LRRTM1 (leucine rich repeat transmembrane neuronal 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: LRRTM1 (leucine rich repeat transmembrane neuronal 1) Canis lupus familiaris
Analyze
Symbol: LRRTM1
Name: leucine rich repeat transmembrane neuronal 1
RGD ID: 12092018
Description: INVOLVED IN exploration behavior (ortholog); locomotory behavior (ortholog); long-term synaptic potentiation (ortholog); FOUND IN axon (ortholog); cell surface (ortholog); glutamatergic synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: leucine-rich repeat transmembrane neuronal protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11743,833,906 - 43,842,911 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1743,834,562 - 43,836,130 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1743,529,484 - 43,532,366 (+)NCBI
ROS_Cfam_1.01744,646,891 - 44,649,819 (+)NCBI
UMICH_Zoey_3.11743,729,863 - 43,732,734 (+)NCBI
UNSW_CanFamBas_1.01743,765,294 - 43,768,169 (+)NCBI
UU_Cfam_GSD_1.01744,269,225 - 44,272,140 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
LRRTM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11743,833,906 - 43,842,911 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1743,834,562 - 43,836,130 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1743,529,484 - 43,532,366 (+)NCBI
ROS_Cfam_1.01744,646,891 - 44,649,819 (+)NCBI
UMICH_Zoey_3.11743,729,863 - 43,732,734 (+)NCBI
UNSW_CanFamBas_1.01743,765,294 - 43,768,169 (+)NCBI
UU_Cfam_GSD_1.01744,269,225 - 44,272,140 (+)NCBI
LRRTM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl280,288,351 - 80,304,752 (-)EnsemblGRCh38hg38GRCh38
GRCh38280,301,878 - 80,304,752 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37280,529,003 - 80,531,877 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36280,382,514 - 80,384,998 (-)NCBINCBI36hg18NCBI36
Build 34280,436,963 - 80,443,510NCBI
Celera280,357,641 - 80,360,125 (-)NCBI
Cytogenetic Map2p12NCBI
HuRef280,264,234 - 80,266,718 (-)NCBIHuRef
CHM1_1280,458,756 - 80,461,240 (-)NCBICHM1_1
Lrrtm1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39677,192,762 - 77,236,898 (+)NCBIGRCm39mm39
GRCm39 Ensembl677,219,672 - 77,234,774 (+)Ensembl
GRCm38677,229,210 - 77,259,915 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl677,242,689 - 77,257,791 (+)EnsemblGRCm38mm10GRCm38
MGSCv37677,192,711 - 77,195,511 (+)NCBIGRCm37mm9NCBIm37
MGSCv36677,172,238 - 77,187,272 (+)NCBImm8
Celera679,273,556 - 79,276,356 (+)NCBICelera
Cytogenetic Map6C3NCBI
LRRTM1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24109,701,815 - 109,718,924 (+)NCBI
Rnor_6.0 Ensembl4108,301,129 - 108,316,373 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.04108,300,927 - 108,316,373 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04173,006,611 - 173,022,018 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44111,166,760 - 111,182,344 (+)NCBIRGSC3.4rn4RGSC3.4
Celera498,746,001 - 98,761,096 (+)NCBICelera
Cytogenetic Map4q33NCBI
Lrrtm1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554246,322,284 - 6,337,550 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554246,322,284 - 6,337,550 (+)NCBIChiLan1.0ChiLan1.0
LRRTM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A81,940,008 - 81,956,386 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A81,953,891 - 81,955,459 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A80,376,582 - 80,392,899 (-)NCBIMhudiblu_PPA_v0panPan3
Lrrtm1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244062924,806,393 - 4,822,627 (+)NCBI
SpeTri2.0NW_0049365565,915,265 - 5,934,004 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LRRTM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl363,587,499 - 63,590,407 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1363,585,784 - 63,590,368 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2366,675,615 - 66,678,394 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LRRTM1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11426,926,681 - 26,929,347 (+)NCBI
ChlSab1.1 Ensembl1426,927,470 - 26,929,038 (+)Ensembl
Lrrtm1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474922,695,726 - 22,698,161 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 6 5
Low 5 6 5 2
Below cutoff 5 5 8 2 2 6 3 1 8 3 4

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005630498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014120229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038453125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038453126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038499024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038499025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038499026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038499027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038499028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038561611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038561612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038561613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038561614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038561615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038625651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038625652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038625653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038625654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038625655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038691577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038691578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038691579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038691581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038691582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_540204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000012896   ⟹   ENSCAFP00000011938
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1743,834,562 - 43,836,130 (+)Ensembl
RefSeq Acc Id: XM_005630498   ⟹   XP_005630555
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11743,833,906 - 43,842,911 (+)NCBI
Dog10K_Boxer_Tasha1743,529,484 - 43,532,366 (+)NCBI
Sequence:
RefSeq Acc Id: XM_014120229   ⟹   XP_013975704
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11743,834,252 - 43,842,911 (+)NCBI
Dog10K_Boxer_Tasha1743,530,036 - 43,532,366 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038453125   ⟹   XP_038309053
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1743,529,484 - 43,532,366 (+)NCBI
RefSeq Acc Id: XM_038453126   ⟹   XP_038309054
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1743,529,484 - 43,532,366 (+)NCBI
RefSeq Acc Id: XM_038499024   ⟹   XP_038354952
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11743,729,863 - 43,732,734 (+)NCBI
RefSeq Acc Id: XM_038499025   ⟹   XP_038354953
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11743,729,864 - 43,732,734 (+)NCBI
RefSeq Acc Id: XM_038499026   ⟹   XP_038354954
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11743,729,863 - 43,732,734 (+)NCBI
RefSeq Acc Id: XM_038499027   ⟹   XP_038354955
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11743,730,405 - 43,732,734 (+)NCBI
RefSeq Acc Id: XM_038499028   ⟹   XP_038354956
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11743,729,863 - 43,732,734 (+)NCBI
RefSeq Acc Id: XM_038561611   ⟹   XP_038417539
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01744,269,225 - 44,272,140 (+)NCBI
RefSeq Acc Id: XM_038561612   ⟹   XP_038417540
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01744,269,226 - 44,272,140 (+)NCBI
RefSeq Acc Id: XM_038561613   ⟹   XP_038417541
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01744,269,226 - 44,272,140 (+)NCBI
RefSeq Acc Id: XM_038561614   ⟹   XP_038417542
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01744,269,811 - 44,272,140 (+)NCBI
RefSeq Acc Id: XM_038561615   ⟹   XP_038417543
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01744,269,225 - 44,272,140 (+)NCBI
RefSeq Acc Id: XM_038625651   ⟹   XP_038481579
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01743,765,294 - 43,768,169 (+)NCBI
RefSeq Acc Id: XM_038625652   ⟹   XP_038481580
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01743,765,294 - 43,768,169 (+)NCBI
RefSeq Acc Id: XM_038625653   ⟹   XP_038481581
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01743,765,294 - 43,768,169 (+)NCBI
RefSeq Acc Id: XM_038625654   ⟹   XP_038481582
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01743,765,838 - 43,768,169 (+)NCBI
RefSeq Acc Id: XM_038625655   ⟹   XP_038481583
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01743,765,294 - 43,768,169 (+)NCBI
RefSeq Acc Id: XM_038691577   ⟹   XP_038547505
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01744,646,891 - 44,649,819 (+)NCBI
RefSeq Acc Id: XM_038691578   ⟹   XP_038547506
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01744,646,892 - 44,649,819 (+)NCBI
RefSeq Acc Id: XM_038691579   ⟹   XP_038547507
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01744,646,892 - 44,649,819 (+)NCBI
RefSeq Acc Id: XM_038691581   ⟹   XP_038547509
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01744,647,490 - 44,649,819 (+)NCBI
RefSeq Acc Id: XM_038691582   ⟹   XP_038547510
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01744,646,891 - 44,649,819 (+)NCBI
RefSeq Acc Id: XM_540204   ⟹   XP_540204
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11743,833,906 - 43,842,911 (+)NCBI
Dog10K_Boxer_Tasha1743,529,484 - 43,532,366 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005630555   ⟸   XM_005630498
- Peptide Label: isoform X2
- UniProtKB: E2QW21 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_540204   ⟸   XM_540204
- Peptide Label: isoform X2
- UniProtKB: E2QW21 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013975704   ⟸   XM_014120229
- Peptide Label: isoform X2
- UniProtKB: E2QW21 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000011938   ⟸   ENSCAFT00000012896
RefSeq Acc Id: XP_038354954   ⟸   XM_038499026
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038354952   ⟸   XM_038499024
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038354956   ⟸   XM_038499028
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038354953   ⟸   XM_038499025
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038354955   ⟸   XM_038499027
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038481581   ⟸   XM_038625653
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038481579   ⟸   XM_038625651
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038481580   ⟸   XM_038625652
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038481583   ⟸   XM_038625655
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038481582   ⟸   XM_038625654
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038547505   ⟸   XM_038691577
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038547510   ⟸   XM_038691582
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038547507   ⟸   XM_038691579
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038547506   ⟸   XM_038691578
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038547509   ⟸   XM_038691581
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038309053   ⟸   XM_038453125
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038309054   ⟸   XM_038453126
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038417539   ⟸   XM_038561611
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038417543   ⟸   XM_038561615
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038417541   ⟸   XM_038561613
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038417540   ⟸   XM_038561612
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038417542   ⟸   XM_038561614
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000008098 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCAFP00000011938 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000012896 UniProtKB/TrEMBL
Gene3D-CATH 3.80.10.10 UniProtKB/TrEMBL
InterPro L_dom-like UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/TrEMBL
KEGG Report cfa:483089 UniProtKB/TrEMBL
NCBI Gene LRRTM1 ENTREZGENE
Pfam LRR_8 UniProtKB/TrEMBL
PROSITE LRR UniProtKB/TrEMBL
SMART LRR_TYP UniProtKB/TrEMBL
UniProt E2QW21 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:42829 ENTREZGENE