Pde1c (phosphodiesterase 1C) - Rat Genome Database

Name: Pde1c
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Pde1c (phosphodiesterase 1C) Rattus norvegicus

Analyze

Symbol:

Pde1c

Name:

phosphodiesterase 1C

RGD ID:

68332

Description:

Enables cAMP binding activity; calmodulin-activated 3',5'-cyclic-GMP phosphodiesterase activity; and calmodulin-activated dual specificity 3',5'-cyclic-GMP, 3',5'-cyclic-AMP phosphodiesterase activity. Involved in negative regulation of insulin secretion involved in cellular response to glucose stimulus. Acts upstream of or within response to calcium ion. Located in neuronal cell body. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 74. Orthologous to human PDE1C (phosphodiesterase 1C); PARTICIPATES IN protein kinase A (PKA) signaling pathway; calcium/calcium-mediated signaling pathway; purine metabolic pathway; INTERACTS WITH ammonium chloride; bisphenol A; chlorpyrifos.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

3',5'-cyclic-AMP phosphodiesterase; 3',5'-cyclic-GMP phosphodiesterase; calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C; cam-PDE 1C; cyclic nucleotide phosphodiesterase 1 C; dual specificity Calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C; phosphodiesterase 1C calmodulin-dependent (70kD)

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PDE1C (phosphodiesterase 1C)	HGNC	EggNOG, Ensembl, HomoloGene, NCBI, OMA, OrthoDB, OrthoMCL, Panther
Mus musculus (house mouse):	Pde1c (phosphodiesterase 1C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Pde1c (phosphodiesterase 1C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PDE1C (phosphodiesterase 1C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PDE1C (phosphodiesterase 1C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Pde1c (phosphodiesterase 1C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PDE1C (phosphodiesterase 1C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PDE1C (phosphodiesterase 1C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Pde1c (phosphodiesterase 1C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	HAS3 (hyaluronan synthase 3)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	PDE1C (phosphodiesterase 1C)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Pde1c (phosphodiesterase 1C)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	pde1cb (phosphodiesterase 1C, calmodulin-dependent b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	PDE2	Alliance	DIOPT (Ensembl Compara\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Pde1c	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	pde-1	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	pde1c	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	4	85,300,858 - 85,777,948 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	85,300,858 - 85,863,219 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	90,536,092 - 91,012,558 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	4	86,311,496 - 86,787,976 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	4	84,708,405 - 85,182,236 (-)	NCBI	Rnor_WKY
Rnor_6.0	4	86,359,762 - 86,925,044 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	86,359,820 - 86,630,543 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	151,012,195 - 151,485,775 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	84,936,642 - 85,448,339 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	85,180,112 - 85,587,782 (-)	NCBI
Celera	4	80,156,679 - 80,622,825 (-)	NCBI		Celera
Cytogenetic Map	4	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal dominant nonsyndromic deafness (ISO)

autosomal dominant nonsyndromic deafness 74 (ISO)

genetic disease (ISO)

pleomorphic xanthoastrocytoma (ISO)

prostate cancer (ISO)

substance-related disorder (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

3,4-methylenedioxymethamphetamine (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

ammonium chloride (EXP)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

cadmium atom (ISO)

CGP 52608 (ISO)

chlorpyrifos (EXP,ISO)

cisplatin (ISO)

clothianidin (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

dextran sulfate (ISO)

diazinon (EXP)

Didecyldimethylammonium (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

folic acid (ISO)

fosinopril (EXP)

genistein (ISO)

glycidol (EXP)

levonorgestrel (ISO)

lipopolysaccharide (ISO)

methapyrilene (ISO)

methylisothiazolinone (ISO)

methylmercury chloride (ISO)

nickel atom (ISO)

paracetamol (ISO)

PCB138 (ISO)

perfluorononanoic acid (ISO)

progesterone (ISO)

rotenone (EXP)

SB 431542 (ISO)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium fluoride (ISO)

temozolomide (ISO)

testosterone (EXP)

testosterone enanthate (EXP)

testosterone undecanoate (ISO)

titanium dioxide (ISO)

triclosan (ISO)

trimellitic anhydride (ISO)

triptonide (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of insulin secretion involved in cellular response to glucose stimulus (IMP)

response to calcium ion (IDA)

sensory perception of smell (ISO)

signal transduction (IEA)

Cellular Component

cilium (ISO)

lysosome (ISO,ISS)

neuronal cell body (IBA,IDA)

Molecular Function

3',5'-cyclic-AMP phosphodiesterase activity (ISO)

3',5'-cyclic-GMP phosphodiesterase activity (ISO)

3',5'-cyclic-nucleotide phosphodiesterase activity (IEA)

calmodulin binding (IEA)

calmodulin-activated 3',5'-cyclic-GMP phosphodiesterase activity (IBA,IDA)

calmodulin-activated dual specificity 3',5'-cyclic-GMP, 3',5'-cyclic-AMP phosphodiesterase activity (IDA,ISO)

cAMP binding (IDA)

metal ion binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

calcium/calcium-mediated signaling pathway (IEA)

protein kinase A (PKA) signaling pathway (ISO)

purine metabolic pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Biochemistry and physiology of cyclic nucleotide phosphodiesterases: essential components in cyclic nucleotide signaling.	Conti M and Beavo J, Annu Rev Biochem. 2007;76:481-511.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
4.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
5.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
6.	GOA pipeline	RGD automated data pipeline
7.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
9.	Gene expression and protein localization of calmodulin-dependent phosphodiesterase in adult rat retina.	Santone R, etal., J Neurosci Res. 2006 Oct;84(5):1020-6.
10.	Phosphodiesterase 3 and 4 comprise the major cAMP metabolizing enzymes responsible for insulin secretion in INS-1 (832/13) cells and rat islets.	Waddleton D, etal., Biochem Pharmacol. 2008 Oct 1;76(7):884-93. Epub 2008 Jul 26.
11.	Molecular cloning and characterization of a calmodulin-dependent phosphodiesterase enriched in olfactory sensory neurons.	Yan C, etal., Proc Natl Acad Sci U S A 1995 Oct 10;92(21):9677-81.

