Elmod3 (ELMO domain containing 3) - Rat Genome Database

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Gene: Elmod3 (ELMO domain containing 3) Rattus norvegicus
Analyze
Symbol: Elmod3
Name: ELMO domain containing 3
RGD ID: 1306408
Description: Predicted to enable GTPase activator activity. Predicted to be involved in regulation of catalytic activity. Predicted to be located in several cellular components, including cytoskeleton; kinocilium; and stereocilium. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 88. Orthologous to human ELMOD3 (ELMO domain containing 3); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; acetamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ELMO domain-containing protein 3; ELMO/CED-12 domain containing 3; Kcmf1; LOC297342; potassium channel modulatory factor 1; Rbed1; RNA binding motif and ELMO domain 1; RNA-binding motif and ELMO domain-containing protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: Elmod3Tn(sb-T2/Bart3)2.42Mcwi  
Genetic Models: F344-Elmod3Tn(sb-T2/Bart3)2.42Mcwi
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24104,614,665 - 104,653,122 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl4104,614,676 - 104,653,053 (-)Ensembl
Rnor_6.04100,422,256 - 100,465,152 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4100,422,252 - 100,465,112 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04165,192,607 - 165,237,016 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44105,866,419 - 106,099,850 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14106,110,901 - 106,344,331 (-)NCBI
Celera493,768,136 - 93,805,963 (-)NCBICelera
Cytogenetic Map4q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:15489334   PMID:17452337  


Genomics

Comparative Map Data
Elmod3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24104,614,665 - 104,653,122 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl4104,614,676 - 104,653,053 (-)Ensembl
Rnor_6.04100,422,256 - 100,465,152 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4100,422,252 - 100,465,112 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04165,192,607 - 165,237,016 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44105,866,419 - 106,099,850 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14106,110,901 - 106,344,331 (-)NCBI
Celera493,768,136 - 93,805,963 (-)NCBICelera
Cytogenetic Map4q31NCBI
ELMOD3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38285,354,769 - 85,391,748 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl285,354,394 - 85,391,752 (+)EnsemblGRCh38hg38GRCh38
GRCh37285,581,892 - 85,618,871 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36285,435,447 - 85,472,382 (+)NCBINCBI36hg18NCBI36
Build 34285,493,593 - 85,530,527NCBI
Celera285,409,846 - 85,447,061 (+)NCBI
Cytogenetic Map2p11.2NCBI
HuRef285,478,667 - 85,515,684 (+)NCBIHuRef
CHM1_1285,511,554 - 85,548,621 (+)NCBICHM1_1
Elmod3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39672,542,905 - 72,575,396 (-)NCBIGRCm39mm39
GRCm39 Ensembl672,542,905 - 72,575,396 (-)Ensembl
GRCm38672,565,922 - 72,598,431 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl672,565,922 - 72,598,413 (-)EnsemblGRCm38mm10GRCm38
MGSCv37672,515,921 - 72,548,336 (-)NCBIGRCm37mm9NCBIm37
MGSCv36672,495,436 - 72,527,851 (-)NCBImm8
Celera674,664,110 - 74,696,606 (-)NCBICelera
Cytogenetic Map6C1NCBI
Elmod3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554242,083,085 - 2,106,664 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554242,082,480 - 2,107,599 (-)NCBIChiLan1.0ChiLan1.0
ELMOD3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A86,958,874 - 86,994,897 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A86,958,957 - 86,994,897 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A85,407,326 - 85,444,298 (+)NCBIMhudiblu_PPA_v0panPan3
ELMOD3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11739,642,101 - 39,668,079 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1739,643,676 - 39,665,726 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1739,313,501 - 39,339,626 (-)NCBI
ROS_Cfam_1.01740,451,641 - 40,477,552 (-)NCBI
ROS_Cfam_1.0 Ensembl1740,446,329 - 40,477,528 (-)Ensembl
UMICH_Zoey_3.11739,518,851 - 39,544,957 (-)NCBI
UNSW_CanFamBas_1.01739,590,458 - 39,616,553 (-)NCBI
UU_Cfam_GSD_1.01739,990,386 - 40,016,502 (-)NCBI
Elmod3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629279,031,658 - 79,053,307 (+)NCBI
SpeTri2.0NW_0049367121,805,141 - 1,827,086 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ELMOD3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl359,369,820 - 59,401,151 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1359,369,816 - 59,401,193 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2362,323,190 - 62,354,561 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ELMOD3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11421,765,160 - 21,803,774 (-)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604590,635,934 - 90,701,866 (+)NCBIVero_WHO_p1.0
Elmod3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474917,749,004 - 17,774,891 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
D4Got300  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24104,650,470 - 104,650,670 (+)MAPPERmRatBN7.2
mRatBN7.24104,650,470 - 104,650,789 (+)MAPPERmRatBN7.2
Rnor_6.04100,462,530 - 100,462,848NCBIRnor6.0
Rnor_6.04100,462,530 - 100,462,729NCBIRnor6.0
Rnor_5.04165,232,913 - 165,233,231UniSTSRnor5.0
Rnor_5.04165,232,913 - 165,233,112UniSTSRnor5.0
RGSC_v3.44106,097,268 - 106,097,586UniSTSRGSC3.4
RGSC_v3.44106,097,268 - 106,097,467UniSTSRGSC3.4
Celera493,803,384 - 93,803,580UniSTS
Celera493,803,384 - 93,803,699UniSTS
Cytogenetic Map4q33UniSTS
RH133457  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24104,562,968 - 104,563,155 (+)MAPPERmRatBN7.2
mRatBN7.24104,562,968 - 104,563,155 (-)MAPPERmRatBN7.2
Rnor_6.04100,454,333 - 100,454,519NCBIRnor6.0
Rnor_6.04100,370,569 - 100,370,755NCBIRnor6.0
Rnor_5.04165,140,920 - 165,141,106UniSTSRnor5.0
Rnor_5.04165,224,716 - 165,224,902UniSTSRnor5.0
RGSC_v3.44105,813,231 - 105,813,417UniSTSRGSC3.4
Celera493,715,108 - 93,715,294UniSTS
RH 3.4 Map4630.57UniSTS
Cytogenetic Map4q33UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)432583980114627242Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
1300139Hrtrt6Heart rate QTL 62.85heart pumping trait (VT:2000009)heart rate (CMO:0000002)439524264116179656Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)444463720155883716Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)444463908148090542Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)444463908148090542Rat
2312567Glom19Glomerulus QTL 191.90.006kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)445456990146803430Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)450119848146803430Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)456647873149491524Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)456698790126192555Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)459948935154902892Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
1578657Bss12Bone structure and strength QTL 128.9femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)460220938105220938Rat
1578658Bss13Bone structure and strength QTL 138femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)460220938105220938Rat
2300179Bmd50Bone mineral density QTL 505.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)460928534105928534Rat
1549839Bw52Body weight QTL 520.0001body mass (VT:0001259)body weight gain (CMO:0000420)461697658115089733Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)462277855128289560Rat
6478743Anxrr40Anxiety related response QTL 400.83076defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)462753847107753847Rat
6478772Anxrr49Anxiety related response QTL 490.15488defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)462753847107753847Rat
6478684Anxrr30Anxiety related response QTL 300.00087defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)462753847107753847Rat
631651Bp124Blood pressure QTL 1243arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)462879517107879517Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)percent change in mean arterial blood pressure (CMO:0002035)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)percent change in systolic blood pressure (CMO:0000747)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)absolute change in pulse pressure (CMO:0001882)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)462933508114921294Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)464528739157573521Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)470362013132642728Rat
634344Hcar7Hepatocarcinoma resistance QTL 77.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)470808386115808386Rat
634344Hcar7Hepatocarcinoma resistance QTL 77.8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)470808386115808386Rat
631646Stl4Serum triglyceride level QTL 46.50.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)473169846132642728Rat
724522Bp146Blood pressure QTL 1462.20.0021arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)473630210118630210Rat
2302051Pia28Pristane induced arthritis QTL 285.30.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)473630210118630210Rat
70167Bw22Body weight QTL 223.1body mass (VT:0001259)body weight (CMO:0000012)476647384117676292Rat
1357342Bw40Body weight QTL 400.001body mass (VT:0001259)body weight (CMO:0000012)476647384117676292Rat
631662Hcar2Hepatocarcinoma resistance QTL 23.10.0003liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)478878504123878504Rat
631556Bp135Blood pressure QTL 1350.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)478881294117676292Rat
738015Pia9Pristane induced arthritis QTL 94.50.048joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)480694870125694870Rat
2306899Bp338Blood pressure QTL 3380.071arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)481006124120102625Rat
1641919Alc22Alcohol consumption QTL 220.0005drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)481192555126192555Rat
70177Xhs1X-ray hypersensitivity QTL 125.1intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)482798864152731274Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)483428419177635233Rat
634334Xhs3X-ray hypersensitivity QTL 310intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)484728680129854654Rat
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)485253748148090731Rat
12798523Anxrr56Anxiety related response QTL 562.830.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)485253748150276390Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)485379421167139601Rat
61476Aia3Adjuvant induced arthritis QTL 33.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)486730991131730991Rat
1578662Bss15Bone structure and strength QTL 1519.6femur width (VT:1000666)femoral neck width (CMO:0001695)487327165132327165Rat
1578670Bss14Bone structure and strength QTL 1416.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)487327165132327165Rat
1578655Bmd11Bone mineral density QTL 1111femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)490850165135850165Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)493308457167139447Rat
631689Scl4Serum cholesterol level QTL 41.90.008blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)495174120140174120Rat
61434Cia3Collagen induced arthritis QTL 34.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4103194656148194656Rat
2317588Eae27Experimental allergic encephalomyelitis QTL 27nervous system integrity trait (VT:0010566)percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)4103194805112478794Rat


Genetic Models
This gene Elmod3 is modified in the following models/strains
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:164
Count of miRNA genes:115
Interacting mature miRNAs:121
Transcripts:ENSRNOT00000057989
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 4 50 17 33 1
Low 3 43 53 41 19 41 8 11 24 18 8 10 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000057989   ⟹   ENSRNOP00000054799
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4104,616,168 - 104,653,053 (-)Ensembl
Rnor_6.0 Ensembl4100,423,759 - 100,465,112 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000086725   ⟹   ENSRNOP00000075730
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4104,614,676 - 104,653,047 (-)Ensembl
Rnor_6.0 Ensembl4100,422,252 - 100,465,106 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000096294   ⟹   ENSRNOP00000091210
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4104,615,983 - 104,653,047 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000107943   ⟹   ENSRNOP00000095578
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4104,616,168 - 104,640,046 (-)Ensembl
RefSeq Acc Id: NM_001013087   ⟹   NP_001013105
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24104,616,166 - 104,653,053 (-)NCBI
Rnor_6.04100,423,757 - 100,465,112 (-)NCBI
Rnor_5.04165,192,607 - 165,237,016 (-)NCBI
RGSC_v3.44105,866,419 - 106,099,850 (-)RGD
Celera493,768,136 - 93,805,963 (-)RGD
Sequence:
RefSeq Acc Id: XM_006236667   ⟹   XP_006236729
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24104,614,665 - 104,653,121 (-)NCBI
Rnor_6.04100,422,256 - 100,465,152 (-)NCBI
Rnor_5.04165,192,607 - 165,237,016 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008762978   ⟹   XP_008761200
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24104,614,665 - 104,653,122 (-)NCBI
Rnor_6.04100,422,256 - 100,465,133 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017592542   ⟹   XP_017448031
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24104,614,665 - 104,652,939 (-)NCBI
Rnor_6.04100,422,256 - 100,465,028 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017592543   ⟹   XP_017448032
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24104,614,665 - 104,653,121 (-)NCBI
Rnor_6.04100,422,256 - 100,465,152 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_001013105   ⟸   NM_001013087
- UniProtKB: Q5XIQ2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006236729   ⟸   XM_006236667
- Peptide Label: isoform X1
- UniProtKB: A0A0G2KBB8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008761200   ⟸   XM_008762978
- Peptide Label: isoform X1
- UniProtKB: A0A0G2KBB8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017448032   ⟸   XM_017592543
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017448031   ⟸   XM_017592542
- Peptide Label: isoform X1
- UniProtKB: A0A0G2KBB8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000054799   ⟸   ENSRNOT00000057989
RefSeq Acc Id: ENSRNOP00000075730   ⟸   ENSRNOT00000086725
RefSeq Acc Id: ENSRNOP00000091210   ⟸   ENSRNOT00000096294
RefSeq Acc Id: ENSRNOP00000095578   ⟸   ENSRNOT00000107943
Protein Domains
ELMO

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5XIQ2-F1-model_v2 AlphaFold Q5XIQ2 1-356 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693136
Promoter ID:EPDNEW_R3655
Type:initiation region
Name:Elmod3_1
Description:ELMO domain containing 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04100,465,097 - 100,465,157EPDNEW

Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Damaging Variants


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
4 100449494 100449495 T C snv GH/OmrMcwi (MCW), WN/N (2020), SS/JrHsdMcwi (MCW), BUF/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), HXB2/IpcvMcwi (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MR/N (2020), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), SR/JrHsd (MCW)
4 100449524 100449525 C T snv SHR/OlalpcvMcwi (2019)
4 100449568 100449569 T A snv BXH2/CubMcwi (2020)
4 100449590 100449591 T C snv BXH2/CubMcwi (2020)
4 100449592 100449593 A C snv BXH2/CubMcwi (2020)
4 100449599 100449600 T C snv BXH2/CubMcwi (2020)
4 100449601 100449602 T A snv BXH2/CubMcwi (2020)
4 100449608 100449609 T C snv FXLE18/Stm (2020), WN/N (2020), WAG/RijCrl (2020), SS/JrHsdMcwi (2019), SR/JrHsd (2020), MR/N (2020), GH/OmrMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), BUF/N (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FXLE16/Stm (2020), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020)
4 100449634 100449635 T A snv LN/MavRrrcAek (2020)
4 100449638 100449639 A G snv LN/MavRrrcAek (2020)
4 100449724 100449725 C T snv SR/JrHsd (MCW)
4 100449850 100449851 A G snv M520/NRrrcMcwi (2019)
4 100449860 100449861 A G snv M520/NRrrcMcwi (2019)
4 100449867 100449868 A T snv M520/NRrrcMcwi (2019)
4 100450017 100450018 G C snv GH/OmrMcwi (MCW), M520/N (MCW), SHRSP/A3NCrl (2019), LEXF1A/Stm (2019), BN/NHsdMcwi (2019)
4 100450048 100450049 G A snv HXB31/IpcvMcwi (2019), PVG/Seac (2019)
4 100450079 100450080 A G snv SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), F344/DuCrl (2019), F344/NCrl (2019), SS/JrHsdMcwi (2019), HXB31/IpcvMcwi (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), PVG/Seac (2019), FXLE16/Stm (2020)
4 100450103 100450104 A G snv SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), F344/DuCrl (2019), F344/NCrl (2019), LL/MavRrrcAek (2020), FXLE16/Stm (2020)
4 100450131 100450132 T A snv F344/DuCrl (2019), F344/NCrl (2019)
4 100450232 100450233 A T snv ACI/N (2020)
4 100450246 100450247 A G snv FXLE16/Stm (2020), ACI/N (2020)
4 100450421 100450422 C A snv M520/NRrrcMcwi (2019)
4 100450423 100450424 G A snv M520/NRrrcMcwi (2019)
4 100450489 100450490 G A snv SR/JrHsd (MCW), SS/JrHsdMcwi (MCW)
4 100450496 100450497 T A snv SR/JrHsd (MCW), SS/JrHsdMcwi (MCW)
4 100450595 100450596 A T snv Buf/N (MCW)
4 100450643 100450644 T G snv MR/N (2020)
4 100450684 100450685 C T snv F344/NCrl (2019), MR/N (2020)
4 100450685 100450686 C T snv F344/NCrl (2019)
4 100450691 100450692 T A snv M520/N (MCW)
4 100450700 100450701 G A snv F344/NCrl (2019), LEXF1A/Stm (2019)
4 100450732 100450733 T C snv F344/N (2020), SS/JrHsdMcwi (2019), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), LEXF1A/Stm (2019), LEXF2B/Stm (2019), LE/Stm (2019), LH/MavRrrcAek (2020)
4 100450734 100450735 G T snv F344/NRrrc (MCW)
4 100450753 100450754 C A snv LEXF1A/Stm (2019)
4 100450898 100450899 G A snv LN/MavRrrcAek (2020)
4 100450899 100450900 G A snv LN/MavRrrcAek (2020)
4 100450940 100450941 T G snv SR/JrHsd (MCW), M520/NRrrcMcwi (2019), LEXF4/Stm (2020), LEXF2B/Stm (2019), LEXF1A/Stm (2019), HXB2/IpcvMcwi (2019), GH/OmrMcwi (MCW), MR/N (2020), SS/JrHsdMcwi (MCW), F344/N (2020)
4 100450984 100450985 C A snv SS/JrHsdMcwi (2019), LEXF4/Stm (2020), F344/N (2020), SS/JrHsdMcwi (MCW), SR/JrHsd (MCW), GH/OmrMcwi (MCW)
4 100451017 100451018 C A snv GH/OmrMcwi (MCW), SS/JrHsdMcwi (MCW), SR/JrHsd (MCW)
4 100451048 100451049 C T snv SS/JrHsdMcwi (MCW), SR/JrHsd (MCW), LEXF10A/StmMcwi (2020)
4 100451080 100451081 C A snv BN-Lx/CubMcwi (2019)
4 100451114 100451115 C T snv SS/JrHsdMcwi (MCW)
4 100451180 100451181 C T snv SR/JrHsd (MCW), SS/JrHsdMcwi (MCW)
4 100451219 100451220 C T snv GH/OmrMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW)
4 100451261 100451262 G A snv SR/JrHsd (MCW), SS/JrHsdMcwi (MCW)
4 100451321 100451322 C T snv WN/N (MCW)
4 100451347 100451348 C A snv F344/NRrrc (MCW)


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
4 165219877 165219878 T C snv LN/MavRrrc (KNAW), LH/MavRrrc (KNAW), LL/MavRrrc (KNAW), SS/JrHsdMcwi (MCW), SR/JrHsd (MCW), GH/OmrMcwi (MCW), SR/JrHsd (KNAW), SS/Jr (KNAW), SS/JrHsdMcwi (KNAW), WAG/Rij (KNAW), F344/NCrl (KNAW), F344/NHsd (KNAW), LE/Stm (Illumina) (KNAW), SHR/NCrlPrin (KNAW), SHR/NHsd (KNAW), SHR/OlaIpcv (KNAW), WKY/Gcrc (KNAW), F344/NRrrc (Illumina) (KNAW), SHRSP/Gcrc (KNAW), SHR/OlaIpcvPrin (KNAW)
4 165219991 165219992 T C snv GH/OmrMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW)
4 165220107 165220108 C T snv SS/JrHsdMcwi (MCW), SR/JrHsd (MCW)
4 165220400 165220401 G C snv GH/OmrMcwi (MCW)
4 165220462 165220463 A G snv SR/JrHsd (MCW), SS/JrHsdMcwi (MCW)
4 165220486 165220487 A G snv SS/JrHsdMcwi (MCW), SR/JrHsd (MCW)
4 165220872 165220873 G A snv SS/JrHsdMcwi (MCW), SR/JrHsd (MCW)
4 165220879 165220880 T A snv SS/JrHsdMcwi (MCW), SR/JrHsd (MCW)
4 165221115 165221116 T C snv SS/JrHsdMcwi (MCW), GH/OmrMcwi (MCW), SR/JrHsd (MCW)
4 165221323 165221324 T G snv GH/OmrMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), Crl:SD (UDEL)
4 165221367 165221368 C A snv SR/JrHsd (MCW), GH/OmrMcwi (MCW), SS/JrHsdMcwi (MCW), Crl:SD (UDEL)
4 165221400 165221401 C A snv SS/JrHsdMcwi (MCW), GH/OmrMcwi (MCW), SR/JrHsd (MCW)
4 165221431 165221432 C T snv SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), GH/OmrMcwi (MCW)
4 165221497 165221498 C T snv SS/JrHsdMcwi (MCW), SR/JrHsd (MCW)
4 165221563 165221564 C T snv SS/JrHsdMcwi (MCW), SR/JrHsd (MCW)
4 165221602 165221603 C T snv GH/OmrMcwi (MCW), SS/JrHsdMcwi (MCW), SR/JrHsd (MCW)
4 165221644 165221645 G A snv SR/JrHsd (MCW), SS/JrHsdMcwi (MCW)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306408 AgrOrtholog
BioCyc Gene G2FUF-44141 BioCyc
Ensembl Genes ENSRNOG00000038102 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000054799 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000075730 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000057989 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000086725 ENTREZGENE, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7134106 IMAGE-MGC_LOAD
InterPro ELMO_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ELMOD3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:297342 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94399 IMAGE-MGC_LOAD
NCBI Gene 297342 ENTREZGENE
PANTHER PTHR12771:SF2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam ELMO_CED12 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Elmod3 PhenoGen
PROSITE ELMO UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2KBB8 ENTREZGENE, UniProtKB/TrEMBL
  ELMD3_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2007-02-05 Rbed1  RNA binding motif and ELMO domain 1  Kcmf1  potassium channel modulatory factor 1  Symbol and Name updated to reflect Human and Mouse nomenclature 1299863 APPROVED
2005-12-06 Kcmf1  potassium channel modulatory factor 1  Kcmf1_predicted  potassium channel modulatory factor 1 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Kcmf1_predicted  potassium channel modulatory factor 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED