LRRTM1 (leucine rich repeat transmembrane neuronal 1) - Rat Genome Database

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Gene: LRRTM1 (leucine rich repeat transmembrane neuronal 1) Rattus norvegicus
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Symbol: LRRTM1
Name: leucine rich repeat transmembrane neuronal 1
RGD ID: 1585921
Description: Involved in regulation of postsynaptic density assembly and regulation of presynapse assembly. Acts upstream of or within synapse organization. Located in excitatory synapse. Is active in glutamatergic synapse and postsynaptic membrane. Orthologous to human LRRTM1 (leucine rich repeat transmembrane neuronal 1); INTERACTS WITH 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: leucine-rich repeat transmembrane neuronal protein 1; LOC679668; similar to leucine-rich repeat transmembrane neuronal 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84111,246,213 - 111,295,638 (+)NCBIGRCr8
mRatBN7.24109,701,815 - 109,718,924 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4109,701,815 - 109,717,184 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4115,107,415 - 115,122,780 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04110,882,531 - 110,897,892 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04109,502,694 - 109,518,062 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04108,300,927 - 108,316,373 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4108,301,129 - 108,316,373 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04173,006,611 - 173,022,018 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44111,166,760 - 111,182,344 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera498,746,001 - 98,761,096 (+)NCBICelera
Cytogenetic Map4q33NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. An unbiased expression screen for synaptogenic proteins identifies the LRRTM protein family as synaptic organizers. Linhoff MW, etal., Neuron. 2009 Mar 12;61(5):734-49. doi: 10.1016/j.neuron.2009.01.017.
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. A Modular Organization of LRR Protein-Mediated Synaptic Adhesion Defines Synapse Identity. Schroeder A, etal., Neuron. 2018 Jul 25;99(2):329-344.e7. doi: 10.1016/j.neuron.2018.06.026. Epub 2018 Jul 5.
Additional References at PubMed
PMID:17667961   PMID:21788371   PMID:21818371   PMID:23089646   PMID:23931994   PMID:24613359   PMID:27565350   PMID:35699802  


Genomics

Comparative Map Data
LRRTM1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84111,246,213 - 111,295,638 (+)NCBIGRCr8
mRatBN7.24109,701,815 - 109,718,924 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4109,701,815 - 109,717,184 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4115,107,415 - 115,122,780 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04110,882,531 - 110,897,892 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04109,502,694 - 109,518,062 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04108,300,927 - 108,316,373 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4108,301,129 - 108,316,373 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04173,006,611 - 173,022,018 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44111,166,760 - 111,182,344 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera498,746,001 - 98,761,096 (+)NCBICelera
Cytogenetic Map4q33NCBI
LRRTM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38280,288,356 - 80,304,752 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl280,288,351 - 80,304,752 (-)EnsemblGRCh38hg38GRCh38
GRCh37280,529,003 - 80,531,877 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36280,382,514 - 80,384,998 (-)NCBINCBI36Build 36hg18NCBI36
Build 34280,436,963 - 80,443,510NCBI
Celera280,357,641 - 80,360,125 (-)NCBICelera
Cytogenetic Map2p12NCBI
HuRef280,264,234 - 80,266,718 (-)NCBIHuRef
CHM1_1280,458,756 - 80,461,240 (-)NCBICHM1_1
T2T-CHM13v2.0280,302,025 - 80,304,899 (-)NCBIT2T-CHM13v2.0
Lrrtm1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39677,192,762 - 77,236,898 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl677,219,672 - 77,234,774 (+)EnsemblGRCm39 Ensembl
GRCm38677,229,210 - 77,259,915 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl677,242,689 - 77,257,791 (+)EnsemblGRCm38mm10GRCm38
MGSCv37677,192,711 - 77,195,511 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36677,172,238 - 77,187,272 (+)NCBIMGSCv36mm8
Celera679,273,556 - 79,276,356 (+)NCBICelera
Cytogenetic Map6C3NCBI
cM Map633.89NCBI
Lrrtm1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554246,322,284 - 6,337,550 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554246,322,284 - 6,337,550 (+)NCBIChiLan1.0ChiLan1.0
LRRTM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21246,047,115 - 46,063,509 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A46,050,330 - 46,066,263 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A80,376,582 - 80,392,899 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A81,940,008 - 81,956,386 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A81,953,891 - 81,955,459 (-)Ensemblpanpan1.1panPan2
LRRTM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11743,833,906 - 43,842,911 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1743,834,562 - 43,836,130 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1743,529,484 - 43,532,366 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01744,646,891 - 44,649,819 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1744,646,870 - 44,649,817 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11743,729,863 - 43,732,734 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01743,765,294 - 43,768,169 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01744,269,225 - 44,272,140 (+)NCBIUU_Cfam_GSD_1.0
Lrrtm1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244062924,806,393 - 4,822,627 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365565,928,622 - 5,931,499 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365565,915,265 - 5,934,004 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LRRTM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl363,587,499 - 63,590,405 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1363,585,784 - 63,590,368 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2366,675,615 - 66,678,394 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LRRTM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11426,926,681 - 26,929,347 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1426,927,470 - 26,929,038 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604585,377,470 - 85,380,341 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lrrtm1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474922,695,241 - 22,698,604 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474922,695,726 - 22,698,161 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in LRRTM1
76 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:419
Count of miRNA genes:233
Interacting mature miRNAs:273
Transcripts:ENSRNOT00000007993
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)432583980114627242Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
1300139Hrtrt6Heart rate QTL 62.85heart pumping trait (VT:2000009)heart rate (CMO:0000002)439524264116179656Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)444463720155883716Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)444463908148090542Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)444463908148090542Rat
2312567Glom19Glomerulus QTL 191.90.006kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)445456990146803430Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)450119848146803430Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)456647873149491524Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)456698790126192555Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)459948935154902892Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
1549839Bw52Body weight QTL 520.0001body mass (VT:0001259)body weight gain (CMO:0000420)461697658115089733Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)462277855128289560Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)percent change in mean arterial blood pressure (CMO:0002035)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)percent change in systolic blood pressure (CMO:0000747)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)absolute change in pulse pressure (CMO:0001882)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)462933508114921294Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)464528739157573521Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)470362013132642728Rat
634344Hcar7Hepatocarcinoma resistance QTL 77.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)470808386115808386Rat
634344Hcar7Hepatocarcinoma resistance QTL 77.8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)470808386115808386Rat
631646Stl4Serum triglyceride level QTL 46.50.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)473169846132642728Rat
724522Bp146Blood pressure QTL 1462.20.0021arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)473630210118630210Rat
2302051Pia28Pristane induced arthritis QTL 285.30.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)473630210118630210Rat
70167Bw22Body weight QTL 223.1body mass (VT:0001259)body weight (CMO:0000012)476647384117676292Rat
1357342Bw40Body weight QTL 400.001body mass (VT:0001259)body weight (CMO:0000012)476647384117676292Rat
631662Hcar2Hepatocarcinoma resistance QTL 23.10.0003liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)478878504123878504Rat
631556Bp135Blood pressure QTL 1350.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)478881294117676292Rat
738015Pia9Pristane induced arthritis QTL 94.50.048joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)480694870125694870Rat
2306899Bp338Blood pressure QTL 3380.071arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)481006124120102625Rat
1641919Alc22Alcohol consumption QTL 220.0005drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)481192555126192555Rat
70177Xhs1X-ray hypersensitivity QTL 125.1intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)482798864152731274Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)483428419177635233Rat
634334Xhs3X-ray hypersensitivity QTL 310intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)484728680129854654Rat
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)485253748148090731Rat
12798523Anxrr56Anxiety related response QTL 562.830.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)485253748150276390Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)485379421167139601Rat
61476Aia3Adjuvant induced arthritis QTL 33.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)486730991131730991Rat
1578662Bss15Bone structure and strength QTL 1519.6femur width (VT:1000666)femoral neck width (CMO:0001695)487327165132327165Rat
1578670Bss14Bone structure and strength QTL 1416.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)487327165132327165Rat
1578655Bmd11Bone mineral density QTL 1111femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)490850165135850165Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)493308457167139447Rat
631689Scl4Serum cholesterol level QTL 41.90.008blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)495174120140174120Rat
61434Cia3Collagen induced arthritis QTL 34.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4103194656148194656Rat
2317588Eae27Experimental allergic encephalomyelitis QTL 27nervous system integrity trait (VT:0010566)percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)4103194805112478794Rat
2302049Pia32Pristane induced arthritis QTL 325.10.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)4105789505150789505Rat
731165Uae21Urinary albumin excretion QTL 212.40.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)4106649412151649412Rat
61406Scwia1Streptococcal cell wall induced arthritis QTL 12.3joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)4106805662151805662Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 54
Low 8 20 18 29 3
Below cutoff 3 17 22 7 11 7 5 5 4 11 7 5

Sequence


RefSeq Acc Id: ENSRNOT00000007993   ⟹   ENSRNOP00000007993
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4109,701,815 - 109,717,184 (+)Ensembl
Rnor_6.0 Ensembl4108,301,129 - 108,316,373 (+)Ensembl
RefSeq Acc Id: NM_001395622   ⟹   NP_001382551
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84111,259,859 - 111,262,680 (+)NCBI
mRatBN7.24109,701,815 - 109,704,636 (+)NCBI
RefSeq Acc Id: NR_172650
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84111,259,859 - 111,275,229 (+)NCBI
mRatBN7.24109,701,815 - 109,717,184 (+)NCBI
RefSeq Acc Id: XM_006236700   ⟹   XP_006236762
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84111,246,213 - 111,262,682 (+)NCBI
mRatBN7.24109,702,222 - 109,704,636 (+)NCBI
Rnor_6.04108,300,927 - 108,303,795 (+)NCBI
Rnor_5.04173,006,611 - 173,022,018 (+)NCBI
Sequence:
RefSeq Acc Id: XR_005503313
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84111,246,213 - 111,295,638 (+)NCBI
mRatBN7.24109,701,815 - 109,718,924 (+)NCBI
RefSeq Acc Id: XP_006236762   ⟸   XM_006236700
- Peptide Label: isoform X1
- UniProtKB: D4A6D8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000007993   ⟸   ENSRNOT00000007993
RefSeq Acc Id: NP_001382551   ⟸   NM_001395622
- Peptide Label: precursor
- UniProtKB: D4A6D8 (UniProtKB/Swiss-Prot)
Protein Domains
LRRCT   LRRNT

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A6D8-F1-model_v2 AlphaFold D4A6D8 1-523 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1585921 AgrOrtholog
BioCyc Gene G2FUF-44091 BioCyc
Ensembl Genes ENSRNOG00000006093 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOG00055020514 UniProtKB/Swiss-Prot
  ENSRNOG00060002258 UniProtKB/Swiss-Prot
  ENSRNOG00065005413 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000007993 ENTREZGENE
  ENSRNOT00000007993.6 UniProtKB/Swiss-Prot
  ENSRNOT00055035003 UniProtKB/Swiss-Prot
  ENSRNOT00060003536 UniProtKB/Swiss-Prot
  ENSRNOT00065008014 UniProtKB/Swiss-Prot
Gene3D-CATH 3.80.10.10 UniProtKB/Swiss-Prot
InterPro Leu-rich_rpt UniProtKB/Swiss-Prot
  Leu-rich_rpt_typical-subtyp UniProtKB/Swiss-Prot
  LRR_dom_sf UniProtKB/Swiss-Prot
KEGG Report rno:679668 UniProtKB/Swiss-Prot
NCBI Gene 679668 ENTREZGENE
PANTHER LEUCINE-RICH REPEAT TRANSMEMBRANE NEURONAL PROTEIN 1 UniProtKB/Swiss-Prot
  SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN UniProtKB/Swiss-Prot
Pfam LRR_8 UniProtKB/Swiss-Prot
PhenoGen LRRTM1 PhenoGen
PROSITE LRR UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000006093 RatGTEx
  ENSRNOG00055020514 RatGTEx
  ENSRNOG00060002258 RatGTEx
  ENSRNOG00065005413 RatGTEx
SMART LRR_TYP UniProtKB/Swiss-Prot
Superfamily-SCOP L domain-like UniProtKB/Swiss-Prot
UniProt D4A6D8 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-12-02 LRRTM1  leucine rich repeat transmembrane neuronal 1   LOC679668  similar to leucine-rich repeat transmembrane neuronal 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC679668  similar to leucine-rich repeat transmembrane neuronal 1  LOC684054  similar to leucine-rich repeat transmembrane neuronal 1  Data merged from RGD:1595192 1643240 APPROVED
2006-11-20 LOC684054  similar to leucine-rich repeat transmembrane neuronal 1      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC679668  similar to leucine-rich repeat transmembrane neuronal 1      Symbol and Name status set to provisional 70820 PROVISIONAL