Additional References at PubMed

PMID:19305400	PMID:21148428	PMID:25608528	PMID:35538034

Genomics

Comparative Map Data

Pde1c
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	4	85,300,858 - 85,777,948 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	85,300,858 - 85,863,219 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	90,536,092 - 91,012,558 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	4	86,311,496 - 86,787,976 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	4	84,708,405 - 85,182,236 (-)	NCBI	Rnor_WKY
Rnor_6.0	4	86,359,762 - 86,925,044 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	86,359,820 - 86,630,543 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	151,012,195 - 151,485,775 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	84,936,642 - 85,448,339 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	85,180,112 - 85,587,782 (-)	NCBI
Celera	4	80,156,679 - 80,622,825 (-)	NCBI		Celera
Cytogenetic Map	4	q24	NCBI

PDE1C
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	31,616,777 - 32,428,224 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	7	31,751,179 - 32,428,131 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	31,790,793 - 32,467,836 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	31,795,772 - 32,077,516 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	7	31,602,486 - 31,884,231	NCBI
Celera	7	31,779,557 - 32,325,238 (-)	NCBI		Celera
Cytogenetic Map	7	p14.3	NCBI
HuRef	7	31,673,350 - 32,219,567 (-)	NCBI		HuRef
CHM1_1	7	31,792,207 - 32,337,961 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	7	31,754,475 - 32,567,499 (-)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	31,840,922 - 32,386,609 (-)	NCBI

Pde1c
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	56,046,783 - 56,629,590 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	56,046,789 - 56,629,472 (-)	Ensembl		GRCm39 Ensembl
GRCm38	6	56,069,798 - 56,652,510 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	56,069,804 - 56,652,487 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	56,019,798 - 56,319,628 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	56,011,359 - 56,292,097 (-)	NCBI		MGSCv36	mm8
Celera	6	60,236,120 - 60,238,326 (-)	NCBI		Celera
Celera	6	56,847,453 - 57,126,888 (-)	NCBI		Celera
Cytogenetic Map	6	B3	NCBI
cM Map	6	27.65	NCBI

Pde1c
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955410	32,792,649 - 33,257,291 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955410	32,790,720 - 33,257,760 (-)	NCBI	ChiLan1.0	ChiLan1.0

PDE1C
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	7	84,760,632 - 85,560,321 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	32,225,293 - 33,037,627 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	32,477,361 - 33,030,078 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	32,343,701 - 33,029,405 (-)	Ensembl	panpan1.1		panPan2

PDE1C
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	14	44,250,612 - 44,543,818 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	14	44,145,534 - 44,644,937 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	14	43,683,659 - 44,165,857 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	14	44,194,159 - 44,675,717 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	14	44,193,155 - 44,675,842 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	14	44,315,468 - 44,607,684 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	14	43,982,193 - 44,460,807 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	14	44,346,723 - 44,834,997 (-)	NCBI		UU_Cfam_GSD_1.0

Pde1c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	88,688,701 - 89,286,505 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936478	7,900,432 - 8,393,631 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936478	7,900,432 - 8,499,300 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PDE1C
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	18	40,820,644 - 41,409,087 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	18	40,818,316 - 41,410,555 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

PDE1C
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	26,094,604 - 26,712,127 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	21	26,501,264 - 26,598,053 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666042	78,073,957 - 78,643,089 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pde1c
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624783	1,027,548 - 1,139,231 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624783	1,025,606 - 1,708,803 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Pde1c
2689 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	90
Count of miRNA genes:	81
Interacting mature miRNAs:	85
Transcripts:	ENSRNOT00000017531
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2303168	Bp330	Blood pressure QTL 330	4.25	0.017	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	5214602	146446691	Rat
631261	Tcas3	Tongue tumor susceptibility QTL 3	6.88		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	4	10814170	91360527	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	11320076	180699135	Rat
12798520	Anxrr55	Anxiety related response QTL 55	4.45	0.01	locomotor behavior trait (VT:0001392)	number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)	4	32583980	114627242	Rat
8655961	Kidm43	Kidney mass QTL 43	18		kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	4	36303261	103194984	Rat
1358352	Srcrt3	Stress Responsive Cort QTL 3	2.29		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	38465774	146803430	Rat
1300139	Hrtrt6	Heart rate QTL 6	2.85		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	4	39524264	116179656	Rat
61445	Strs3	Sensitivity to stroke QTL 3	3		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	4	40433388	85433388	Rat
8694439	Bw168	Body weight QTL 168	9.57	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	4	40433414	85433414	Rat
6893678	Bw108	Body weight QTL 108	2.6	0.006	body mass (VT:0001259)	body weight (CMO:0000012)	4	43457976	88457976	Rat
1576305	Emca6	Estrogen-induced mammary cancer QTL 6	5.8		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	4	44463720	155883716	Rat
1354612	Foco1	Food consumption QTL 1	8.87		eating behavior trait (VT:0001431)	food intake rate (CMO:0000427)	4	44463908	148090542	Rat
1354660	Salc1	Saline consumption QTL 1	11.26		drinking behavior trait (VT:0001422)	saline drink intake rate (CMO:0001627)	4	44463908	148090542	Rat
2312567	Glom19	Glomerulus QTL 19	1.9	0.006	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	4	45456990	146803430	Rat
1298082	Stresp4	Stress response QTL 4			blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	50119848	146803430	Rat
70200	Alc18	Alcohol consumption QTL 18	9.2		drinking behavior trait (VT:0001422)	ethanol intake volume to total fluid intake volume ratio (CMO:0001591)	4	56647873	149491524	Rat
1641833	Alc21	Alcohol consumption QTL 21	8.6	0.0001	drinking behavior trait (VT:0001422)	ethanol drink intake rate (CMO:0001407)	4	56698790	126192555	Rat
631546	Bp86	Blood pressure QTL 86	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	57114432	91360801	Rat
634311	Sach7	Saccharin preference QTL 7			taste sensitivity trait (VT:0001986)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	4	57114432	102114432	Rat
1358363	Sradr3	Stress Responsive Adrenal Weight QTL 3	6.19		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	4	57486946	102486946	Rat
1558651	Swd3	Spike wave discharge measurement QTL 3	4.62	0.000024	brain electrophysiology trait (VT:0010557)	brain spike-and-wave discharge frequency (CMO:0001742)	4	58432133	92991462	Rat
738009	Sach4	Saccharine consumption QTL 4	4.9	0.000016	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	4	59948935	154902892	Rat
738016	Alc16	Alcohol consumption QTL 16	3.6	0.00015	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	59948935	154902892	Rat
738031	Alc14	Alcohol consumption QTL 14	7.6	0.00003	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	59948935	154902892	Rat
1578657	Bss12	Bone structure and strength QTL 12	8.9		femur morphology trait (VT:0000559)	femoral neck cross-sectional area (CMO:0001697)	4	60220938	105220938	Rat
1578658	Bss13	Bone structure and strength QTL 13	8		femur strength trait (VT:0010010)	femoral neck polar moment of inertia (CMO:0001670)	4	60220938	105220938	Rat
2300179	Bmd50	Bone mineral density QTL 50	5.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	4	60928534	105928534	Rat
1549843	Bw53	Body weight QTL 53		0.0001	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	61697658	103194791	Rat
1549839	Bw52	Body weight QTL 52		0.0001	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	61697658	115089733	Rat
61418	Pia5	Pristane induced arthritis QTL 5	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	62277855	128289560	Rat
6478743	Anxrr40	Anxiety related response QTL 40		0.83076	defecation behavior trait (VT:0010462)	defecation rate (CMO:0000998)	4	62753847	107753847	Rat
6478772	Anxrr49	Anxiety related response QTL 49		0.15488	defecation behavior trait (VT:0010462)	defecation rate (CMO:0000998)	4	62753847	107753847	Rat
6478684	Anxrr30	Anxiety related response QTL 30		0.00087	defecation behavior trait (VT:0010462)	defecation rate (CMO:0000998)	4	62753847	107753847	Rat
631651	Bp124	Blood pressure QTL 124	3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	62879517	107879517	Rat
7394826	Bw126	Body weight QTL 126		0.002	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	62933269	87483707	Rat
70192	BpQTLcluster5	Blood pressure QTL cluster 5	4.183		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	4	62933508	114921294	Rat
70192	BpQTLcluster5	Blood pressure QTL cluster 5	4.183		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	62933508	114921294	Rat
70192	BpQTLcluster5	Blood pressure QTL cluster 5	4.183		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	62933508	114921294	Rat
70192	BpQTLcluster5	Blood pressure QTL cluster 5	4.183		arterial blood pressure trait (VT:2000000)	percent change in mean arterial blood pressure (CMO:0002035)	4	62933508	114921294	Rat
70192	BpQTLcluster5	Blood pressure QTL cluster 5	4.183		arterial blood pressure trait (VT:2000000)	percent change in systolic blood pressure (CMO:0000747)	4	62933508	114921294	Rat
70192	BpQTLcluster5	Blood pressure QTL cluster 5	4.183		arterial blood pressure trait (VT:2000000)	absolute change in pulse pressure (CMO:0001882)	4	62933508	114921294	Rat
70192	BpQTLcluster5	Blood pressure QTL cluster 5	4.183		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	4	62933508	114921294	Rat
631674	Iddm14	Insulin dependent diabetes mellitus QTL 14			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	4	64528739	157573521	Rat
2312569	Pur19	Proteinuria QTL 19	3.4	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	4	65882107	96130297	Rat
61330	Eau1	Experimental allergic uveoretinitis QTL 1		0.0003	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	4	70362013	132642728	Rat
634344	Hcar7	Hepatocarcinoma resistance QTL 7	7.8		liver integrity trait (VT:0010547)	liver tumorous lesion area to total liver area ratio (CMO:0001075)	4	70808386	115808386	Rat
634344	Hcar7	Hepatocarcinoma resistance QTL 7	7.8		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	4	70808386	115808386	Rat
631646	Stl4	Serum triglyceride level QTL 4	6.5	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	4	73169846	132642728	Rat
724522	Bp146	Blood pressure QTL 146	2.2	0.0021	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	73630210	118630210	Rat
2302051	Pia28	Pristane induced arthritis QTL 28	5.3	0.001	blood autoantibody amount (VT:0003725)	serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)	4	73630210	118630210	Rat
70167	Bw22	Body weight QTL 22	3.1		body mass (VT:0001259)	body weight (CMO:0000012)	4	76647384	117676292	Rat
1357342	Bw40	Body weight QTL 40		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	4	76647384	117676292	Rat
631662	Hcar2	Hepatocarcinoma resistance QTL 2	3.1	0.0003	liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	4	78878504	123878504	Rat
631556	Bp135	Blood pressure QTL 135		0.017	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	78881294	117676292	Rat
61364	Iddm2	Insulin dependent diabetes mellitus QTL 2			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	78885890	102684881	Rat
738015	Pia9	Pristane induced arthritis QTL 9	4.5	0.048	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	80694870	125694870	Rat
2306899	Bp338	Blood pressure QTL 338		0.071	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	81006124	120102625	Rat
1641919	Alc22	Alcohol consumption QTL 22		0.0005	drinking behavior trait (VT:0001422)	ethanol drink intake rate (CMO:0001407)	4	81192555	126192555	Rat
70177	Xhs1	X-ray hypersensitivity QTL 1	25.1		intestine integrity trait (VT:0010554)	post-insult time to onset of moribundity (CMO:0001896)	4	82798864	152731274	Rat
2306794	Ean2	Experimental allergic neuritis QTL 2	6.4		nervous system integrity trait (VT:0010566)	IFNG-secreting splenocyte count (CMO:0002122)	4	83428419	95853334	Rat
1576316	Ept5	Estrogen-induced pituitary tumorigenesis QTL 5	3.8		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	4	83428419	177635233	Rat
634334	Xhs3	X-ray hypersensitivity QTL 3	10		intestine integrity trait (VT:0010554)	post-insult time to onset of moribundity (CMO:0001896)	4	84728680	129854654	Rat
1582232	Gluco25	Glucose level QTL 25	3.6	0.0023	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	85253748	148090731	Rat
12798523	Anxrr56	Anxiety related response QTL 56	2.83	0.05	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	85253748	150276390	Rat
1358202	Gluco11	Glucose level QTL 11	2.4	0.02	adipocyte glucose uptake trait (VT:0004185)	absolute change in adipocyte glucose uptake (CMO:0000873)	4	85379421	167139601	Rat

Markers in Region

D4Rat34

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	85,379,421 - 85,379,614 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	86,438,317 - 86,438,507	NCBI	Rnor6.0
Rnor_5.0	4	151,090,671 - 151,090,861	UniSTS	Rnor5.0
RGSC_v3.4	4	85,014,032 - 85,014,222	UniSTS	RGSC3.4
RGSC_v3.4	4	85,014,031 - 85,014,222	RGD	RGSC3.4
RGSC_v3.1	4	85,257,503 - 85,257,693	RGD
Celera	4	80,234,809 - 80,234,999	UniSTS
RH 3.4 Map	4	533.1	RGD
RH 3.4 Map	4	533.1	UniSTS
SHRSP x BN Map	4	43.1	UniSTS
SHRSP x BN Map	4	43.1	RGD
FHH x ACI Map	4	53.55	RGD
Cytogenetic Map	4	q24	UniSTS

D4Got260

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	85,478,419 - 85,478,509 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	86,536,950 - 86,537,039	NCBI	Rnor6.0
Rnor_5.0	4	151,189,304 - 151,189,393	UniSTS	Rnor5.0
RGSC_v3.4	4	85,140,162 - 85,140,251	UniSTS	RGSC3.4
Celera	4	80,333,729 - 80,333,818	UniSTS
Cytogenetic Map	4	q24	UniSTS

BF410175

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	85,334,574 - 85,334,686 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	86,393,783 - 86,393,894	NCBI	Rnor6.0
Rnor_5.0	4	151,046,137 - 151,046,248	UniSTS	Rnor5.0
RGSC_v3.4	4	84,969,981 - 84,970,092	UniSTS	RGSC3.4
Celera	4	80,190,079 - 80,190,190	UniSTS
RH 3.4 Map	4	536.8	UniSTS
Cytogenetic Map	4	q24	UniSTS

RH137601

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	85,330,833 - 85,330,978 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	86,390,042 - 86,390,186	NCBI	Rnor6.0
Rnor_5.0	4	151,042,396 - 151,042,540	UniSTS	Rnor5.0
RGSC_v3.4	4	84,966,240 - 84,966,384	UniSTS	RGSC3.4
Celera	4	80,186,338 - 80,186,482	UniSTS
RH 3.4 Map	4	538.82	UniSTS
Cytogenetic Map	4	q24	UniSTS

BF401579

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	85,310,840 - 85,310,991 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	86,369,792 - 86,369,942	NCBI	Rnor6.0
Rnor_5.0	4	151,022,146 - 151,022,296	UniSTS	Rnor5.0
RGSC_v3.4	4	84,945,870 - 84,946,020	UniSTS	RGSC3.4
Celera	4	80,166,345 - 80,166,495	UniSTS
RH 3.4 Map	4	534.4	UniSTS
Cytogenetic Map	4	q24	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium									21		3
Low	2	29	21	6	11	6	8	8	53	35	33	7	8
Below cutoff	1	14	11	10	8	10		3			4	4

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_031078	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008762922	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008762923	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008762924	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592911	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592912	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039108432	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039108433	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039108434	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039108435	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005503320	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_592091	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF328797	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF328798	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF328799	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF328800	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF329856	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000142	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	L41045	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000017531 ⟹ ENSRNOP00000017531

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	85,300,858 - 85,572,273 (-)	Ensembl
Rnor_6.0 Ensembl	4	86,359,820 - 86,466,797 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000081244 ⟹ ENSRNOP00000075405

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	85,357,946 - 85,572,856 (-)	Ensembl
Rnor_6.0 Ensembl	4	86,396,215 - 86,630,543 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000097934 ⟹ ENSRNOP00000084095

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	85,301,353 - 85,579,773 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000098034 ⟹ ENSRNOP00000077659

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	85,336,544 - 85,572,081 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000098186 ⟹ ENSRNOP00000096395

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	85,300,858 - 85,778,022 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000102583 ⟹ ENSRNOP00000095937

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	85,301,353 - 85,572,273 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000105428 ⟹ ENSRNOP00000078829

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	85,300,858 - 85,863,219 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000114533 ⟹ ENSRNOP00000078259

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	85,336,544 - 85,579,773 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000118567 ⟹ ENSRNOP00000089783

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	85,336,544 - 85,778,022 (-)	Ensembl

RefSeq Acc Id:

NM_031078 ⟹ NP_112340

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	85,300,858 - 85,777,936 (-)	NCBI
Rnor_6.0	4	86,359,820 - 86,833,450 (-)	NCBI
Rnor_5.0	4	151,012,195 - 151,485,775 (-)	NCBI
RGSC_v3.4	4	84,936,642 - 85,448,339 (-)	RGD
Celera	4	80,156,679 - 80,622,825 (-)	RGD

Sequence:

show sequence

AACACACCTAGAAGAAGCACGACTTCAGTCCCCGCTATTCCCTCGGGGTCCCCCAACCTCCTCC
AGCCTCCAGAGAGCGGAGCGCGAAGGGGCGCGGCAGCCCGGGCCAGCCCACAGCTACACATAGC
CTTGTCAGTCCCCCTGCCGTCGCAGCTGCAGCGGGCTCGGGATGGGGCAGTGGCAGGGGCGCAG
GGGCTTCACTCGGAGCCTTGGTTATTAGCTCCCAGGTCTGGGTGCCTGCAGCCGGCGTGAGCAG
CTTGTACCTAGCGCGGGTCTGCAGTGACAGTGCAGCGGAGGGAGGCTGGGCGCGGGCTCAAGCC
AGGACCCGGGACACACGAGTCATGACGGACACCAGCCACAAGAAGGAGGGCTTCAAGAAATGTA
GGAGCGCCACTTTCAGCATCGACGGGTACAGCTTCACCATCGTTGCAAATGAAGCAGGAGATAA
GAATGCCAGACCCCTTGCACGCTTCTCCCGATCTAAGTCACAGAACTGTCTGTGGAACTCCCTC
ATTGATGGCCTCACTGGGAATGTTAAGGAGAAGCCACGGCCAACAATTGTCCAGGACACCCGAC
CCCCAGAAGAAATTCTGGCAGATGAATTGCCACAACTGGATAGCCCAGAAGCTTTGGTGAAGAC
ATCCTTCAGGTTACGGTCTTTGGTCAAGCAATTAGAGCGAGGAGAGGCCTCTGTGGTAGATCTT
AAGAAGAATCTGGAATATGCAGCCACAGTGCTTGAGTCTGTATATATTGATGAAACAAGGCGCC
TGCTGGATACAGAGGATGAACTTAGTGACATTCAGTCAGATGCTGTGCCTTCTGAAGTTCGGGA
TTGGCTGGCCTCCACCTTCACTCGGCAGATGGGGATGATGCTTAGGAGAAGCGATGAGAAGCCC
AGGTTCAAGAGCATTGTCCATGCAGTGCAAGCTGGGATATTTGTGGAGAGAATGTATAGACGGA
CATCAAACATGGTTGGGTTGAGCTATCCACCGGCTGTAATCGATGCACTGAAGGATGTGGACAC
ATGGTCCTTCGATGTCTTTTCCCTCAATGAGGCCAGTGGAGATCATGCTTTGAAGTTCATTTTC
TATGAATTACTCACACGTTATGACTTGATCAGCCGTTTTAAGATACCCATTTCTGCACTTGTCT
CATTTGTGGAGGCCCTTGAAGTTGGTTACAGCAAGCACAAAAATCCTTACCATAACCTGATGCA
TGCCGCCGATGTCACACAGACTGTGCATTACCTCCTTTATAAGACGGGAGTAGCAAACTGGCTG
ACGGAGCTGGAGATCTTTGCAATAATCTTCTCGGCTGCCATCCATGACTATGAACATACTGGAA
CTACCAACAATTTCCACATTCAGACTCGGTCGGATCCAGCTATCCTGTACAATGACAGATCTGT
ACTGGAGAACCACCACTTGAGTGCAGCCTACCGTCTTCTCCAGGAAGATGAAGAGATGAATATT
CTGGTCAACCTCTCAAAGGATGACTGGAGGGAGTTTCGAACTTTGGTAATCGAGATGGTAATGG
CCACAGATATGTCCTGTCATTTCCAACAAATCAAAGCCATGAAGACAGCCCTGCAGCAACCAGA
AGCAATTGAAAAGCCGAAAGCCTTATCCCTCATGCTGCACACAGCAGACATCAGTCATCCTGCG
AAAGCGTGGGACTTGCACCACCGCTGGACCATGTCTCTCCTGGAGGAGTTCTTTAGACAGGGTG
ACAGAGAAGCTGAGCTGGGGCTGCCATTTTCTCCTCTGTGTGACCGAAAGTCAACCATGGTTGC
TCAGTCACAAGTGGGTTTTATTGACTTCATTGTGGAACCTACCTTCACTGTGCTCACGGATATG
ACTGAGAAGATTGTGAGTCCATTAATCGATGAAACCTCCCAGACTGGCGGGACAGGCCAGAGGC
GATCAAGTTTGAACAGCATCAACTCATCCGATGCAAAGCGATCAGGTGTCAAGAGTTCTGGGTC
AGAAGGAAGTGCTCCCATCAACAATTCTGTCATCCCTGTTGACTACAAGAGTTTTAAAGCCACT
TGGACCGAGGTGGTGCAGATCAATCGGGAGCGGTGGCGAGCCAAGGTTCCCAAAGAAGAGAAAG
CCAAGAAGGAAGCTGAAGAGAAGGCTCGCCTAGCTGCTGAGGAAAAGCAAAAGGAAATGGAAGC
CAAAAGCCAAGCTGAACAAGGCACAACCAGCAAAGCTGAAAAAAAGACATCAGGAGAAACAAAA
GGTCAAGTCAACGGAACACGCACAAGCAAGGGTGACAACCCTCGTGGGAAGAACTCCAAAGGCG
ACAAGGCAGGCGAAAAGCAGCAGAATGGTGACTTGAAAGATGGTAAAAATAAGGCAGACAAGAA
GGATCACTCCAACACCGGAAATGAGTCAAAGAAAGCAGATGGTACCAAGAAGCGTTCTCATGGC
TCACCTGCTCCAAGCACTAGTTCCACAAGTCGCCTTACCTTGCCAGTCATCAAGCCTCCTTTGC
GTCACTTTAAGCGTCCTGCTTATGCATCTAGTTCCTACGCACCTTCCGTTCCAAAGAAAACTGA
TGATCATCCCGTAAGGTACAAGATGCTGGATCAGCGGATCAAGATAAAAAAGATCCAGAACATC
TCTCATCACTGGAACAAAAAGTAGGGCAAGTTTAAGAACTGAGGGAGTGGGGGAGGGCCGACCG
ACCTGCCTGCCTACCTCTCAGCACCTACTACACACACCAGGACACACCCCCGAAGTCATGCAGC
TGGCACTACTGTGGCTGACCCTGAGAGTCAAAGTGAAATTTGCCTGAGATCCCTCTTGGTCATT
TTGTTATAGATGCACCAGTCACTACATTTGGAGTCAATCAAGACTCCAGCAAGAAGCTAGTAAA
TGGTAGACTTATTTGATTTTACTTTGTAGGCCTTTAAAAGTCTTAAGTTGCAATCAAATTAAAA
ATGATATATCTTATCCTAAAAAATAAAATTCTTCCCACTGCCCTGTTTTCATCCCCAAGAGATG
ATTTACCTTTACATGAACACTGCCTTAAAACTGTCAGGGGTACGAAATGTACTTTTAAAAATAA
CTTTTCCAATTAAAATGATGTTATTTTGTGAAATTAAAATATAAATATACCATTTTTTCTTTCA
TTTTCCCTTCTTCCAAACCTTTACATATACATTTGTTCTCTCTCAAAAGC

hide sequence

RefSeq Acc Id:

XM_008762922 ⟹ XP_008761144

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	85,300,869 - 85,572,854 (-)	NCBI
Rnor_6.0	4	86,359,766 - 86,630,559 (-)	NCBI

Sequence:

show sequence

GAGAGAGAGAGAGAGAGAGAACACGAATCAATCCTATTAGTAAGAAAACACAAGGGCTTTGTGC
TGGGAAGCTCCAGACTTCCCTTCCTTGGGGCGAGGAGCCCTGTTCTTTATGCAGTGCGGGCAGC
CATCATAGCAGGGCATAGGGCTGGGTGGCCAAGGGCTGCCTGCGGGGGCAGGTGTGGAGCTCCT
GCCCTGCTGACAGTGTTGAACCCTCCTTCAGCACCCGGGGTGCCAGCCCTGTCACTAGCCCCAC
GCTGACAAAAGACTTTTCTCACTTGTCAGTTCTTGCTTATCAGCAGGGCTTGCTGTTCTCCTTT
TGCCTCTAAATCCTCCGGGGACCGCAGGTAGCTTCCGTGGCTTCGTTTAAAGGAAAAAAGAACA
GGAACAGACTCCGGGTCCTACGCACAGTCCTTATCCCGGTCCCTGGCAGTAGTGAGCATCATGG
CTGGTTTCCGCAGCTGCCTCCAGCGCGCACCTGGGACCGGAGTCCTCTGTGATCCTAGCAGGCT
CTGAGCCATCTCTGGGGACGCTTGCAGGGGAAGTAACAAAGTGACTGAAAGACTCACTGGGCTG
GACCCAGCAAAGAGAGGTGGCTGGGCAGGGACTACACAAACTCTCTCCACCTCACCCCCAGTGA
GAACCTGCAGCTATGGAGTCTCCAACAAAGGAAATTGAAGAATTCGAGAGCAACTCTCTGAAAC
ACCTGCAACCCGAGCAGATCGAAAAAATCTGGCTTCGGCTCCGTGGGCTGAGGAAATATAAGAA
AACGTCCCAGAGGTTACGGTCTTTGGTCAAGCAATTAGAGCGAGGAGAGGCCTCTGTGGTAGAT
CTTAAGAAGAATCTGGAATATGCAGCCACAGTGCTTGAGTCTGTATATATTGATGAAACAAGGC
GCCTGCTGGATACAGAGGATGAACTTAGTGACATTCAGTCAGATGCTGTGCCTTCTGAAGTTCG
GGATTGGCTGGCCTCCACCTTCACTCGGCAGATGGGGATGATGCTTAGGAGAAGCGATGAGAAG
CCCAGGTTCAAGAGCATTGTCCATGCAGTGCAAGCTGGGATATTTGTGGAGAGAATGTATAGAC
GGACATCAAACATGGTTGGGTTGAGCTATCCACCGGCTGTAATCGATGCACTGAAGGATGTGGA
CACATGGTCCTTCGATGTCTTTTCCCTCAATGAGGCCAGTGGAGATCATGCTTTGAAGTTCATT
TTCTATGAATTACTCACACGTTATGACTTGATCAGCCGTTTTAAGATACCCATTTCTGCACTTG
TCTCATTTGTGGAGGCCCTTGAAGTTGGTTACAGCAAGCACAAAAATCCTTACCATAACCTGAT
GCATGCCGCCGATGTCACACAGACTGTGCATTACCTCCTTTATAAGACGGGAGTAGCAAACTGG
CTGACGGAGCTGGAGATCTTTGCAATAATCTTCTCGGCTGCCATCCATGACTATGAACATACTG
GAACTACCAACAATTTCCACATTCAGACTCGGTCGGATCCAGCTATCCTGTACAATGACAGATC
TGTACTGGAGAACCACCACTTGAGTGCAGCCTACCGTCTTCTCCAGGAAGATGAAGAGATGAAT
ATTCTGGTCAACCTCTCAAAGGATGACTGGAGGGAGTTTCGAACTTTGGTAATCGAGATGGTAA
TGGCCACAGATATGTCCTGTCATTTCCAACAAATCAAAGCCATGAAGACAGCCCTGCAGCAACC
AGAAGCAATTGAAAAGCCGAAAGCCTTATCCCTCATGCTGCACACAGCAGACATCAGTCATCCT
GCGAAAGCGTGGGACTTGCACCACCGCTGGACCATGTCTCTCCTGGAGGAGTTCTTTAGACAGG
GTGACAGAGAAGCTGAGCTGGGGCTGCCATTTTCTCCTCTGTGTGACCGAAAGTCAACCATGGT
TGCTCAGTCACAAGTGGGTTTTATTGACTTCATTGTGGAACCTACCTTCACTGTGCTCACGGAT
ATGACTGAGAAGATTGTGAGTCCATTAATCGATGAAACCTCCCAGACTGGCGGGACAGGCCAGA
GGCGATCAAGTTTGAACAGCATCAACTCATCCGATGCAAAGCGATCAGGTGTCAAGAGTTCTGG
GTCAGAAGGAAGTGCTCCCATCAACAATTCTGTCATCCCTGTTGACTACAAGAGTTTTAAAGCC
ACTTGGACCGAGGTGGTGCAGATCAATCGGGAGCGGTGGCGAGCCAAGGTTCCCAAAGAAGAGA
AAGCCAAGAAGGAAGCTGAAGAGAAGGCTCGCCTAGCTGCTGAGGAAAAGCAAAAGGAAATGGA
AGCCAAAAGCCAAGCTGAACAAGGCACAACCAGCAAAGCTGAAAAAAAGACATCAGGAGAAACA
AAAGGTCAAGTCAACGGAACACGCACAAGCAAGGGTGACAACCCTCGTGGGAAGAACTCCAAAG
GCGACAAGGCAGGCGAAAAGCAGCAGAATGGTGACTTGAAAGATGGTAAAAATAAGGCAGACAA
GAAGGATCACTCCAACACCGGAAATGAGTCAAAGAAAGCAGATGGTACCAAGAAGCGTTCTCAT
GGCTCACCTGCTCCAAGCACTAGTTCCACAAGTCGCCTTACCTTGCCAGTCATCAAGCCTCCTT
TGCGTCACTTTAAGCGTCCTGCTTATGCATCTAGTTCCTACGCACCTTCCGTTCCAAAGAAAAC
TGATGATCATCCCGTAAGGTACAAGATGCTGGATCAGCGGATCAAGATGAAAAAGATCCAGAAC
ATCTCTCATCACTGGAACAAAAAGTAGGGCAAGTTTAAGAACTGAGGGAGTGGGGGAGGGCCGA
CCGACCTGCCTGCCTACCTCTCAGCACCTACTACACACACCAGGACACACCCCCGAAGTCATGC
AGCTGGCACTACTGTGGCTGACCCTGAGAGTCAAAGTGAAATTTGCCTGAGATTCCTCTTGGTC
ATTTTGTTATAGATGCACCAGTCACTACATTTGGAGTCAATCAAGACTCCAGCAAGAAGCTAGT
AAATGGTAGACTTATTTGATTTTACTTTGTAGGCCTTTAAAAGTCTTAAGTTGCAATCAAATTA
AAAATGATATATCTTATCCTAAAAAATAAAATTCTTCCCACTGCCCTGTTTTCATCCCCAAGAG
ATGATTTACCTTTACATGAACACTGCCTTAAAACTGTCAGGGGTACGAAATGTACTTTTAAAAA
TAACTTTTCCAATTAAAATGATGTTATTTTGTGAAATTAAAATATAAATATACCATTTTTTCTT
TCATTTTCCCTTCTTCCAAACCTTTACATATACATTTGTTCTCTCTCAAAAGCATGGCTTCTTT
TGTTTTATTGTATACTATATATATATGTATATGTATATATATA

hide sequence

RefSeq Acc Id:

XM_039108432 ⟹ XP_038964360

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	85,303,579 - 85,777,948 (-)	NCBI

RefSeq Acc Id:

XM_039108433 ⟹ XP_038964361

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	85,300,868 - 85,777,948 (-)	NCBI

RefSeq Acc Id:

XM_039108434 ⟹ XP_038964362

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	85,300,869 - 85,572,854 (-)	NCBI

RefSeq Acc Id:

XM_039108435 ⟹ XP_038964363

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	85,330,758 - 85,777,947 (-)	NCBI

RefSeq Acc Id:

XR_005503320

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	85,300,868 - 85,777,948 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_112340	(Get FASTA)	NCBI Sequence Viewer
	XP_008761144	(Get FASTA)	NCBI Sequence Viewer
	XP_038964360	(Get FASTA)	NCBI Sequence Viewer
	XP_038964361	(Get FASTA)	NCBI Sequence Viewer
	XP_038964362	(Get FASTA)	NCBI Sequence Viewer
	XP_038964363	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAB00868	(Get FASTA)	NCBI Sequence Viewer
	AAG61119	(Get FASTA)	NCBI Sequence Viewer
	AAK32136	(Get FASTA)	NCBI Sequence Viewer
	AAK32137	(Get FASTA)	NCBI Sequence Viewer
	AAK32138	(Get FASTA)	NCBI Sequence Viewer
	AAK32139	(Get FASTA)	NCBI Sequence Viewer
	EDL88058	(Get FASTA)	NCBI Sequence Viewer
	EDL88059	(Get FASTA)	NCBI Sequence Viewer
	EDL88060	(Get FASTA)	NCBI Sequence Viewer
	EDL88061	(Get FASTA)	NCBI Sequence Viewer
	EDL88062	(Get FASTA)	NCBI Sequence Viewer
	Q63421	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_112340 ⟸ NM_031078

- UniProtKB:

Q63421 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MTDTSHKKEGFKKCRSATFSIDGYSFTIVANEAGDKNARPLARFSRSKSQNCLWNSLIDGLTGN
VKEKPRPTIVQDTRPPEEILADELPQLDSPEALVKTSFRLRSLVKQLERGEASVVDLKKNLEYA
ATVLESVYIDETRRLLDTEDELSDIQSDAVPSEVRDWLASTFTRQMGMMLRRSDEKPRFKSIVH
AVQAGIFVERMYRRTSNMVGLSYPPAVIDALKDVDTWSFDVFSLNEASGDHALKFIFYELLTRY
DLISRFKIPISALVSFVEALEVGYSKHKNPYHNLMHAADVTQTVHYLLYKTGVANWLTELEIFA
IIFSAAIHDYEHTGTTNNFHIQTRSDPAILYNDRSVLENHHLSAAYRLLQEDEEMNILVNLSKD
DWREFRTLVIEMVMATDMSCHFQQIKAMKTALQQPEAIEKPKALSLMLHTADISHPAKAWDLHH
RWTMSLLEEFFRQGDREAELGLPFSPLCDRKSTMVAQSQVGFIDFIVEPTFTVLTDMTEKIVSP
LIDETSQTGGTGQRRSSLNSINSSDAKRSGVKSSGSEGSAPINNSVIPVDYKSFKATWTEVVQI
NRERWRAKVPKEEKAKKEAEEKARLAAEEKQKEMEAKSQAEQGTTSKAEKKTSGETKGQVNGTR
TSKGDNPRGKNSKGDKAGEKQQNGDLKDGKNKADKKDHSNTGNESKKADGTKKRSHGSPAPSTS
STSRLTLPVIKPPLRHFKRPAYASSSYAPSVPKKTDDHPVRYKMLDQRIKIKKIQNISHHWNKK

hide sequence

RefSeq Acc Id:	XP_008761144 ⟸ XM_008762922
- Peptide Label:	isoform X2
- UniProtKB:	F1LMX4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MESPTKEIEEFESNSLKHLQPEQIEKIWLRLRGLRKYKKTSQRLRSLVKQLERGEASVVDLKKN LEYAATVLESVYIDETRRLLDTEDELSDIQSDAVPSEVRDWLASTFTRQMGMMLRRSDEKPRFK SIVHAVQAGIFVERMYRRTSNMVGLSYPPAVIDALKDVDTWSFDVFSLNEASGDHALKFIFYEL LTRYDLISRFKIPISALVSFVEALEVGYSKHKNPYHNLMHAADVTQTVHYLLYKTGVANWLTEL EIFAIIFSAAIHDYEHTGTTNNFHIQTRSDPAILYNDRSVLENHHLSAAYRLLQEDEEMNILVN LSKDDWREFRTLVIEMVMATDMSCHFQQIKAMKTALQQPEAIEKPKALSLMLHTADISHPAKAW DLHHRWTMSLLEEFFRQGDREAELGLPFSPLCDRKSTMVAQSQVGFIDFIVEPTFTVLTDMTEK IVSPLIDETSQTGGTGQRRSSLNSINSSDAKRSGVKSSGSEGSAPINNSVIPVDYKSFKATWTE VVQINRERWRAKVPKEEKAKKEAEEKARLAAEEKQKEMEAKSQAEQGTTSKAEKKTSGETKGQV NGTRTSKGDNPRGKNSKGDKAGEKQQNGDLKDGKNKADKKDHSNTGNESKKADGTKKRSHGSPA PSTSSTSRLTLPVIKPPLRHFKRPAYASSSYAPSVPKKTDDHPVRYKMLDQRIKMKKIQNISHH WNKK hide sequence

RefSeq Acc Id:

ENSRNOP00000017531 ⟸ ENSRNOT00000017531

RefSeq Acc Id:

ENSRNOP00000075405 ⟸ ENSRNOT00000081244

RefSeq Acc Id:	XP_038964361 ⟸ XM_039108433
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038964362 ⟸ XM_039108434
- Peptide Label:	isoform X2
- UniProtKB:	F1LMX4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038964360 ⟸ XM_039108432
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038964363 ⟸ XM_039108435
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6A8V6 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSRNOP00000077659 ⟸ ENSRNOT00000098034

RefSeq Acc Id:

ENSRNOP00000096395 ⟸ ENSRNOT00000098186

RefSeq Acc Id:

ENSRNOP00000078829 ⟸ ENSRNOT00000105428

RefSeq Acc Id:

ENSRNOP00000078259 ⟸ ENSRNOT00000114533

RefSeq Acc Id:

ENSRNOP00000089783 ⟸ ENSRNOT00000118567

RefSeq Acc Id:

ENSRNOP00000095937 ⟸ ENSRNOT00000102583

RefSeq Acc Id:

ENSRNOP00000084095 ⟸ ENSRNOT00000097934

Protein Domains

PDEase

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q63421-F1-model_v2	AlphaFold	Q63421	1-768	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:68332	AgrOrtholog
BioCyc Gene	G2FUF-44723	BioCyc
Ensembl Genes	ENSRNOG00000012337	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000017531	ENTREZGENE
	ENSRNOP00000017531.8	UniProtKB/TrEMBL
	ENSRNOP00000075405.2	UniProtKB/TrEMBL
	ENSRNOP00000077659.1	UniProtKB/TrEMBL
	ENSRNOP00000078259.1	UniProtKB/TrEMBL
	ENSRNOP00000078829.1	UniProtKB/TrEMBL
	ENSRNOP00000084095	ENTREZGENE
	ENSRNOP00000084095.1	UniProtKB/TrEMBL
	ENSRNOP00000089783	ENTREZGENE
	ENSRNOP00000089783.1	UniProtKB/TrEMBL
	ENSRNOP00000095937.1	UniProtKB/TrEMBL
	ENSRNOP00000096395	ENTREZGENE
	ENSRNOP00000096395.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000017531	ENTREZGENE
	ENSRNOT00000017531.8	UniProtKB/TrEMBL
	ENSRNOT00000081244.2	UniProtKB/TrEMBL
	ENSRNOT00000097934	ENTREZGENE
	ENSRNOT00000097934.1	UniProtKB/TrEMBL
	ENSRNOT00000098034.1	UniProtKB/TrEMBL
	ENSRNOT00000098186	ENTREZGENE
	ENSRNOT00000098186.1	UniProtKB/TrEMBL
	ENSRNOT00000102583.1	UniProtKB/TrEMBL
	ENSRNOT00000105428.1	UniProtKB/TrEMBL
	ENSRNOT00000114533.1	UniProtKB/TrEMBL
	ENSRNOT00000118567	ENTREZGENE
	ENSRNOT00000118567.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.1300.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	HD/PDEase_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PDEase	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PDEase_catalytic_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PDEase_catalytic_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PDEase_CS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PDEase_N	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:81742	UniProtKB/Swiss-Prot
NCBI Gene	81742	ENTREZGENE
PANTHER	CALCIUM/CALMODULIN-DEPENDENT 3',5'-CYCLIC NUCLEOTIDE PHOSPHODIESTERASE 1C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	CYCLIC NUCLEOTIDE PHOSPHODIESTERASE	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	PDEase_I	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PDEase_I_N	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Pde1c	PhenoGen
PRINTS	PDIESTERASE1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	PDEASE_I_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PDEASE_I_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	HDc	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	HD-domain/PDEase-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0G2KAI1_RAT	UniProtKB/TrEMBL
	A0A8I5Y1F5_RAT	UniProtKB/TrEMBL
	A0A8I5ZKK2_RAT	UniProtKB/TrEMBL
	A0A8I5ZM70_RAT	UniProtKB/TrEMBL
	A0A8I6A8V6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AMU0_RAT	UniProtKB/TrEMBL
	A0A8I6AQQ1_RAT	UniProtKB/TrEMBL
	A0A8I6GBF9_RAT	UniProtKB/TrEMBL
	F1LMX4	ENTREZGENE, UniProtKB/TrEMBL
	PDE1C_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
	Q99J81_RAT	UniProtKB/TrEMBL
	Q99MN2_RAT	UniProtKB/TrEMBL
	Q99MN3_RAT	UniProtKB/TrEMBL
	Q99P54_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2002-06-10	Pde1c	phosphodiesterase 1C			Name updated	70584	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_expression	expressed at high levels in olfactory sensory neurons	68318

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - KEGG (archival)