Mrpl35 (mitochondrial ribosomal protein L35)

	Submit Data \| Help \| Video Tutorials \| News \| Publications \| Download \| REST API \| Citing RGD \| Contact
	Search RGD Grant Resources Citing RGD About Us Contact Us Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease Find Models new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive Pathways Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
	Advanced Search (OLGA)

Gene: Mrpl35 (mitochondrial ribosomal protein L35) Rattus norvegicus

Analyze

Symbol:

Mrpl35

Name:

mitochondrial ribosomal protein L35

RGD ID:

1307065

Description:

Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be part of mitochondrial large ribosomal subunit. Predicted to be active in mitochondrion. Orthologous to human MRPL35 (mitochondrial ribosomal protein L35); INTERACTS WITH bisphenol A; finasteride; flutamide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

39S ribosomal protein L35, mitochondrial; LOC297334

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MRPL35 (mitochondrial ribosomal protein L35)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Mrpl35 (mitochondrial ribosomal protein L35)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Mrpl35 (mitochondrial ribosomal protein L35)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	MRPL35 (mitochondrial ribosomal protein L35)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MRPL35 (mitochondrial ribosomal protein L35)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Mrpl35 (mitochondrial ribosomal protein L35)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MRPL35 (mitochondrial ribosomal protein L35)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	MRPL35 (mitochondrial ribosomal protein L35)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Mrpl35 (mitochondrial ribosomal protein L35)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	CYLD (CYLD lysine 63 deubiquitinase)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	MRPL35 (mitochondrial ribosomal protein L35)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Mus musculus (house mouse):	Mrpl35 (mitochondrial ribosomal protein L35)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	mrpl35 (mitochondrial ribosomal protein L35)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	mrpl-35	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	mRpL35	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	mrpl35	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	4	103,865,812 - 103,876,687 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	103,865,812 - 103,880,887 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	109,245,726 - 109,253,465 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	4	105,020,844 - 105,028,583 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	4	103,635,717 - 103,643,485 (-)	NCBI	Rnor_WKY
Rnor_6.0	4	99,738,792 - 99,749,665 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	99,738,792 - 99,746,560 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	164,516,933 - 164,524,701 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	105,103,325 - 105,111,093 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	105,348,639 - 105,355,553 (-)	NCBI
Celera	4	93,022,110 - 93,029,878 (-)	NCBI		Celera
Cytogenetic Map	4	q31	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

CD8 Deficiency, Familial (ISO)

genetic disease (ISO)

hereditary spastic paraplegia 31 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

1-chloro-2,4-dinitrobenzene (ISO)

17alpha-ethynylestradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2-methylcholine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4-(ethoxymethylene)-2-phenyloxazol-5-one (ISO)

4-hydroxyphenyl retinamide (ISO)

arsenite(3-) (ISO)

atrazine (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

chromium(6+) (ISO)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

dicrotophos (ISO)

ethyl methanesulfonate (ISO)

eugenol (ISO)

finasteride (EXP)

flutamide (EXP)

formaldehyde (ISO)

gentamycin (EXP)

isobutanol (ISO)

methyl methanesulfonate (ISO)

monosodium L-glutamate (ISO)

nickel sulfate (ISO)

oxaliplatin (EXP)

paracetamol (ISO)

sunitinib (ISO)

thapsigargin (ISO)

titanium dioxide (ISO)

topotecan (EXP)

trimellitic anhydride (ISO)

triptonide (ISO)

valproic acid (ISO)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

translation (IEA)

Cellular Component

mitochondrial large ribosomal subunit (ISO)

mitochondrion (IBA,ISO)

Molecular Function

protein binding (ISO)

structural constituent of ribosome (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:18614015	PMID:25278503	PMID:28892042

Genomics

Comparative Map Data

Mrpl35
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	4	103,865,812 - 103,876,687 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	103,865,812 - 103,880,887 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	109,245,726 - 109,253,465 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	4	105,020,844 - 105,028,583 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	4	103,635,717 - 103,643,485 (-)	NCBI	Rnor_WKY
Rnor_6.0	4	99,738,792 - 99,749,665 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	99,738,792 - 99,746,560 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	164,516,933 - 164,524,701 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	105,103,325 - 105,111,093 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	105,348,639 - 105,355,553 (-)	NCBI
Celera	4	93,022,110 - 93,029,878 (-)	NCBI		Celera
Cytogenetic Map	4	q31	NCBI

MRPL35
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	86,199,433 - 86,213,794 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	2	86,199,355 - 86,213,790 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	86,426,556 - 86,440,917 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	86,280,091 - 86,293,481 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	2	86,254,688 - 86,268,612 (+)	NCBI		Celera
Cytogenetic Map	2	p11.2	NCBI
HuRef	2	86,324,020 - 86,337,941 (+)	NCBI		HuRef
CHM1_1	2	86,356,001 - 86,369,922 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	86,201,527 - 86,224,659 (+)	NCBI		T2T-CHM13v2.0

Mrpl35
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	71,789,981 - 71,800,768 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	71,789,981 - 71,803,953 (-)	Ensembl		GRCm39 Ensembl
GRCm38	6	71,812,997 - 71,823,784 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	71,812,997 - 71,826,969 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	71,762,991 - 71,773,778 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	71,744,617 - 71,753,286 (-)	NCBI		MGSCv36	mm8
Celera	6	73,896,689 - 73,907,472 (-)	NCBI		Celera
Cytogenetic Map	6	C1	NCBI

Mrpl35
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955424	1,428,986 - 1,435,207 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955424	1,428,807 - 1,435,046 (-)	NCBI	ChiLan1.0	ChiLan1.0

MRPL35
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	2A	40,171,014 - 40,185,736 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	86,253,376 - 86,267,948 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	87,799,438 - 87,813,842 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	87,799,438 - 87,813,838 (+)	Ensembl	panpan1.1		panPan2

MRPL35
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	17	38,912,895 - 38,923,703 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	17	38,910,554 - 38,923,636 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	17	38,598,628 - 38,609,215 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	17	39,645,948 - 39,656,791 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	17	39,646,009 - 39,659,074 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	17	38,814,247 - 38,825,320 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	17	38,850,306 - 38,861,154 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	17	39,236,530 - 39,247,380 (-)	NCBI		UU_Cfam_GSD_1.0

