Hoxa5 (homeo box A5) - Rat Genome Database

Name: Hoxa5
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Hoxa5 (homeo box A5) Rattus norvegicus

Analyze

Symbol:

Hoxa5

Name:

homeo box A5

RGD ID:

620609

Description:

ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN anterior/posterior pattern specification (ortholog); bronchiole development (ortholog); cartilage morphogenesis (ortholog); ASSOCIATED WITH Diaphragmatic Hernia (ortholog); head and neck squamous cell carcinoma (ortholog); Mouth Neoplasms (ortholog); FOUND IN nucleus (ortholog); INTERACTS WITH all-trans-retinoic acid; ammonium chloride; diethylstilbestrol

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

homeobox protein Hox-1.3; homeobox protein Hox-A5; homeobox protein Hox-A5-like; hox-1.3; LOC100909641; LOC100911546

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	HOXA5 (homeobox A5)	HGNC	HomoloGene, Panther
Mus musculus (house mouse):	Hoxa5 (homeobox A5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Hoxa5 (homeobox A5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	HOXA5 (homeobox A5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	HOXA5 (homeobox A5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Hoxa5 (homeobox A5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	HOXA5 (homeobox A5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	HOXA5 (homeobox A5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Hoxa5 (homeobox A5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	4	81,302,341 - 81,306,234 (-)	NCBI
Rnor_5.0	4	146,837,214 - 146,841,619 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	80,501,675 - 80,504,626 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	4	80,779,823 - 80,781,740 (-)	NCBI
Celera	4	76,192,532 - 76,196,931 (-)	NCBI		Celera
Cytogenetic Map	4	q24	NCBI

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Diaphragmatic Hernia (ISO)

head and neck squamous cell carcinoma (ISO)

Mouth Neoplasms (ISO)

pleomorphic xanthoastrocytoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2-butoxyethanol (ISO)

2-hydroxypropanoic acid (ISO)

4,4'-sulfonyldiphenol (ISO)

5-aza-2'-deoxycytidine (ISO)

all-trans-retinoic acid (EXP,ISO)

ammonium chloride (EXP)

antirheumatic drug (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

bis(2-chloroethyl) sulfide (ISO)

bisphenol A (ISO)

bisphenol F (ISO)

calcitriol (ISO)

cisplatin (ISO)

clobetasol (ISO)

cyclosporin A (ISO)

cytarabine (ISO)

diarsenic trioxide (ISO)

diethylstilbestrol (EXP)

diuron (EXP)

etoposide (ISO)

flavonoids (EXP)

folic acid (ISO)

genistein (ISO)

geraniol (ISO)

lipopolysaccharide (EXP)

mitoxantrone (ISO)

N1'-[2-[[5-[(dimethylamino)methyl]-2-furanyl]methylthio]ethyl]-N1-methyl-2-nitroethene-1,1-diamine (EXP)

nickel atom (ISO)

nitrofen (ISO)

oxaliplatin (EXP)

paracetamol (ISO)

perfluorodecanoic acid (ISO)

perfluorononanoic acid (ISO)

perfluorooctanoic acid (ISO)

phosgene (ISO)

pirinixic acid (ISO)

quercetin (ISO)

rac-lactic acid (ISO)

ranitidine (EXP)

sodium arsenite (ISO)

stigmasterol (ISO)

testosterone (ISO)

titanium dioxide (ISO)

topotecan (EXP)

trichostatin A (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

anterior/posterior pattern specification (IBA,ISO)

bronchiole development (ISO)

cartilage morphogenesis (ISO)

cell migration (ISO)

cell-cell signaling involved in mammary gland development (ISO)

embryonic skeletal system development (ISO)

embryonic skeletal system morphogenesis (ISO)

epithelial tube branching involved in lung morphogenesis (ISO)

intestinal epithelial cell maturation (ISO)

lobar bronchus epithelium development (ISO)

lung alveolus development (ISO)

lung development (ISO)

lung goblet cell differentiation (ISO)

lung-associated mesenchyme development (ISO)

mammary gland alveolus development (ISO)

mammary gland epithelial cell differentiation (ISO)

mesenchymal-epithelial cell signaling (ISO)

morphogenesis of an epithelium (ISO)

multicellular organism growth (ISO)

negative regulation of angiogenesis (ISO)

negative regulation of erythrocyte differentiation (ISO)

pattern specification process (ISO,TAS)

positive regulation of apoptotic process (ISO)

positive regulation of gene expression (ISO)

positive regulation of myeloid cell differentiation (ISO)

positive regulation of transcription by RNA polymerase II (ISO)

regulation of mammary gland epithelial cell proliferation (ISO)

regulation of transcription by RNA polymerase II (IBA)

respiratory gaseous exchange by respiratory system (ISO)

respiratory system process (ISO)

skeletal system development (ISO)

thyroid gland development (ISO)

trachea cartilage morphogenesis (ISO)

trachea morphogenesis (ISO)

Cellular Component

cellular_component (ND)

nucleus (IBA,ISO)

Molecular Function

DNA binding (ISO)

DNA-binding transcription activator activity, RNA polymerase II-specific (ISO)

DNA-binding transcription factor activity (ISO)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

molecular_function (ND)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA,ISO)

sequence-specific double-stranded DNA binding (ISO)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA data from the GO Consortium
3.	Gorski DH, etal., Biotechniques 1994 May;16(5):856-8, 860-2, 865.
4.	MGD data from the GO Consortium
5.	NCBI rat LocusLink and RefSeq merged data July 26, 2002
6.	RGD automated data pipeline
7.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8.	RGD automated import pipeline for gene-chemical interactions
9.	RGD comprehensive gene curation

Additional References at PubMed

PMID:2890554	PMID:7901120	PMID:7911971	PMID:8635464	PMID:8657138	PMID:9441679	PMID:9603431	PMID:10397719	PMID:10564089	PMID:10875927	PMID:10879542	PMID:11900462
PMID:12815622	PMID:15295088	PMID:15545268	PMID:16607641	PMID:16756717	PMID:17003488	PMID:17417799	PMID:17626057	PMID:17957028	PMID:23136161	PMID:29070584

Genomics

Comparative Map Data

Hoxa5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	4	81,302,341 - 81,306,234 (-)	NCBI
Rnor_5.0	4	146,837,214 - 146,841,619 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	80,501,675 - 80,504,626 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	4	80,779,823 - 80,781,740 (-)	NCBI
Celera	4	76,192,532 - 76,196,931 (-)	NCBI		Celera
Cytogenetic Map	4	q24	NCBI

HOXA5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	7	27,141,052 - 27,143,681 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	7	27,141,052 - 27,143,681 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	7	27,180,671 - 27,192,309 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
GRCh37	7	27,180,671 - 27,183,300 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	27,147,521 - 27,149,812 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	7	26,954,235 - 26,956,527	NCBI
Celera	7	27,169,928 - 27,172,220 (-)	NCBI
Cytogenetic Map	7	p15.2	NCBI
HuRef	7	27,061,238 - 27,063,851 (-)	NCBI		HuRef
CHM1_1	7	27,180,379 - 27,182,993 (-)	NCBI		CHM1_1
CRA_TCAGchr7v2	7	27,231,823 - 27,234,436 (-)	NCBI

Hoxa5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	52,178,734 - 52,181,567 (-)	NCBI	GRCm39		mm39
GRCm38	6	52,201,754 - 52,204,587 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	52,201,754 - 52,204,587 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	52,151,753 - 52,154,586 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	6	52,131,337 - 52,134,170 (-)	NCBI			mm8
Celera	6	52,723,406 - 52,726,239 (-)	NCBI		Celera
Cytogenetic Map	6	B3	NCBI
cM Map	6	25.4	NCBI

Hoxa5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955410	28,834,127 - 28,838,244 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955410	28,835,795 - 28,838,244 (-)	NCBI	ChiLan1.0	ChiLan1.0

HOXA5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	7	27,385,175 - 27,388,990 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	27,385,175 - 27,388,990 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	7	27,786,040 - 27,789,339 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

HOXA5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	14	40,315,639 - 40,317,768 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	14	40,315,409 - 40,319,001 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Hoxa5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936478	3,768,757 - 3,771,850 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

HOXA5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	18	45,421,663 - 45,432,885 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	18	45,429,691 - 45,432,723 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	18	50,062,880 - 50,065,910 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

HOXA5
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	31,224,017 - 31,227,819 (+)	NCBI
ChlSab1.1 Ensembl	21	31,224,977 - 31,227,994 (+)	Ensembl

Hoxa5
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624739	3,461,779 - 3,464,543 (+)	NCBI

Position Markers

Hoxa5

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	4	82,171,223 - 82,171,373	NCBI	Rnor6.0
Rnor_6.0	4	82,257,017 - 82,257,167	NCBI	Rnor6.0
Rnor_5.0	4	146,923,848 - 146,923,998	UniSTS	Rnor5.0
Rnor_5.0	4	146,838,054 - 146,838,204	UniSTS	Rnor5.0
RGSC_v3.4	4	80,502,545 - 80,502,695	UniSTS	RGSC3.4
Celera	4	76,193,372 - 76,193,522	UniSTS
Cytogenetic Map	4	q24	UniSTS

stSG609349

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	4	82,170,575 - 82,170,793	NCBI	Rnor6.0
Rnor_6.0	4	82,256,369 - 82,256,587	NCBI	Rnor6.0
Rnor_5.0	4	146,923,200 - 146,923,418	UniSTS	Rnor5.0
Rnor_5.0	4	146,837,406 - 146,837,624	UniSTS	Rnor5.0
RGSC_v3.4	4	80,501,897 - 80,502,115	UniSTS	RGSC3.4
Celera	4	76,192,724 - 76,192,942	UniSTS
Cytogenetic Map	4	q24	UniSTS

MARC_6217-6218:992007117:1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	4	82,170,609 - 82,170,843	NCBI	Rnor6.0
Rnor_6.0	4	82,256,403 - 82,256,637	NCBI	Rnor6.0
Rnor_5.0	4	146,923,234 - 146,923,468	UniSTS	Rnor5.0
Rnor_5.0	4	146,837,440 - 146,837,674	UniSTS	Rnor5.0
RGSC_v3.4	4	80,501,931 - 80,502,165	UniSTS	RGSC3.4
Celera	4	76,192,758 - 76,192,992	UniSTS
Cytogenetic Map	4	q24	UniSTS

UniSTS:57649

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	4	82,170,755 - 82,171,099	NCBI	Rnor6.0
Rnor_6.0	4	82,256,549 - 82,256,893	NCBI	Rnor6.0
Rnor_5.0	4	146,923,380 - 146,923,724	UniSTS	Rnor5.0
Rnor_5.0	4	146,837,586 - 146,837,930	UniSTS	Rnor5.0
RGSC_v3.4	4	80,502,077 - 80,502,421	UniSTS	RGSC3.4
Celera	4	76,192,904 - 76,193,248	UniSTS
Cytogenetic Map	4	q24	UniSTS

REN100511

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	4	82,170,497 - 82,170,771	NCBI	Rnor6.0
Rnor_6.0	4	82,256,291 - 82,256,565	NCBI	Rnor6.0
Rnor_5.0	4	146,923,122 - 146,923,396	UniSTS	Rnor5.0
Rnor_5.0	4	146,837,328 - 146,837,602	UniSTS	Rnor5.0
RGSC_v3.4	4	80,501,819 - 80,502,093	UniSTS	RGSC3.4
Celera	4	76,192,646 - 76,192,920	UniSTS
Cytogenetic Map	4	q24	UniSTS

REN100512

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	4	82,170,757 - 82,171,014	NCBI	Rnor6.0
Rnor_6.0	4	82,256,551 - 82,256,808	NCBI	Rnor6.0
Rnor_5.0	4	146,923,382 - 146,923,639	UniSTS	Rnor5.0
Rnor_5.0	4	146,837,588 - 146,837,845	UniSTS	Rnor5.0
RGSC_v3.4	4	80,502,079 - 80,502,336	UniSTS	RGSC3.4
Celera	4	76,192,906 - 76,193,163	UniSTS
Cytogenetic Map	4	q24	UniSTS

REN100522

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	4	82,172,878 - 82,173,124	NCBI	Rnor6.0
Rnor_6.0	4	82,258,673 - 82,258,919	NCBI	Rnor6.0
Rnor_5.0	4	146,925,504 - 146,925,750	UniSTS	Rnor5.0
Rnor_5.0	4	146,839,709 - 146,839,955	UniSTS	Rnor5.0
RGSC_v3.4	4	80,504,201 - 80,504,447	UniSTS	RGSC3.4
Celera	4	76,195,021 - 76,195,267	UniSTS
Cytogenetic Map	4	q24	UniSTS

Hoxa5

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	4	82,170,480 - 82,170,627	NCBI	Rnor6.0
Rnor_6.0	4	82,256,274 - 82,256,421	NCBI	Rnor6.0
Rnor_5.0	4	146,923,105 - 146,923,252	UniSTS	Rnor5.0
Rnor_5.0	4	146,837,311 - 146,837,458	UniSTS	Rnor5.0
RGSC_v3.4	4	80,501,802 - 80,501,949	UniSTS	RGSC3.4
Celera	4	76,192,629 - 76,192,776	UniSTS
Cytogenetic Map	4	q24	UniSTS

Hoxa5

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	4	82,170,485 - 82,170,666	NCBI	Rnor6.0
Rnor_6.0	4	82,256,279 - 82,256,460	NCBI	Rnor6.0
Rnor_5.0	4	146,923,110 - 146,923,291	UniSTS	Rnor5.0
Rnor_5.0	4	146,837,316 - 146,837,497	UniSTS	Rnor5.0
RGSC_v3.4	4	80,501,807 - 80,501,988	UniSTS	RGSC3.4
Celera	4	76,192,634 - 76,192,815	UniSTS
Cytogenetic Map	4	q24	UniSTS

Hoxa5

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	4	82,172,806 - 82,172,890	NCBI	Rnor6.0
Rnor_6.0	4	82,258,601 - 82,258,685	NCBI	Rnor6.0
Rnor_5.0	4	146,839,637 - 146,839,721	UniSTS	Rnor5.0
Rnor_5.0	4	146,925,432 - 146,925,516	UniSTS	Rnor5.0
Celera	4	76,194,949 - 76,195,033	UniSTS
Cytogenetic Map	4	q24	UniSTS

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	31
Count of miRNA genes:	31
Interacting mature miRNAs:	31
Transcripts:	ENSRNOT00000008523
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_024389	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC122669	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000142	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	L03556	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

NM_024389 ⟹ NP_077365

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	81,302,341 - 81,306,234 (-)	NCBI

RefSeq Acc Id:	XM_001059031
RefSeq Status:
Type:	CODING
Position:	No map positions available.

RefSeq Acc Id:

XM_001064984

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
RGSC_v3.4	4	80,501,675 - 80,504,626 (-)	RGD

RefSeq Acc Id:

XM_003753897 ⟹ XP_003753945

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Celera	4	76,192,532 - 76,196,931 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_077365	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAA67844	(Get FASTA)	NCBI Sequence Viewer
	P52949	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

XP_003753945 ⟸ XM_003753897

RefSeq Acc Id:

NP_077365 ⟸ NM_024389

Additional Information

External Database Links

Database	Acc Id	Source(s)
InterPro	Homeobox-like_sf	UniProtKB/Swiss-Prot
	Homeobox_antennapedia	UniProtKB/Swiss-Prot
	Homeobox_Antennapedia_CS	UniProtKB/Swiss-Prot
	Homeobox_CS	UniProtKB/Swiss-Prot
	Homeobox_dom	UniProtKB/Swiss-Prot
	Homeobox_metazoa	UniProtKB/Swiss-Prot
NCBI Gene	79241	ENTREZGENE
Pfam	Homeodomain	UniProtKB/Swiss-Prot
PhenoGen	Hoxa5	PhenoGen
PRINTS	ANTENNAPEDIA	UniProtKB/Swiss-Prot
	HOMEOBOX	UniProtKB/Swiss-Prot
PROSITE	ANTENNAPEDIA	UniProtKB/Swiss-Prot
	HOMEOBOX_1	UniProtKB/Swiss-Prot
	HOMEOBOX_2	UniProtKB/Swiss-Prot
SMART	HOX	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF46689	UniProtKB/Swiss-Prot
UniProt	HXA5_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-07-29	Hoxa5	homeo box A5	LOC100911546	homeobox protein Hox-A5-like	Data Merged	737654	PROVISIONAL
2015-07-29	Hoxa5	homeo box A5	LOC100909641	homeobox protein Hox-A5-like	Data Merged	737654	PROVISIONAL
2012-07-05	LOC100911546	homeobox protein Hox-A5-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2012-07-05	LOC100909641	homeobox protein Hox-A5-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2004-09-10	Hoxa5	homeo box A5			Symbol and Name status set to approved	1299863	APPROVED
2002-08-07	Hoxa5	homeo box A5			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD