Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References FTP Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer ACP Haplotyper Genome Scanner
Aging & Age-Related Disease Cancer Cardiovascular Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Genetic Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Hoxa5 (homeo box A5) Rattus norvegicus
Analyze
Symbol: Hoxa5
Name: homeo box A5
Description: ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN anterior/posterior pattern specification (ortholog); bronchiole development (ortholog); cartilage morphogenesis (ortholog); ASSOCIATED WITH Diaphragmatic Hernia (ortholog); Mouth Neoplasms (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN nucleus (ortholog); INTERACTS WITH all-trans-retinoic acid; ammonium chloride; diethylstilbestrol
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: homeobox protein Hox-1.3; homeobox protein Hox-A5; homeobox protein Hox-A5-like; hox-1.3; LOC100909641; LOC100911546
Orthologs:
Homo sapiens (human) : HOXA5 (homeobox A5)  HGNC  Alliance
Mus musculus (house mouse) : Hoxa5 (homeobox A5)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Hoxa5 (homeobox A5)
Pan paniscus (bonobo/pygmy chimpanzee) : HOXA5 (homeobox A5)
Canis lupus familiaris (dog) : HOXA5 (homeobox A5)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Hoxa5 (homeobox A5)
Sus scrofa (pig) : HOXA5 (homeobox A5)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_5.04146,837,214 - 146,841,619 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4480,501,675 - 80,504,626 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1480,779,823 - 80,781,740 (-)NCBI
Celera476,192,532 - 76,196,931 (-)NCBICelera
Cytogenetic Map4q24NCBI

Annotation    (Toggle Annotation Detail/Summary View)

Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
miRNA Target Status

Expression


Sequence

Nucleotide Sequences
Protein Sequences

Additional Information

External Database Links
Nomenclature History
  
More on Hoxa5
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 620609
Created: 2002-08-06
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



Contact Us |  About Us |  License CC BY 4.0 |  Legal Disclaimer |  © Medical College of Wisconsin
NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.