Mrpl35
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	79,601,225 - 79,610,633 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936712	1,243,474 - 1,254,808 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936712	1,247,819 - 1,254,754 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MRPL35
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	58,560,680 - 58,575,081 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	58,559,523 - 58,575,110 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	61,248,751 - 61,262,104 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MRPL35
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Vero_WHO_p1.0	NW_023666045	91,531,051 - 91,546,278 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Mrpl35
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624749	17,050,262 - 17,057,943 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Mrpl35
32 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	390
Count of miRNA genes:	212
Interacting mature miRNAs:	261
Transcripts:	ENSRNOT00000012021
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2303168	Bp330	Blood pressure QTL 330	4.25	0.017	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	5214602	146446691	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	11320076	180699135	Rat
12798520	Anxrr55	Anxiety related response QTL 55	4.45	0.01	locomotor behavior trait (VT:0001392)	number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)	4	32583980	114627242	Rat
1358352	Srcrt3	Stress Responsive Cort QTL 3	2.29		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	38465774	146803430	Rat
1300139	Hrtrt6	Heart rate QTL 6	2.85		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	4	39524264	116179656	Rat
1576305	Emca6	Estrogen-induced mammary cancer QTL 6	5.8		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	4	44463720	155883716	Rat
1354612	Foco1	Food consumption QTL 1	8.87		eating behavior trait (VT:0001431)	food intake rate (CMO:0000427)	4	44463908	148090542	Rat
1354660	Salc1	Saline consumption QTL 1	11.26		drinking behavior trait (VT:0001422)	saline drink intake rate (CMO:0001627)	4	44463908	148090542	Rat
2312567	Glom19	Glomerulus QTL 19	1.9	0.006	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	4	45456990	146803430	Rat
1298082	Stresp4	Stress response QTL 4			blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	50119848	146803430	Rat
70200	Alc18	Alcohol consumption QTL 18	9.2		drinking behavior trait (VT:0001422)	ethanol intake volume to total fluid intake volume ratio (CMO:0001591)	4	56647873	149491524	Rat
1641833	Alc21	Alcohol consumption QTL 21	8.6	0.0001	drinking behavior trait (VT:0001422)	ethanol drink intake rate (CMO:0001407)	4	56698790	126192555	Rat
738009	Sach4	Saccharine consumption QTL 4	4.9	0.000016	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	4	59948935	154902892	Rat
738016	Alc16	Alcohol consumption QTL 16	3.6	0.00015	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	59948935	154902892	Rat
738031	Alc14	Alcohol consumption QTL 14	7.6	0.00003	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	59948935	154902892	Rat
1578657	Bss12	Bone structure and strength QTL 12	8.9		femur morphology trait (VT:0000559)	femoral neck cross-sectional area (CMO:0001697)	4	60220938	105220938	Rat
1578658	Bss13	Bone structure and strength QTL 13	8		femur strength trait (VT:0010010)	femoral neck polar moment of inertia (CMO:0001670)	4	60220938	105220938	Rat
2300179	Bmd50	Bone mineral density QTL 50	5.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	4	60928534	105928534	Rat
1549839	Bw52	Body weight QTL 52		0.0001	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	61697658	115089733	Rat
61418	Pia5	Pristane induced arthritis QTL 5	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	62277855	128289560	Rat
6478743	Anxrr40	Anxiety related response QTL 40		0.83076	defecation behavior trait (VT:0010462)	defecation rate (CMO:0000998)	4	62753847	107753847	Rat
6478772	Anxrr49	Anxiety related response QTL 49		0.15488	defecation behavior trait (VT:0010462)	defecation rate (CMO:0000998)	4	62753847	107753847	Rat
6478684	Anxrr30	Anxiety related response QTL 30		0.00087	defecation behavior trait (VT:0010462)	defecation rate (CMO:0000998)	4	62753847	107753847	Rat
631651	Bp124	Blood pressure QTL 124	3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	62879517	107879517	Rat
70192	BpQTLcluster5	Blood pressure QTL cluster 5	4.183		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	4	62933508	114921294	Rat
70192	BpQTLcluster5	Blood pressure QTL cluster 5	4.183		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	62933508	114921294	Rat
70192	BpQTLcluster5	Blood pressure QTL cluster 5	4.183		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	62933508	114921294	Rat
70192	BpQTLcluster5	Blood pressure QTL cluster 5	4.183		arterial blood pressure trait (VT:2000000)	percent change in mean arterial blood pressure (CMO:0002035)	4	62933508	114921294	Rat
70192	BpQTLcluster5	Blood pressure QTL cluster 5	4.183		arterial blood pressure trait (VT:2000000)	percent change in systolic blood pressure (CMO:0000747)	4	62933508	114921294	Rat
70192	BpQTLcluster5	Blood pressure QTL cluster 5	4.183		arterial blood pressure trait (VT:2000000)	absolute change in pulse pressure (CMO:0001882)	4	62933508	114921294	Rat
70192	BpQTLcluster5	Blood pressure QTL cluster 5	4.183		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	4	62933508	114921294	Rat
631674	Iddm14	Insulin dependent diabetes mellitus QTL 14			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	4	64528739	157573521	Rat
61330	Eau1	Experimental allergic uveoretinitis QTL 1		0.0003	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	4	70362013	132642728	Rat
634344	Hcar7	Hepatocarcinoma resistance QTL 7	7.8		liver integrity trait (VT:0010547)	liver tumorous lesion area to total liver area ratio (CMO:0001075)	4	70808386	115808386	Rat
634344	Hcar7	Hepatocarcinoma resistance QTL 7	7.8		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	4	70808386	115808386	Rat
631646	Stl4	Serum triglyceride level QTL 4	6.5	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	4	73169846	132642728	Rat
724522	Bp146	Blood pressure QTL 146	2.2	0.0021	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	73630210	118630210	Rat
2302051	Pia28	Pristane induced arthritis QTL 28	5.3	0.001	blood autoantibody amount (VT:0003725)	serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)	4	73630210	118630210	Rat
70167	Bw22	Body weight QTL 22	3.1		body mass (VT:0001259)	body weight (CMO:0000012)	4	76647384	117676292	Rat
1357342	Bw40	Body weight QTL 40		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	4	76647384	117676292	Rat
631662	Hcar2	Hepatocarcinoma resistance QTL 2	3.1	0.0003	liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	4	78878504	123878504	Rat
631556	Bp135	Blood pressure QTL 135		0.017	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	78881294	117676292	Rat
738015	Pia9	Pristane induced arthritis QTL 9	4.5	0.048	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	80694870	125694870	Rat
2306899	Bp338	Blood pressure QTL 338		0.071	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	81006124	120102625	Rat
1641919	Alc22	Alcohol consumption QTL 22		0.0005	drinking behavior trait (VT:0001422)	ethanol drink intake rate (CMO:0001407)	4	81192555	126192555	Rat
70177	Xhs1	X-ray hypersensitivity QTL 1	25.1		intestine integrity trait (VT:0010554)	post-insult time to onset of moribundity (CMO:0001896)	4	82798864	152731274	Rat
1576316	Ept5	Estrogen-induced pituitary tumorigenesis QTL 5	3.8		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	4	83428419	177635233	Rat
634334	Xhs3	X-ray hypersensitivity QTL 3	10		intestine integrity trait (VT:0010554)	post-insult time to onset of moribundity (CMO:0001896)	4	84728680	129854654	Rat
1582232	Gluco25	Glucose level QTL 25	3.6	0.0023	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	85253748	148090731	Rat
12798523	Anxrr56	Anxiety related response QTL 56	2.83	0.05	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	85253748	150276390	Rat
1358202	Gluco11	Glucose level QTL 11	2.4	0.02	adipocyte glucose uptake trait (VT:0004185)	absolute change in adipocyte glucose uptake (CMO:0000873)	4	85379421	167139601	Rat
61476	Aia3	Adjuvant induced arthritis QTL 3	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	86730991	131730991	Rat
1578662	Bss15	Bone structure and strength QTL 15	19.6		femur width (VT:1000666)	femoral neck width (CMO:0001695)	4	87327165	132327165	Rat
1578670	Bss14	Bone structure and strength QTL 14	16.4		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	4	87327165	132327165	Rat
1578655	Bmd11	Bone mineral density QTL 11	11		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	4	90850165	135850165	Rat
634335	Anxrr16	Anxiety related response QTL 16	7.22		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	4	93308457	167139447	Rat
631689	Scl4	Serum cholesterol level QTL 4	1.9	0.008	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	4	95174120	140174120	Rat
61434	Cia3	Collagen induced arthritis QTL 3	4.8		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	103194656	148194656	Rat
2317588	Eae27	Experimental allergic encephalomyelitis QTL 27			nervous system integrity trait (VT:0010566)	percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)	4	103194805	112478794	Rat

