38mm10GRCm38
MGSCv37655,627,812 - 55,631,257 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36655,607,401 - 55,610,647 (-)NCBIMGSCv36mm8
Celera656,208,451 - 56,211,896 (-)NCBICelera
Cytogenetic Map6B3NCBI
cM Map627.53NCBI
Neurod6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541032,408,052 - 32,411,273 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541032,408,052 - 32,411,273 (-)NCBIChiLan1.0ChiLan1.0
NEUROD6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2636,147,861 - 36,151,257 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1784,472,592 - 84,475,988 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0731,949,900 - 31,953,353 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1732,068,515 - 32,071,974 (-)NCBIpanpan1.1PanPan1.1panPan2
NEUROD6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11443,913,351 - 43,916,818 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1443,914,149 - 43,915,162 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1443,346,323 - 43,349,875 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01443,855,211 - 43,858,777 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1443,854,682 - 43,858,140 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11443,980,567 - 43,984,107 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01443,647,051 - 43,650,594 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01444,009,200 - 44,012,762 (-)NCBIUU_Cfam_GSD_1.0
Neurod6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511888,313,184 - 88,316,659 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364787,524,912 - 7,528,395 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364787,524,912 - 7,528,395 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NEUROD6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1841,760,546 - 41,763,833 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11841,757,356 - 41,763,837 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
NEUROD6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12127,042,482 - 27,049,611 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2127,047,809 - 27,048,822 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604277,659,389 - 77,663,069 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Neurod6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624783534,295 - 537,166 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624783533,727 - 537,180 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Neurod6
6 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:293
Count of miRNA genes:181
Interacting mature miRNAs:227
Transcripts:ENSRNOT00000016182
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
1549843Bw53Body weight QTL 530.0001body mass (VT:0001259)body weight gain (CMO:0000420)461697658103194791Rat
61445Strs3Sensitivity to stroke QTL 33cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)44043338885433388Rat
6893678Bw108Body weight QTL 1082.60.006body mass (VT:0001259)body weight (CMO:0000012)44345797688457976Rat
1357342Bw40Body weight QTL 400.001body mass (VT:0001259)body weight (CMO:0000012)476647384117676292Rat
631556Bp135Blood pressure QTL 1350.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)478881294117676292Rat
1358363Sradr3Stress Responsive Adrenal Weight QTL 36.19adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)457486946102486946Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)470362013132642728Rat
70167Bw22Body weight QTL 223.1body mass (VT:0001259)body weight (CMO:0000012)476647384117676292Rat
1549839Bw52Body weight QTL 520.0001body mass (VT:0001259)body weight gain (CMO:0000420)461697658115089733Rat
70177Xhs1X-ray hypersensitivity QTL 125.1intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)482798864152731274Rat
724522Bp146Blood pressure QTL 1462.20.0021arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)473630210118630210Rat
8694439Bw168Body weight QTL 1689.570.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)44043341485433414Rat
1641919Alc22Alcohol consumption QTL 220.0005drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)481192555126192555Rat
2300179Bmd50Bone mineral density QTL 505.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)460928534105928534Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)444463908148090542Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)462933508114921294Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)450119848146803430Rat
61364Iddm2Insulin dependent diabetes mellitus QTL 2blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)478885890102684881Rat
1300139Hrtrt6Heart rate QTL 62.85heart pumping trait (VT:2000009)heart rate (CMO:0000002)439524264116179656Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)456647873149491524Rat
1578657Bss12Bone structure and strength QTL 128.9femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)460220938105220938Rat
1578658Bss13Bone structure and strength QTL 138femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)460220938105220938Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
6478684Anxrr30Anxiety related response QTL 300.00087defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)462753847107753847Rat
2302051Pia28Pristane induced arthritis QTL 285.30.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)473630210118630210Rat
2306794Ean2Experimental allergic neuritis QTL 26.4nervous system integrity trait (VT:0010566)IFNG-secreting splenocyte count (CMO:0002122)48342841995853334Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)459948935154902892Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41081417091360527Rat
738015Pia9Pristane induced arthritis QTL 94.50.048joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)480694870125694870Rat
2312567Glom19Glomerulus QTL 191.90.006kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)445456990146803430Rat
6478772Anxrr49Anxiety related response QTL 490.15488defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)462753847107753847Rat
631646Stl4Serum triglyceride level QTL 46.50.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)473169846132642728Rat
634334Xhs3X-ray hypersensitivity QTL 310intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)484728680129854654Rat
2312569Pur19Proteinuria QTL 193.40.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)46588210796130297Rat
8655961Kidm43Kidney mass QTL 4318kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)436303261103194984Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)444463908148090542Rat
634344Hcar7Hepatocarcinoma resistance QTL 77.8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)470808386115808386Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)483428419177635233Rat
631662Hcar2Hepatocarcinoma resistance QTL 23.10.0003liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)478878504123878504Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)444463720155883716Rat
631651Bp124Blood pressure QTL 1243arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)462879517107879517Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)462277855128289560Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
1558651Swd3Spike wave discharge measurement QTL 34.620.000024brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)45843213392991462Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)456698790126192555Rat
2306899Bp338Blood pressure QTL 3380.071arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)481006124120102625Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)464528739157573521Rat
631546Bp86Blood pressure QTL 863.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)45711443291360801Rat
6478743Anxrr40Anxiety related response QTL 400.83076defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)462753847107753847Rat
7394826Bw126Body weight QTL 1260.002body mass (VT:0001259)body weight gain (CMO:0000420)46293326987483707Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)432583980114627242Rat

Markers in Region
D44480  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2484,847,242 - 84,847,383 (+)MAPPERmRatBN7.2
Rnor_6.0485,912,445 - 85,912,585NCBIRnor6.0
Rnor_5.04150,564,850 - 150,564,990UniSTSRnor5.0
RGSC_v3.4484,476,654 - 84,476,794UniSTSRGSC3.4
Celera479,713,508 - 79,713,648UniSTS
Cytogenetic Map4q24UniSTS
BF386980  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2484,847,352 - 84,847,506 (+)MAPPERmRatBN7.2
Rnor_6.0485,912,555 - 85,912,708NCBIRnor6.0
Rnor_5.04150,564,960 - 150,565,113UniSTSRnor5.0
RGSC_v3.4484,476,764 - 84,476,917UniSTSRGSC3.4
Celera479,713,618 - 79,713,771UniSTS
RH 3.4 Map4526.11UniSTS
Cytogenetic Map4q24UniSTS
PMC57740P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2484,847,505 - 84,847,750 (+)MAPPERmRatBN7.2
Rnor_6.0485,912,708 - 85,912,952NCBIRnor6.0
Rnor_5.04150,565,113 - 150,565,357UniSTSRnor5.0
RGSC_v3.4484,476,917 - 84,477,161UniSTSRGSC3.4
Celera479,713,771 - 79,714,015UniSTS
Cytogenetic Map4q24UniSTS
NEUROD6  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2484,847,358 - 84,847,795 (+)MAPPERmRatBN7.2
Rnor_6.0485,912,561 - 85,912,997NCBIRnor6.0
Rnor_5.04150,564,966 - 150,565,402UniSTSRnor5.0
RGSC_v3.4484,476,770 - 84,477,206UniSTSRGSC3.4
Celera479,713,624 - 79,714,060UniSTS
Cytogenetic Map4q24UniSTS
Neurod6  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2484,847,441 - 84,848,455 (+)MAPPERmRatBN7.2
Rnor_6.0485,912,644 - 85,913,657NCBIRnor6.0
Rnor_5.04150,565,049 - 150,566,062UniSTSRnor5.0
RGSC_v3.4484,476,853 - 84,477,866UniSTSRGSC3.4
Celera479,713,707 - 79,714,720UniSTS
Cytogenetic Map4q24UniSTS
Neurod6  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2484,848,336 - 84,848,452 (+)MAPPERmRatBN7.2
Rnor_6.0485,913,539 - 85,913,654NCBIRnor6.0
Rnor_5.04150,565,944 - 150,566,059UniSTSRnor5.0
Celera479,714,602 - 79,714,717UniSTS
Cytogenetic Map4q24UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
8 3 2 92 18 19 9 5 9 2 40 11 86 9 33 10

Sequence


Ensembl Acc Id: ENSRNOT00000016182   ⟹   ENSRNOP00000016182
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl484,846,231 - 84,849,999 (-)Ensembl
Rnor_6.0 Ensembl485,911,861 - 85,915,099 (-)Ensembl
RefSeq Acc Id: NM_001109237   ⟹   NP_001102707
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8486,176,909 - 86,180,155 (-)NCBI
mRatBN7.2484,846,659 - 84,849,905 (-)NCBI
Rnor_6.0485,911,861 - 85,915,107 (-)NCBI
Rnor_5.04150,564,266 - 150,567,512 (-)NCBI
RGSC_v3.4484,476,070 - 84,479,316 (-)RGD
Celera479,712,924 - 79,716,170 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001102707 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI68855 (Get FASTA)   NCBI Sequence Viewer  
  EDL88072 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000016182.2
RefSeq Acc Id: NP_001102707   ⟸   NM_001109237
- UniProtKB: B5DEY7 (UniProtKB/TrEMBL),   A6K0Z6 (UniProtKB/TrEMBL),   F7FIW6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000016182   ⟸   ENSRNOT00000016182
Protein Domains
bHLH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B5DEY7-F1-model_v2 AlphaFold B5DEY7 1-337 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693076
Promoter ID:EPDNEW_R3600
Type:single initiation site
Name:Neurod6_1
Description:neuronal differentiation 6
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0485,915,106 - 85,915,166EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562793 AgrOrtholog
BioCyc Gene G2FUF-44726 BioCyc
Ensembl Genes ENSRNOG00000026055 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000016182.6 UniProtKB/TrEMBL
Gene3D-CATH 4.10.280.10 UniProtKB/TrEMBL
InterPro bHLH_transcription_factors UniProtKB/TrEMBL
  HLH_DNA-bd_sf UniProtKB/TrEMBL
  HLH_DNA_bd UniProtKB/TrEMBL
  Neurogenic_DUF UniProtKB/TrEMBL
  TF_bHLH_NeuroD UniProtKB/TrEMBL
KEGG Report rno:500137 UniProtKB/TrEMBL
NCBI Gene 500137 ENTREZGENE
PANTHER BASIC HELIX-LOOP-HELIX PROTEIN NEUROGENIN-RELATED UniProtKB/TrEMBL
  PTHR19290:SF9 UniProtKB/TrEMBL
Pfam HLH UniProtKB/TrEMBL
  Neuro_bHLH UniProtKB/TrEMBL
PhenoGen Neurod6 PhenoGen
PIRSF bHLH_NeuroD UniProtKB/TrEMBL
PROSITE HLH UniProtKB/TrEMBL
RatGTEx ENSRNOG00000026055 RatGTEx
SMART HLH UniProtKB/TrEMBL
Superfamily-SCOP HLH_basic UniProtKB/TrEMBL
UniProt A6K0Z6 ENTREZGENE, UniProtKB/TrEMBL
  B5DEY7 ENTREZGENE
  F7FIW6 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary B5DEY7 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-10-05 Neurod6  neuronal differentiation 6  Neurod6  neurogenic differentiation 6  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-29 Neurod6  neurogenic differentiation 6  RGD1562793_predicted  similar to NEX-1 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1562793_predicted  similar to NEX-1 (predicted)  LOC500137  similar to NEX-1  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC500137  similar to NEX-1      Symbol and Name status set to provisional 70820 PROVISIONAL