Igkvl4 (immunoglobulin kappa variable like 4) - Rat Genome Database

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Gene: Igkvl4 (immunoglobulin kappa variable like 4) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Igkvl4
Name: immunoglobulin kappa variable like 4
RGD ID: 11497379
Description: Predicted to be involved in immune response. Predicted to be part of immunoglobulin complex. Orthologous to human IGKV4-1 (immunoglobulin kappa variable 4-1).
Type: gene (Ensembl: protein-coding)
RefSeq Status: MODEL
Previously known as: ENSRNOG00000062607; Ig kappa chain V-IV region-like; LOC103691800
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84103,195,320 - 103,195,700 (-)NCBIGRCr8
mRatBN7.24101,645,320 - 101,645,700 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4101,645,320 - 101,645,700 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl4101,645,320 - 101,645,700 (-)NCBImRatBN7.2 Ensembl
Rnor_6.0317,345,487 - 17,346,198 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Celera316,577,498 - 16,578,209 (+)NCBICelera
Cytogenetic Map4q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Igkvl4Ratimmune response involved_inIBAMGI:98936 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Igkvl4Ratimmunoglobulin complex part_ofIBAPANTHER:PTN000587099 and UniProtKB:P016191600115GO_REF:0000033GO_CentralGO_REF:0000033



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Variants in Igkvl4
11 total Variants

1 to 10 of 57 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)485253748148090731Rat
631689Scl4Serum cholesterol level QTL 41.90.008blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)495174120140174120Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
1549843Bw53Body weight QTL 530.0001body mass (VT:0001259)body weight gain (CMO:0000420)461697658103194791Rat
1578655Bmd11Bone mineral density QTL 1111femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)490850165135850165Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)426775591168368347Rat
1357342Bw40Body weight QTL 400.001body mass (VT:0001259)body weight (CMO:0000012)476647384117676292Rat
631556Bp135Blood pressure QTL 1350.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)478881294117676292Rat
1358363Sradr3Stress Responsive Adrenal Weight QTL 36.19adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)457486946102486946Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)470362013132642728Rat

1 to 10 of 57 rows





GenBank Nucleotide JAXUCZ010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000100876   ⟹   ENSRNOP00000078820
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4101,645,320 - 101,645,700 (-)Ensembl
Ensembl Protein ENSRNOP00000078820.1
Ensembl Acc Id: ENSRNOP00000078820   ⟸   ENSRNOT00000100876
Ig-like


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 22 of 22 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-44241 BioCyc
Ensembl Genes ENSRNOG00000062607 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000090710 ENTREZGENE
Ensembl Transcript ENSRNOT00000100876.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
  IgV_Light_Chain UniProtKB/TrEMBL
NCBI Gene LOC103691800 ENTREZGENE
PANTHER IMMUNOGLOBULIN LIGHT CHAIN UniProtKB/TrEMBL
Pfam V-set UniProtKB/TrEMBL
PhenoGen Igkvl4 PhenoGen
PROSITE IG_LIKE UniProtKB/TrEMBL
RatGTEx ENSRNOG00000062607 RatGTEx
  ENSRNOG00000090710 RatGTEx
SMART IGv UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A8I5ZLJ1_RAT UniProtKB/TrEMBL
1 to 22 of 22 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Igkvl4  immunoglobulin kappa variable like 4  LOC103691800  Ig kappa chain V-IV region-like  Symbol and Name Changed 1299863 APPROVED
2022-06-02 LOC103691800  Ig kappa chain V-IV region-like  ENSRNOG00000062607    Data merged from RGD:150342636 737654 PROVISIONAL
2021-08-31 ENSRNOG00000062607        Symbol and Name status set to provisional 45752 PROVISIONAL
2016-08-02 LOC103691800  Ig kappa chain V-IV region-like      Symbol and Name status set to provisional 70820 PROVISIONAL