Lrrtm1 (leucine rich repeat transmembrane neuronal 1) - Rat Genome Database

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Gene: Lrrtm1 (leucine rich repeat transmembrane neuronal 1) Chinchilla lanigera
Analyze
Symbol: Lrrtm1
Name: leucine rich repeat transmembrane neuronal 1
RGD ID: 8791133
Description: INVOLVED IN establishment of localization in cell (ortholog); exploration behavior (ortholog); locomotory behavior (ortholog); ASSOCIATED WITH Complex Cortical Dysplasia with Other Brain Malformations 9 (ortholog); genetic disease (ortholog); schizophrenia (ortholog); FOUND IN axon (ortholog); cell surface (ortholog); endoplasmic reticulum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: leucine-rich repeat transmembrane neuronal protein 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554246,322,284 - 6,337,550 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554246,322,284 - 6,337,550 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Lrrtm1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554246,322,284 - 6,337,550 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554246,322,284 - 6,337,550 (+)NCBIChiLan1.0ChiLan1.0
LRRTM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38280,288,356 - 80,304,752 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl280,288,351 - 80,304,752 (-)EnsemblGRCh38hg38GRCh38
GRCh37280,529,003 - 80,531,877 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36280,382,514 - 80,384,998 (-)NCBINCBI36Build 36hg18NCBI36
Build 34280,436,963 - 80,443,510NCBI
Celera280,357,641 - 80,360,125 (-)NCBICelera
Cytogenetic Map2p12NCBI
HuRef280,264,234 - 80,266,718 (-)NCBIHuRef
CHM1_1280,458,756 - 80,461,240 (-)NCBICHM1_1
T2T-CHM13v2.0280,302,025 - 80,304,899 (-)NCBIT2T-CHM13v2.0
Lrrtm1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39677,192,762 - 77,236,898 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl677,219,672 - 77,234,774 (+)EnsemblGRCm39 Ensembl
GRCm38677,229,210 - 77,259,915 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl677,242,689 - 77,257,791 (+)EnsemblGRCm38mm10GRCm38
MGSCv37677,192,711 - 77,195,511 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36677,172,238 - 77,187,272 (+)NCBIMGSCv36mm8
Celera679,273,556 - 79,276,356 (+)NCBICelera
Cytogenetic Map6C3NCBI
cM Map633.89NCBI
LRRTM1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84111,246,213 - 111,295,638 (+)NCBIGRCr8
mRatBN7.24109,701,815 - 109,718,924 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4109,701,815 - 109,717,184 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4115,107,415 - 115,122,780 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04110,882,531 - 110,897,892 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04109,502,694 - 109,518,062 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04108,300,927 - 108,316,373 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4108,301,129 - 108,316,373 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04173,006,611 - 173,022,018 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44111,166,760 - 111,182,344 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera498,746,001 - 98,761,096 (+)NCBICelera
Cytogenetic Map4q33NCBI
LRRTM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21246,047,115 - 46,063,509 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A46,050,330 - 46,066,263 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A80,376,582 - 80,392,899 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A81,940,008 - 81,956,386 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A81,953,891 - 81,955,459 (-)Ensemblpanpan1.1panPan2
LRRTM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11743,833,906 - 43,842,911 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1743,834,562 - 43,836,130 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1743,529,484 - 43,532,366 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01744,646,891 - 44,649,819 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1744,646,870 - 44,649,817 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11743,729,863 - 43,732,734 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01743,765,294 - 43,768,169 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01744,269,225 - 44,272,140 (+)NCBIUU_Cfam_GSD_1.0
Lrrtm1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244062924,806,393 - 4,822,627 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365565,928,622 - 5,931,499 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365565,915,265 - 5,934,004 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LRRTM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl363,587,499 - 63,590,405 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1363,585,784 - 63,590,368 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2366,675,615 - 66,678,394 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LRRTM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11426,926,681 - 26,929,347 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1426,927,470 - 26,929,038 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604585,377,470 - 85,380,341 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lrrtm1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474922,695,241 - 22,698,604 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474922,695,726 - 22,698,161 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000007769   ⟹   ENSCLAP00000007651
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554246,322,284 - 6,337,550 (+)Ensembl
RefSeq Acc Id: XM_013514747   ⟹   XP_013370201
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554246,322,284 - 6,337,550 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013370201 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000007651
  ENSCLAP00000007651.1
Reference Protein Sequences
RefSeq Acc Id: XP_013370201   ⟸   XM_013514747
- UniProtKB: A0A8C2V3L5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000007651   ⟸   ENSCLAT00000007769


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000005364 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000007769 ENTREZGENE
  ENSCLAT00000007769.1 UniProtKB/TrEMBL
Gene3D-CATH 3.80.10.10 UniProtKB/TrEMBL
InterPro Leu-rich_rpt UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
NCBI Gene Lrrtm1 ENTREZGENE
PANTHER LEUCINE-RICH REPEAT TRANSMEMBRANE NEURONAL PROTEIN 1 UniProtKB/TrEMBL
  SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN UniProtKB/TrEMBL
Pfam LRR_8 UniProtKB/TrEMBL
PROSITE LRR UniProtKB/TrEMBL
SMART LRR_TYP UniProtKB/TrEMBL
Superfamily-SCOP L domain-like UniProtKB/TrEMBL
UniProt A0A8C2V3L5 ENTREZGENE, UniProtKB/TrEMBL