Markers in Region

RH128561

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	103,866,780 - 103,866,967 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	99,739,761 - 99,739,947	NCBI	Rnor6.0
Rnor_5.0	4	164,517,902 - 164,518,088	UniSTS	Rnor5.0
RGSC_v3.4	7	18,032,178 - 18,032,364	UniSTS	RGSC3.4
RGSC_v3.4	4	105,104,294 - 105,104,480	UniSTS	RGSC3.4
Celera	4	93,023,079 - 93,023,265	UniSTS
Cytogenetic Map	4	q33	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	43	57	41	19	41	8	11	74	35	41	11	8
Low
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106596	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006236635	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592536	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107314	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107316	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473957	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000148	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000012021 ⟹ ENSRNOP00000012021

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	103,865,812 - 103,880,394 (-)	Ensembl
Rnor_6.0 Ensembl	4	99,738,792 - 99,746,560 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000099067 ⟹ ENSRNOP00000084781

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	103,865,812 - 103,880,887 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000111149 ⟹ ENSRNOP00000076363

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	103,865,812 - 103,873,284 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000117127 ⟹ ENSRNOP00000095450

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	103,865,812 - 103,873,654 (-)	Ensembl

RefSeq Acc Id:

NM_001106596 ⟹ NP_001100066

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	103,865,812 - 103,873,582 (-)	NCBI
Rnor_6.0	4	99,738,792 - 99,746,560 (-)	NCBI
Rnor_5.0	4	164,516,933 - 164,524,701 (-)	NCBI
RGSC_v3.4	4	105,103,325 - 105,111,093 (-)	RGD
Celera	4	93,022,110 - 93,029,878 (-)	RGD

Sequence:

show sequence

ACGTTGCTTATTTTACTCTGCGGCCACCGTAGGCAGGCTGCAAGATGGCGGCCTCCATCTTCAT
GGGCGCCGTGAGAGCTGCCTCAGGAATATTACGTCCCCTCAATGTCTCGGTTTCGTCAACCTAT
CGGAACTGTGCCAGGAATGCCTGTCTTAGTTCTGCGCTGCGCACCATTCCTTTTAGACATATTC
AGACATCAGTTGTTTCCTCTGCTCCAAGGCTTGTCAAGTCTGTCGGACACCTGGCATATGGGCA
CACGGCATCAGTCCTTAATAGAGTGGCCACATTGGTTCCCAGTGTCTTGAAGCCTCCGGTCAGA
GCTCTGACGTACTGCAGTGCACGGAAAGGAAAGAGAAAGACAGTGAAGTCGGTTGTGCATCGCT
TCCTCCGACTTCACTCTGGCCTTTGGCTAAGGAGAAAGGCTGGCTATAAGAAAAAATTATGGAA
AAAGTCAACTGCAAGAAAGAAGCGCTTGAGGGAATTCGTGTTCTGCAATAAGACCCAGAGTAAA
CTCCTAGATAAAATGACGACATCTTTCTGGAAGAGGCGCAACTGGTACACTGGTGATCCCTACC
AGATGTACCATGATCGGACAAACCTGCGGGTATAGTTCAGAGCTCACACAAGTTCCCAACTCTG
GGATGTGGAGCTTTATGCACAGATGTCCTTGCAAAAGTGAGTGTGTGTTAAACTGTAAACTGTA
CCGGCTGATAGACAAACTTAGGTCACCACCATTGTGCATTAAACGTTCCCAGAGCTGGTCACTG
AACTCAAAGTTAAATTTATTGTGCATCATTTCAAAAAACTGCTAATGGCTTTTCTTATTCCTGG
GGTCTTGGATGAGGAAAAACATGAAAAGAAGCTAAAACAGTGGGCCTTTGCGTGGGGTTGAGAT
TGTACCCAGTTCTTTTACATGCTAAACAGACATCTTACATGCCTATTCCCAATATGATGCATGA
TGTATTTCAAAAATCAGTACTTTGGAACTTAGGAACCACCTTACAGTTTGATCTCCTACCTGAA
ACTCCCTAGCCCCAGGTTTGGGAAGGGCAGGAACTGGATGAAGCAGGAGATGGTGGGACTTTGC
CTCAGCTCTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCACCA
CATCACTCTCCTTAACCTTGGCTTTTGTTATGTATAGTTTATATTCCTCAGACTATCTTCAGCT
TGAACCTTTGAGGTTCTCTTTAACATTACAACCCTCAGCTCTTGTCATGTCTTCTCTCTTAATT
GCCAGGGGACCTAAGTGGGCCGGCTTACCTTTTCATCATAAGTCCTAATCCATGCTTCATGCCA
TATAGAGTTTGTCTGTCTGTGGCTCAATTACCCACTCAGCCCCTCTTAGTTGTGCCAGCAGGTT
CATGCCGAGTAAAAAGGTAGTTATAAGTGCTTAGAGGTGACATGGAGTGGCAGTGCACTTTCCT
CTTGTGTTCATGACAGTCATCACTAGTGCCTGGGTTCTTGTATTTATGACAGTCATCACTAATT
TTATTGTAACTGAATACTTTTCACAAAAGTAAATCACCTTTCCACATACCCTTCTTGAAACACA
CAGCTATACAATAAACTCCTTTTGCCTAATT

hide sequence

RefSeq Acc Id:

XM_006236635 ⟹ XP_006236697

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	103,865,814 - 103,873,543 (-)	NCBI
Rnor_6.0	4	99,738,794 - 99,746,517 (-)	NCBI
Rnor_5.0	4	164,516,933 - 164,524,701 (-)	NCBI

Sequence:

show sequence

GATGGCGGCCTCCATCTTCATGGGCGCCGTGAGAGCTGCCTCAGGAATATTACGTCCCCTCAAT
GTCTCGGTTTCGTCAACCTATCGGAACTGTGCCAGGAATGCCTGTCTTAGTTCTGCGCTGCGCA
CCATTCCTTTTAGACATATTCAGACATCAGTTGTTTCCTCTGCTCCAAGGCTTGTCAAGTCTGT
CGGACACCTGGCATATGGGCACACGGCATCAGTCCTTAATAGTTTTAAAACTGTACTTTAGAGT
GGCCACATTGGTTCCCAGTGTCTTGAAGCCTCCGGTCAGAGCTCTGACGTACTGCAGTGCACGG
AAAGGAAAGAGAAAGACAGTGAAGTCGGTTGTGCATCGCTTCCTCCGACTTCACTCTGGCCTTT
GGCTAAGGAGAAAGGCTGGCTATAAGAAAAAATTATGGAAAAAGTCAACTGCAAGAAAGAAGCG
CTTGAGGGAATTCGTGTTCTGCAATAAGACCCAGAGTAAACTCCTAGATAAAATGACGACATCT
TTCTGGAAGAGGCGCAACTGGTACACTGGTGATCCCTACCAGATGTACCATGATCGGACAAACC
TGCGGGTATAGTTCAGAGCTCACACAAGTTCCCAACTCTGGGATGTGGAGCTTTATGCACAGAT
GTCCTTGCAAAAGTGAGTGTGTGTTAAACTGTAAACTGTACCGGCTGATAGACAAACTTAGGTC
ACCACCATTGTGCATTAAACGTTCCCAGAGCTGGTCACTGAACTCAAAGTTAAATTTATTGTGC
ATCATTTCAAAAAACTGCTAATGGCTTTTCTTATTCCTGGGGTCTTGGATGAGGAAAAACATGA
AAAGAAGCTAAAACAGTGGGCCTTTGCGTGGGGTTGAGATTGTACCCAGTTCTTTTACATGCTA
AACAGACATCTTACATGCCTATTCCCAATATGATGCATGATGTATTTCAAAAATCAGTACTTTG
GAACTTAGGAACCACCTTACAGTTTGATCTCCTACCTGAAACTCCCTAGCCCCAGGTTTGGGAA
GGGCAGGAACTGGATGAAGCAGGAGATGGTGGGACTTTGCCTCAGCTCTAGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCACCACATCACTCTCCTTAACCTTGGCTT
TTGTTATGTATAGTTTATATTCCTCAGACTATCTTCAGCTTGAACCTTTGAGGTTCTCTTTAAC
ATTACAACCCTCAGCTCTTGTCATGTCTTCTCTCTTAATTGCCAGGGGACCTAAGTGGGCCGGC
TTACCTTTTCATCATAAGTCCTAATCCATGCTTCATGCCATATAGAGTTTGTCTGTCTGTGGCT
CAATTACCCACTCAGCCCCTCTTAGTTGTGCCAGCAGGTTCATGCCGAGTAAAAAGGTAGTTAT
AAGTGCTTAGAGGTGACATGGAGTGGCAGTGCACTTTCCTCTTGTGTTCATGACAGTCATCACT
AGTGCCTGGGTTCTTGTATTTATGACAGTCATCACTAATTTTATTGTAACTGAATACTTTTCAC
AAAAGTAAATCACCTTTCCACATACCCTTCTTGAAACACACAGCTATACAATAAACTCCTTTTG
CCTAA

hide sequence

RefSeq Acc Id:

XM_017592536 ⟹ XP_017448025

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	103,865,814 - 103,876,687 (-)	NCBI
Rnor_6.0	4	99,738,794 - 99,749,665 (-)	NCBI

Sequence:

show sequence

TGGTTCTGAGTCAGAGCCTTAGCTATGCAAGACTGGACCATGGGAGAAGCCAGATGTGGAGTAT
CCACCCACAAACACAGCATTCTTGTGGTGAGATGGGAAGCAGAGAAGAAGAGCCTGAAAGTTCT
TGGACCAAATAGCCTCGGATATGTAGCACAGCAGCAGACATCAAGAGGCCCTGCATCAACAAAG
AATATTACGTCCCCTCAATGTCTCGGTTTCGTCAACCTATCGGAACTGTGCCAGGAATGCCTGT
CTTAGTTCTGCGCTGCGCACCATTCCTTTTAGACATATTCAGACATCAGTTGTTTCCTCTGCTC
CAAGGCTTGTCAAGTCTGTCGGACACCTGGCATATGGGCACACGGCATCAGTCCTTAATAGTTT
TAAAACTGTACTTTAGAGTGGCCACATTGGTTCCCAGTGTCTTGAAGCCTCCGGTCAGAGCTCT
GACGTACTGCAGTGCACGGAAAGGAAAGAGAAAGACAGTGAAGTCGGTTGTGCATCGCTTCCTC
CGACTTCACTCTGGCCTTTGGCTAAGGAGAAAGGCTGGCTATAAGAAAAAATTATGGAAAAAGT
CAACTGCAAGAAAGAAGCGCTTGAGGGAATTCGTGTTCTGCAATAAGACCCAGAGTAAACTCCT
AGATAAAATGACGACATCTTTCTGGAAGAGGCGCAACTGGTACACTGGTGATCCCTACCAGATG
TACCATGATCGGACAAACCTGCGGGTATAGTTCAGAGCTCACACAAGTTCCCAACTCTGGGATG
TGGAGCTTTATGCACAGATGTCCTTGCAAAAGTGAGTGTGTGTTAAACTGTAAACTGTACCGGC
TGATAGACAAACTTAGGTCACCACCATTGTGCATTAAACGTTCCCAGAGCTGGTCACTGAACTC
AAAGTTAAATTTATTGTGCATCATTTCAAAAAACTGCTAATGGCTTTTCTTATTCCTGGGGTCT
TGGATGAGGAAAAACATGAAAAGAAGCTAAAACAGTGGGCCTTTGCGTGGGGTTGAGATTGTAC
CCAGTTCTTTTACATGCTAAACAGACATCTTACATGCCTATTCCCAATATGATGCATGATGTAT
TTCAAAAATCAGTACTTTGGAACTTAGGAACCACCTTACAGTTTGATCTCCTACCTGAAACTCC
CTAGCCCCAGGTTTGGGAAGGGCAGGAACTGGATGAAGCAGGAGATGGTGGGACTTTGCCTCAG
CTCTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCACCACATCA
CTCTCCTTAACCTTGGCTTTTGTTATGTATAGTTTATATTCCTCAGACTATCTTCAGCTTGAAC
CTTTGAGGTTCTCTTTAACATTACAACCCTCAGCTCTTGTCATGTCTTCTCTCTTAATTGCCAG
GGGACCTAAGTGGGCCGGCTTACCTTTTCATCATAAGTCCTAATCCATGCTTCATGCCATATAG
AGTTTGTCTGTCTGTGGCTCAATTACCCACTCAGCCCCTCTTAGTTGTGCCAGCAGGTTCATGC
CGAGTAAAAAGGTAGTTATAAGTGCTTAGAGGTGACATGGAGTGGCAGTGCACTTTCCTCTTGT
GTTCATGACAGTCATCACTAGTGCCTGGGTTCTTGTATTTATGACAGTCATCACTAATTTTATT
GTAACTGAATACTTTTCACAAAAGTAAATCACCTTTCCACATACCCTTCTTGAAACACACAGCT
ATACAATAAACTCCTTTTGCCTAA

hide sequence

RefSeq Acc Id:

XM_039107314 ⟹ XP_038963242

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	103,865,814 - 103,873,421 (-)	NCBI

RefSeq Acc Id:

XM_039107316 ⟹ XP_038963244

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	103,865,814 - 103,873,437 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100066	(Get FASTA)	NCBI Sequence Viewer
	XP_006236697	(Get FASTA)	NCBI Sequence Viewer
	XP_017448025	(Get FASTA)	NCBI Sequence Viewer
	XP_038963242	(Get FASTA)	NCBI Sequence Viewer
	XP_038963244	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL91006	(Get FASTA)	NCBI Sequence Viewer
	EDL91007	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_001100066 ⟸ NM_001106596
- UniProtKB:	D3ZE10 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAASIFMGAVRAASGILRPLNVSVSSTYRNCARNACLSSALRTIPFRHIQTSVVSSAPRLVKSV GHLAYGHTASVLNRVATLVPSVLKPPVRALTYCSARKGKRKTVKSVVHRFLRLHSGLWLRRKAG YKKKLWKKSTARKKRLREFVFCNKTQSKLLDKMTTSFWKRRNWYTGDPYQMYHDRTNLRV hide sequence

RefSeq Acc Id:	XP_006236697 ⟸ XM_006236635
- Peptide Label:	isoform X1
- Sequence:	show sequence MSRFRQPIGTVPGMPVLVLRCAPFLLDIFRHQLFPLLQGLSSLSDTWHMGTRHQSLIVLKLYFR VATLVPSVLKPPVRALTYCSARKGKRKTVKSVVHRFLRLHSGLWLRRKAGYKKKLWKKSTARKK RLREFVFCNKTQSKLLDKMTTSFWKRRNWYTGDPYQMYHDRTNLRV hide sequence

RefSeq Acc Id:	XP_017448025 ⟸ XM_017592536
- Peptide Label:	isoform X1
- Sequence:	show sequence MSRFRQPIGTVPGMPVLVLRCAPFLLDIFRHQLFPLLQGLSSLSDTWHMGTRHQSLIVLKLYFR VATLVPSVLKPPVRALTYCSARKGKRKTVKSVVHRFLRLHSGLWLRRKAGYKKKLWKKSTARKK RLREFVFCNKTQSKLLDKMTTSFWKRRNWYTGDPYQMYHDRTNLRV hide sequence

RefSeq Acc Id:

ENSRNOP00000012021 ⟸ ENSRNOT00000012021

RefSeq Acc Id:	XP_038963244 ⟸ XM_039107316
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038963242 ⟸ XM_039107314
- Peptide Label:	isoform X1

RefSeq Acc Id:

ENSRNOP00000084781 ⟸ ENSRNOT00000099067

RefSeq Acc Id:

ENSRNOP00000076363 ⟸ ENSRNOT00000111149

RefSeq Acc Id:

ENSRNOP00000095450 ⟸ ENSRNOT00000117127

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZE10-F1-model_v2	AlphaFold	D3ZE10	1-188	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693117

Promoter ID:

EPDNEW_R3642

Type:

multiple initiation site

Name:

Mrpl35_1

Description:

mitochondrial ribosomal protein L35

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	99,746,521 - 99,746,581	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307065	AgrOrtholog
BioCyc Gene	G2FUF-44177	BioCyc
Ensembl Genes	ENSRNOG00000008546	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000012021.6	UniProtKB/TrEMBL
	ENSRNOP00000076363.1	UniProtKB/TrEMBL
	ENSRNOP00000084781.1	UniProtKB/TrEMBL
	ENSRNOP00000095450	ENTREZGENE
	ENSRNOP00000095450.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000012021.6	UniProtKB/TrEMBL
	ENSRNOT00000099067.1	UniProtKB/TrEMBL
	ENSRNOT00000111149.1	UniProtKB/TrEMBL
	ENSRNOT00000117127	ENTREZGENE
	ENSRNOT00000117127.1	UniProtKB/TrEMBL
Gene3D-CATH	4.10.410.60	UniProtKB/TrEMBL
InterPro	Ribosomal-L35_mit	UniProtKB/TrEMBL
	Ribosomal_L35	UniProtKB/TrEMBL
	Ribosomal_L35_sf	UniProtKB/TrEMBL
KEGG Report	rno:297334	UniProtKB/TrEMBL
NCBI Gene	297334	ENTREZGENE
PANTHER	39S RIBOSOMAL PROTEIN L35, MITOCHONDRIAL	UniProtKB/TrEMBL
	Ribosomal-L35_mit	UniProtKB/TrEMBL
Pfam	Ribosomal_L35p	UniProtKB/TrEMBL
PhenoGen	Mrpl35	PhenoGen
Superfamily-SCOP	SSF143034	UniProtKB/TrEMBL
UniProt	A0A8I5Y039_RAT	UniProtKB/TrEMBL
	A0A8I5ZYT3_RAT	UniProtKB/TrEMBL
	A0A8I6GL56_RAT	UniProtKB/TrEMBL
	D3ZE10	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Mrpl35	mitochondrial ribosomal protein L35	Mrpl35_predicted	mitochondrial ribosomal protein L35 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Mrpl35_predicted	mitochondrial ribosomal protein L35 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar