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Gene: Slc6a13 (solute carrier family 6 member 13) Rattus norvegicus

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Symbol:

Slc6a13

Name:

solute carrier family 6 member 13

RGD ID:

620788

Description:

Enables amino acid binding activity; creatine transmembrane transporter activity; and organic acid:sodium symporter activity. Involved in gamma-aminobutyric acid import; neurotransmitter transport; and organic acid transmembrane transport. Located in plasma membrane. Orthologous to human SLC6A13 (solute carrier family 6 member 13); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

GAT-2; sodium- and chloride-dependent GABA transporter 2; solute carrier family 6 (neurotransmitter transporter), member 13; solute carrier family 6 (neurotransmitter transporter, GABA), member 13

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SLC6A13 (solute carrier family 6 member 13)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Slc6a13 (solute carrier family 6 (neurotransmitter transporter, GABA), member 13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Slc6a13 (solute carrier family 6 member 13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SLC6A13 (solute carrier family 6 member 13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SLC6A13 (solute carrier family 6 member 13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Slc6a13 (solute carrier family 6 member 13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SLC6A13 (solute carrier family 6 member 13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SLC6A13 (solute carrier family 6 member 13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	TRAPPC2L (trafficking protein particle complex subunit 2L)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	SLC6A13 (solute carrier family 6 member 13)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Slc6a13 (solute carrier family 6 (neurotransmitter transporter, GABA), member 13)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	slc6a13 (solute carrier family 6 member 13)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	snf-11	Alliance	DIOPT (Ensembl Compara\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	CG13795	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Drosophila melanogaster (fruit fly):	CG13796	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Drosophila melanogaster (fruit fly):	CG33296	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Drosophila melanogaster (fruit fly):	CG13793	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Drosophila melanogaster (fruit fly):	CG13794	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Drosophila melanogaster (fruit fly):	CG31904	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	slc6a13	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	156,211,381 - 156,248,491 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	156,211,462 - 156,248,489 (+)	Ensembl				GRCr8
mRatBN7.2	4	154,539,246 - 154,577,784 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	154,540,468 - 154,576,152 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	160,806,682 - 160,842,331 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	156,590,166 - 156,625,811 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	155,213,564 - 155,249,248 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	153,874,942 - 153,912,185 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	153,874,852 - 153,912,155 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	220,962,968 - 221,000,197 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	157,736,264 - 157,771,945 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	143,379,280 - 143,414,859 (+)	NCBI		Celera
RGSC_v3.1	4	157,981,199 - 158,016,881 (+)	NCBI
Cytogenetic Map	4	q42	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Hyperphosphatemic Familial Tumoral Calcinosis 1 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(-)-epigallocatechin 3-gallate (ISO)

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

2-palmitoylglycerol (ISO)

3,3',4,4',5-pentachlorobiphenyl (EXP)

3H-1,2-dithiole-3-thione (EXP)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

aflatoxin B1 (ISO)

alachlor (EXP)

ammonium chloride (EXP)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (EXP,ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

calcium silicate (ISO)

cisplatin (ISO)

clofibrate (ISO)

clofibric acid (EXP)

coumarin (EXP)

crocidolite asbestos (ISO)

dioxygen (ISO)

diquat (ISO)

endosulfan (EXP)

epoxiconazole (ISO)

ethyl methanesulfonate (ISO)

flavonoids (EXP)

fluconazole (EXP)

flutamide (EXP)

folic acid (ISO)

furan (EXP)

gamma-aminobutyric acid (ISO)

graphite (EXP)

GW 4064 (ISO)

hydralazine (ISO)

icariin (ISO)

leflunomide (EXP)

Licochalcone B (ISO)

lipopolysaccharide (ISO)

methamphetamine (EXP)

methidathion (ISO)

methyl methanesulfonate (ISO)

Muraglitazar (EXP)

N-nitrosodiethylamine (EXP)

N-Nitrosopyrrolidine (ISO)

nitrofen (EXP)

O-methyleugenol (ISO)

okadaic acid (ISO)

paracetamol (ISO)

perfluorohexanesulfonic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (EXP)

pirinixic acid (ISO)

potassium chromate (ISO)

pregnenolone 16alpha-carbonitrile (EXP)

resveratrol (ISO)

rotenone (EXP,ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SCH 23390 (EXP)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

succimer (ISO)

Tesaglitazar (EXP)

testosterone (ISO)

tetrachloromethane (EXP,ISO)

Theaflavin 3,3'-digallate (ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

toluene (EXP)

tremolite asbestos (ISO)

triadimefon (EXP)

triclosan (ISO)

trimellitic anhydride (ISO)

troglitazone (EXP)

valproic acid (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

amino acid import across plasma membrane (ISO)

amino acid transmembrane transport (IEA)

amino acid transport (IBA)

creatine transmembrane transport (IDA)

gamma-aminobutyric acid import (IDA,IMP)

gamma-aminobutyric acid transport (IEA)

monocarboxylic acid transport (ISO)

neurotransmitter transport (IDA,IEA)

sodium ion transmembrane transport (IBA,IEA)

taurine transmembrane transport (IEA,IMP,ISO)

transmembrane transport (IEA)

Cellular Component

basolateral plasma membrane (IEA,ISO)

cell projection (IBA)

membrane (IEA)

plasma membrane (IBA,IDA,IEA,ISO)

Molecular Function

amino acid binding (IDA)

amino acid transmembrane transporter activity (ISO)

amino acid:sodium symporter activity (IEA,ISO)

creatine transmembrane transporter activity (IDA)

gamma-aminobutyric acid transmembrane transporter activity (IDA,IMP)

gamma-aminobutyric acid:sodium:chloride symporter activity (IBA,IDA,IEA,ISO)

metal ion binding (IEA)

monocarboxylic acid transmembrane transporter activity (ISO)

protein binding (ISO)

symporter activity (IEA)

taurine:sodium symporter activity (IDA,IEA,IMP,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Molecular heterogeneity of the gamma-aminobutyric acid (GABA) transport system. Cloning of two novel high affinity GABA transporters from rat brain.	Borden LA, etal., J Biol Chem 1992 Oct 15;267(29):21098-104.
2.	Neuronal and glial localization of GABA transporter immunoreactivity in the myenteric plexus.	Fletcher EL, etal., Cell Tissue Res 2002 Jun;308(3):339-46.
3.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4.	Involvement of γ-aminobutyric acid transporter 2 in the hepatic uptake of taurine in rats.	Ikeda S, etal., Am J Physiol Gastrointest Liver Physiol. 2012 Aug 1;303(3):G291-7. doi: 10.1152/ajpgi.00388.2011. Epub 2012 Jun 7.
5.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
6.	Carnitine precursor γ-butyrobetaine is a novel substrate of the Na(+)- and Cl(-)-dependent GABA transporter Gat2.	Nakanishi T, etal., Drug Metab Pharmacokinet. 2011;26(6):632-6. doi: 10.2133/dmpk.dmpk-11-nt-053. Epub 2011 Oct 12.
7.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
8.	GOA pipeline	RGD automated data pipeline
9.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
10.	γ-Aminobutyric acid transporter 2 mediates the hepatic uptake of guanidinoacetate, the creatine biosynthetic precursor, in rats.	Tachikawa M, etal., PLoS One. 2012;7(2):e32557. doi: 10.1371/journal.pone.0032557. Epub 2012 Feb 27.
11.	Deletion of the γ-aminobutyric acid transporter 2 (GAT2 and SLC6A13) gene in mice leads to changes in liver and brain taurine contents.	Zhou Y, etal., J Biol Chem. 2012 Oct 12;287(42):35733-35746. doi: 10.1074/jbc.M112.368175. Epub 2012 Aug 15.

Additional References at PubMed

PMID:19056867

Genomics

Comparative Map Data

Slc6a13
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	156,211,381 - 156,248,491 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	156,211,462 - 156,248,489 (+)	Ensembl				GRCr8
mRatBN7.2	4	154,539,246 - 154,577,784 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	154,540,468 - 154,576,152 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	160,806,682 - 160,842,331 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	156,590,166 - 156,625,811 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	155,213,564 - 155,249,248 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	153,874,942 - 153,912,185 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	153,874,852 - 153,912,155 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	220,962,968 - 221,000,197 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	157,736,264 - 157,771,945 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	143,379,280 - 143,414,859 (+)	NCBI		Celera
RGSC_v3.1	4	157,981,199 - 158,016,881 (+)	NCBI
Cytogenetic Map	4	q42	NCBI

SLC6A13
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	220,622 - 262,836 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	220,621 - 262,873 (-)	Ensembl			hg38	GRCh38
GRCh37	12	329,788 - 372,002 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	200,052 - 242,263 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	12	200,051 - 242,263	NCBI
Celera	12	1,938,637 - 1,980,875 (-)	NCBI		Celera
Cytogenetic Map	12	p13.33	NCBI
HuRef	12	182,903 - 225,079 (-)	NCBI		HuRef
CHM1_1	12	328,777 - 371,038 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	217,551 - 259,667 (-)	NCBI		T2T-CHM13v2.0

Slc6a13
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	121,277,247 - 121,314,680 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	121,277,186 - 121,314,692 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	6	121,300,288 - 121,337,721 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	121,300,227 - 121,337,733 (+)	Ensembl			mm10	GRCm38
MGSCv37	6	121,250,314 - 121,287,736 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	6	121,265,915 - 121,303,337 (+)	NCBI		MGSCv36	mm8
Celera	6	123,134,593 - 123,173,892 (+)	NCBI		Celera
Cytogenetic Map	6	F1	NCBI
cM Map	6	57.22	NCBI

Slc6a13
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955454	6,866,740 - 6,940,734 (+)	Ensembl
ChiLan1.0	NW_004955454	6,866,740 - 6,940,686 (+)	NCBI	ChiLan1.0	ChiLan1.0

SLC6A13
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	5,705,028 - 5,756,691 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	5,701,785 - 5,761,918 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	279,434 - 334,226 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	255,141 - 296,926 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	255,141 - 296,926 (-)	Ensembl			panPan2	panpan1.1

SLC6A13
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	42,302,762 - 42,338,911 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	42,270,448 - 42,336,464 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	4,345,500 - 4,381,643 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	42,660,870 - 42,697,019 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	42,660,893 - 42,694,550 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	42,601,961 - 42,637,965 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	42,573,532 - 42,609,397 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	3,705,273 - 3,741,637 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Slc6a13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	108,728,385 - 108,767,931 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936606	415,177 - 455,721 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936606	416,170 - 455,720 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC6A13
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	67,577,197 - 67,614,054 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	5	67,574,149 - 67,617,513 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	69,865,018 - 69,905,417 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC6A13
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	223,912 - 274,499 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	223,793 - 264,719 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666063	8,072,317 - 8,116,503 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Variants

Variants in Slc6a13
809 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	61
Count of miRNA genes:	58
Interacting mature miRNAs:	61
Transcripts:	ENSRNOT00000018083
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
6478754	Anxrr43	Anxiety related response QTL 43		0.14035	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	146370897	184426481	Rat
724558	Plsm2	Polydactyly-luxate syndrome (PLS) morphotypes QTL 2		0.0003	hindlimb integrity trait (VT:0010563)	hind foot phalanges count (CMO:0001949)	4	134095016	179095016	Rat
1582237	Kidm34	Kidney mass QTL 34	4	0.0001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	4	149763204	169799698	Rat
61446	Coreg2	Compensatory renal growth QTL 2	3.5		kidney mass (VT:0002707)	compensatory renal growth score (CMO:0001894)	4	150095743	159267220	Rat
6478693	Anxrr32	Anxiety related response QTL 32		0.00092	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	4	146370897	184426481	Rat
6478757	Anxrr44	Anxiety related response QTL 44		0.01087	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
1358364	Sradr4	Stress Responsive Adrenal Weight QTL 4	4.92		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	4	131384565	176384565	Rat
10755501	Bp390	Blood pressure QTL 390	2.5		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	4	27730518	170099664	Rat
6478763	Anxrr46	Anxiety related response QTL 46		0.07428	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	112427331	157427331	Rat
6478760	Anxrr45	Anxiety related response QTL 45		0.06717	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	112427331	157427331	Rat
61451	Ciaa4	CIA Autoantibody QTL 4	3.1		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	4	123870974	168870974	Rat
1331802	Srn5	Serum renin concentration QTL 5	3.045		renin activity (VT:0005581)	plasma renin activity level (CMO:0000116)	4	117559384	162559384	Rat
1331738	Bp209	Blood pressure QTL 209	2.979		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	140059299	181024663	Rat
6478700	Anxrr33	Anxiety related response QTL 33		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	146370897	184426481	Rat
1298524	Oia8	Oil induced arthritis QTL 8			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	140059299	184426481	Rat
738009	Sach4	Saccharine consumption QTL 4	4.9	0.000016	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	4	60916264	184426481	Rat
7207480	Bss105	Bone structure and strength QTL 105	8.1		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	4	111383604	156383604	Rat
634335	Anxrr16	Anxiety related response QTL 16	7.22		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	4	94638356	168870820	Rat
737821	Hcar9	Hepatocarcinoma resistance QTL 9	3.7		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	4	106848959	168870974	Rat
7411558	Bw133	Body weight QTL 133	13.84	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	127263297	172263297	Rat
6478778	Anxrr51	Anxiety related response QTL 51		0.25384	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	4	126334185	171334185	Rat
10401796	Kidm48	Kidney mass QTL 48			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	4	147299608	184426481	Rat
6478718	Anxrr34	Anxiety related response QTL 34		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	146370897	184426481	Rat
6478782	Anxrr52	Anxiety related response QTL 52		0.02091	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
631511	Pia7	Pristane induced arthritis QTL 7	4.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	123870974	168870974	Rat
1549832	Bss3	Bone structure and strength QTL 3	11		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	4	111383604	156383604	Rat
634347	Hcar8	Hepatocarcinoma resistance QTL 8	5.8		liver integrity trait (VT:0010547)	liver tumorous lesion area to total liver area ratio (CMO:0001075)	4	124700988	169700988	Rat
6478720	Alc23	Alcohol consumption QTL 23		0.00509	drinking behavior trait (VT:0001422)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	155834926	184426481	Rat
6478785	Anxrr53	Anxiety related response QTL 53		0.01397	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
738031	Alc14	Alcohol consumption QTL 14	7.6	0.00003	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	174095838	Rat
1576316	Ept5	Estrogen-induced pituitary tumorigenesis QTL 5	3.8		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	4	100752691	179366077	Rat
1581566	Eae21	Experimental allergic encephalomyelitis QTL 21	6.2		body mass (VT:0001259)	maximum body weight loss to initial body weight ratio (CMO:0001400)	4	137447185	182447185	Rat
1576305	Emca6	Estrogen-induced mammary cancer QTL 6	5.8		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	4	45429709	157555683	Rat
1578674	Bmd12	Bone mineral density QTL 12	3.8		femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	4	137430611	182430611	Rat
6478728	Anxrr36	Anxiety related response QTL 36		0.01061	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
738016	Alc16	Alcohol consumption QTL 16	3.6	0.00015	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	184426481	Rat
1358202	Gluco11	Glucose level QTL 11	2.4	0.02	adipocyte glucose uptake trait (VT:0004185)	absolute change in adipocyte glucose uptake (CMO:0000873)	4	86709649	168870974	Rat
61422	Cia13	Collagen induced arthritis QTL 13	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	134199006	168870974	Rat
634342	Cia24	Collagen induced arthritis QTL 24	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	148121375	176967367	Rat
6478733	Anxrr37	Anxiety related response QTL 37		0.00095	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
737978	Pia23	Pristane induced arthritis QTL 23	5.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	123870974	168870974	Rat
61362	Oia2	Oil induced arthritis QTL 2		0.001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	140059299	184426481	Rat
631674	Iddm14	Insulin dependent diabetes mellitus QTL 14			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	4	65495851	159259805	Rat
6478737	Anxrr38	Anxiety related response QTL 38		0.00159	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
12798519	Anxrr54	Anxiety related response QTL 54	2.54	0.05	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	116184844	161184844	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	12212457	182430611	Rat
6478748	Anxrr42	Anxiety related response QTL 42		0.28008	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	146370897	184426481	Rat
12798525	Anxrr57	Anxiety related response QTL 57	3.21	0.05	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	148834094	168870974	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
3	9	67	140	90	90	59	28	59	6	266	116	123	81	60	31	9	9

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001439614	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001439615	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001439616	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_133623	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237218	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237219	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237220	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237221	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237222	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237223	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106983	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063285457	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473964	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ210229	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	M95762	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000018083 ⟹ ENSRNOP00000018083

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	156,211,462 - 156,248,489 (+)	Ensembl
mRatBN7.2 Ensembl	4	154,540,468 - 154,576,152 (+)	Ensembl
Rnor_6.0 Ensembl	4	153,876,149 - 153,911,966 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000079744 ⟹ ENSRNOP00000071638

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	156,216,236 - 156,248,489 (+)	Ensembl
mRatBN7.2 Ensembl	4	154,544,022 - 154,576,152 (+)	Ensembl
Rnor_6.0 Ensembl	4	153,874,852 - 153,912,155 (+)	Ensembl

RefSeq Acc Id:

NM_133623 ⟹ NP_598307

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	156,212,606 - 156,248,285 (+)	NCBI
mRatBN7.2	4	154,540,468 - 154,576,152 (+)	NCBI
Rnor_6.0	4	153,876,149 - 153,911,966 (+)	NCBI
Rnor_5.0	4	220,962,968 - 221,000,197 (+)	NCBI
RGSC_v3.4	4	157,736,264 - 157,771,945 (+)	RGD
Celera	4	143,379,280 - 143,414,859 (+)	RGD

Sequence:

show sequence

GGCAGCGAACACAAGCGCATCCGGTAGAACGGAAAGAACAGGAATTGCAGAGTGACTTCAAGTC
TCCATACGATTTACTACCCGGGTGACGGCAGTGACTCGACAGAGTAGCGGCTGCAGGTGGGATG
GATAACAGGGTCTCGGGAACGACCAGTAATGGAGAGACAAAGCCAGTGTGTCCAGTCATGGAGA
AGGTGGAGGAAGACGGTACCTTGGAACGGGAGCAATGGACCAACAAGATGGAGTTCGTACTGTC
AGTGGCGGGAGAGATCATTGGCTTAGGCAACGTCTGGAGGTTTCCCTATCTCTGCTACAAGAAC
GGGGGAGGTGCCTTCTTTATTCCCTACCTCATCTTCCTATTTACCTGTGGCATTCCTGTCTTCT
TCCTGGAGACAGCGCTTGGCCAGTACACCAACCAGGGAGGCATCACAGCCTGGAGGAAAATCTG
TCCCATCTTCGAGGGCATCGGCTATGCCTCACAGATGATCGTCAGCCTTCTCAATGTCTACTAC
ATCGTTGTCCTGGCCTGGGCCCTCTTCTACCTCTTCAGCAGCTTCACCACTGACCTCCCCTGGG
GTAGCTGCAGCCACGAGTGGAATACAGAAAACTGTGTGGAGTTCCAGAAAACCAACAATTCCCT
GAATGTGACTTCTGAGAATGCCACATCCCCTGTCATCGAGTTCTGGGAGAGGCGAGTCCTGAAG
ATCTCAGATGGCATCCAGCACCTGGGGTCCCTGCGCTGGGAGCTGGTCCTGTGCCTCCTGCTTG
CCTGGATCATCTGCTATTTCTGCATCTGGAAAGGGGTCAAGTCCACAGGCAAGGTGGTGTACTT
CACAGCTACTTTCCCTTACCTCATGCTGGTGGTCCTGTTGATCCGAGGAGTAACACTGCCTGGA
GCAGCCCAGGGAATTCAGTTTTACCTGTACCCCAACATCACACGTCTGTGGGATCCCCAGGTGT
GGATGGATGCGGGCACCCAGATCTTCTTCTCCTTTGCCATCTGCCTGGGGTGCCTCACGGCCCT
GGGCAGCTACAACAAGTACCACAACAACTGCTACAGGGACTGCGTCGCCCTTTGCATTCTCAAC
AGCAGCACCAGCTTCGTGGCCGGGTTTGCCATCTTCTCCATCCTGGGCTTCATGTCTCAGGAGC
AGGGCGTACCCATATCTGAGGTTGCTGAATCAGGCCCTGGCCTGGCATTCATCGCCTACCCTCG
AGCTGTGGTGATGTTACCTTTCTCGCCTTTGTGGGCCTGCTGTTTCTTCTTCATGGTGGTTCTC
CTGGGACTAGACAGCCAGTTTGTGTGTGTAGAAAGCCTCGTGACAGCGCTGGTGGACATGTATC
CCCGGGTGTTCCGTAAGAAGAACCGGAGGGAGATTCTCATCCTCATCGTGTCTGTCGTCTCTTT
CTTCATCGGGCTCATTATGCTCACAGAGGGCGGCATGTACGTGTTCCAGCTCTTCGACTACTAT
GCGGCCAGTGGCATGTGTCTTCTCTTTGTGGCCATCTTTGAGTCCCTCTGTGTGGCTTGGGTTT
ACGGAGCCAGCCGCTTCTATGACAACATTGAAGATATGATTGGGTACAAGCCGTGGCCTCTTAT
CAAATACTGTTGGCTCTTTTTCACGCCAGCTGTGTGCCTGGCAACCTTCCTGTTCTCCCTGATC
AAATACACGCCACTGACCTACAACAAGAAGTACACATATCCATGGTGGGGGGATGCCCTGGGGT
GGCTCCTAGCTCTGTCCTCCATGGTCTGCATTCCTGCCTGGAGCATCTACAAGCTCAGGACTCT
CAAGGGCCCACTCAGAGAGAGACTTCGCCAGCTCGTGTGCCCGGCTGAAGACCTTCCCCAGAAG
AGCCAACCAGAGCTGACTTCTCCAGCGACACCGATGACGTCCCTCCTCAGGCTCACAGAACTGG
AGTCTAACTGCTAGGGACGAGGCCTTTGACACACCTGCGAGTCTGTCTGTGGGGACAGCTACAG
ACACAGAGGGCAGAACCACCCCTCCGTGCTGGGGCAGAGAGACA

hide sequence

RefSeq Acc Id:

XM_006237218 ⟹ XP_006237280

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	156,211,381 - 156,248,491 (+)	NCBI
mRatBN7.2	4	154,539,246 - 154,577,784 (+)	NCBI
Rnor_6.0	4	153,874,942 - 153,912,185 (+)	NCBI
Rnor_5.0	4	220,962,968 - 221,000,197 (+)	NCBI

Sequence:

show sequence

TACAAGCACTACAGGGCGGTCTCCAGCCACGCTTTAAATAGCCAGCCCCTTCCCTGGCCCCCTG
GAGAATTCTCCGACAGGACCTCAGGCAGAAACTTCACCAAGGTGGGATGGATAACAGGGTCTCG
GGAACGACCAGTAATGGAGAGACAAAGCCAGTGTGTCCAGTCATGGAGAAGGTGGAGGAAGATG
GTACCTTGGAACGGGAGCAATGGACCAACAAGATGGAGTTCGTACTGTCAGTGGCGGGAGAGAT
CATTGGCTTAGGCAACGTCTGGAGGTTTCCCTATCTCTGCTACAAGAACGGGGGAGGTGCCTTC
TTTATTCCCTACCTCATCTTCCTATTTACCTGTGGCATTCCTGTCTTCTTCCTGGAGACAGCGC
TTGGCCAGTACACCAACCAGGGAGGCATCACAGCCTGGAGGAAAATCTGTCCCATCTTCGAGGC
TTCAGTCCCCTCTCCAGGCATCGGCTATGCCTCACAGATGATCGTCAGCCTTCTCAATGTCTAC
TACATCGTTGTCCTGGCCTGGGCCCTCTTCTACCTCTTCAGCAGCTTCACCACTGACCTCCCCT
GGGGTAGCTGCAGCCACGAGTGGAATACAGAAAACTGTGTGGAGTTCCAGAAAACCAACAATTC
CCTGAATGTGACTTCTGAGAATGCCACATCCCCTGTCATCGAGTTCTGGGAGAGGCGAGTCCTG
AAGATCTCAGATGGCATCCAGCACCTGGGGTCCCTGCGCTGGGAGCTGGTCCTGTGCCTCCTGC
TTGCCTGGATCATCTGCTATTTCTGCATCTGGAAAGGGGTCAAGTCCACAGGCAAGGTGGTGTA
CTTCACAGCTACTTTCCCTTACCTCATGCTGGTGGTCCTGTTGATCCGAGGAGTAACACTGCCT
GGAGCAGCCCAGGGAATTCAGTTTTACCTGTACCCCAACATCACACGTCTGTGGGATCCCCAGG
TGTGGATGGATGCGGGCACCCAGATCTTCTTCTCCTTTGCCATCTGCCTGGGGTGCCTCACGGC
CCTGGGCAGCTACAACAAGTACCACAACAACTGCTACAGGGACTGCGTCGCCCTTTGCATTCTC
AACAGCAGCACCAGCTTCGTGGCCGGGTTTGCCATCTTCTCCATCCTGGGCTTCATGTCTCAGG
AGCAGGGCGTACCCATATCTGAGGTTGCTGAATCAGGCCCTGGCCTGGCATTCATCGCCTACCC
TCGAGCTGTGGTGATGTTACCTTTCTCGCCTTTGTGGGCCTGCTGTTTCTTCTTCATGGTGGTT
CTCCTGGGACTAGACAGCCAGTTTGTGTGTGTAGAAAGCCTCGTGACAGCGCTGGTGGACATGT
ATCCCCGGGTGTTCCGTAAGAAGAACCGGAGGGAGATTCTCATCCTCATCGTGTCTGTCGTCTC
TTTCTTCATCGGGCTCATTATGANNNATTNCATTATGCTCACAGAGGGCGGCATGTACGTGTTC
CAGCTCTTCGACTACTATGCGGCCAGTGGCATGTGTCTTCTCTTTGTGGCCATCTTTGAGTCCC
TCTGTGTGGCTTGGGTTTACGGAGCCAGCCGCTTCTATGACAACATTGAAGATATGATTGGGTA
CAAGCCGTGGCCTCTTATCAAATACTGTTGGCTCTTTTTCACGCCAGCTGTGTGCCTGGCAACC
TTCCTGTTCTCCCTGATCAAATACACGCCACTGACCTACAACAAGAAGTACACATATCCATGGT
GGGGGGATGCCCTGGGGTGGCTCCTAGCTCTGTCCTCCATGGTCTGCATTCCTGCCTGGAGCAT
CTACAAGCTCAGGACTCTCAAGGGCCCACTCAGAGAGAGACTTCGCCAGCTCGTGTGCCCGGCT
GAAGACCTTCCCCAGAAGAGCCAACCAGAGCTGACTTCTCCAGCGACACCGATGACGTCCCTCC
TCAGGCTCACAGAACTGGAGTCTAACTGCTAGGGACGAGGCCTTTGACACACCTGCGAGTCTGT
CTGTGGGGACAGCTACAGACACAGAGGGCAGAACCACCCCTCCGTGCTGGGGCAGAGAGACAAA
AGGGGGTATTTGGAAGCTGCCTTCTGAACTGGGAACCTCCTATTTTGATACCCCTATTCCAGGG
TGGTACGCACATTGTGACATGCCCAAATCAACAACACCCCTTTGAGGCAGCTTAGGAAAGCCCA
GGGAGGACTGGGGAGGTGAAAGCCTGGCTTGTCACTGGGTTCGCTTCCTTCCATTAAATCCAAC
TTCCTCCCACAACTGCTTGTCGACA

hide sequence

RefSeq Acc Id:

XM_006237219 ⟹ XP_006237281

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	156,211,467 - 156,248,491 (+)	NCBI
mRatBN7.2	4	154,539,335 - 154,577,784 (+)	NCBI
Rnor_6.0	4	153,874,946 - 153,912,185 (+)	NCBI
Rnor_5.0	4	220,962,968 - 221,000,197 (+)	NCBI

Sequence:

show sequence

AGCACTACAGGGCGGTCTCCAGCCACGCTTTAAATAGCCAGCCCCTTCCCTGGCCCCCTGGAGA
ATTCTCCGACAGGACCTCAGGCAGAAACTTCACCAAGGCAGCGAACACAAGCGCATCCGGTAGA
ACGGAAAGAACAGGAATTGCAGAGTGACTTCAAGTCTCCATACGATTTACTACCCGGGTGACGG
CAGTGACTCGACAGAGTAGCGGCTGCAGGTGGGATGGATAACAGGGTCTCGGGAACGACCAGTA
ATGGAGAGACAAAGCCAGTGTGTCCAGTCATGGAGAAGGTGGAGGAAGATGGTACCTTGGAACG
GGAGCAATGGACCAACAAGATGGAGTTCGTACTGTCAGTGGCGGGAGAGATCATTGGCTTAGGC
AACGTCTGGAGGTTTCCCTATCTCTGCTACAAGAACGGGGGAGGTGCCTTCTTTATTCCCTACC
TCATCTTCCTATTTACCTGTGGCATTCCTGTCTTCTTCCTGGAGACAGCGCTTGGCCAGTACAC
CAACCAGGGAGGCATCACAGCCTGGAGGAAAATCTGTCCCATCTTCGAGGCTTCAGTCCCCTCT
CCAGGCATCGGCTATGCCTCACAGATGATCGTCAGCCTTCTCAATGTCTACTACATCGTTGTCC
TGGCCTGGGCCCTCTTCTACCTCTTCAGCAGCTTCACCACTGACCTCCCCTGGGGTAGCTGCAG
CCACGAGTGGAATACAGAAAACTGTGTGGAGTTCCAGAAAACCAACAATTCCCTGAATGTGACT
TCTGAGAATGCCACATCCCCTGTCATCGAGTTCTGGGAGAGGCGAGTCCTGAAGATCTCAGATG
GCATCCAGCACCTGGGGTCCCTGCGCTGGGAGCTGGTCCTGTGCCTCCTGCTTGCCTGGATCAT
CTGCTATTTCTGCATCTGGAAAGGGGTCAAGTCCACAGGCAAGGTGGTGTACTTCACAGCTACT
TTCCCTTACCTCATGCTGGTGGTCCTGTTGATCCGAGGAGTAACACTGCCTGGAGCAGCCCAGG
GAATTCAGTTTTACCTGTACCCCAACATCACACGTCTGTGGGATCCCCAGGTGTGGATGGATGC
GGGCACCCAGATCTTCTTCTCCTTTGCCATCTGCCTGGGGTGCCTCACGGCCCTGGGCAGCTAC
AACAAGTACCACAACAACTGCTACAGGGACTGCGTCGCCCTTTGCATTCTCAACAGCAGCACCA
GCTTCGTGGCCGGGTTTGCCATCTTCTCCATCCTGGGCTTCATGTCTCAGGAGCAGGGCGTACC
CATATCTGAGGTTGCTGAATCAGGCCCTGGCCTGGCATTCATCGCCTACCCTCGAGCTGTGGTG
ATGTTACCTTTCTCGCCTTTGTGGGCCTGCTGTTTCTTCTTCATGGTGGTTCTCCTGGGACTAG
ACAGCCAGTTTGTGTGTGTAGAAAGCCTCGTGACAGCGCTGGTGGACATGTATCCCCGGGTGTT
CCGTAAGAAGAACCGGAGGGAGATTCTCATCCTCATCGTGTCTGTCGTCTCTTTCTTCATCGGG
CTCATTATGANNNATTNCATTATGCTCACAGAGGGCGGCATGTACGTGTTCCAGCTCTTCGACT
ACTATGCGGCCAGTGGCATGTGTCTTCTCTTTGTGGCCATCTTTGAGTCCCTCTGTGTGGCTTG
GGTTTACGGAGCCAGCCGCTTCTATGACAACATTGAAGATATGATTGGGTACAAGCCGTGGCCT
CTTATCAAATACTGTTGGCTCTTTTTCACGCCAGCTGTGTGCCTGGCAACCTTCCTGTTCTCCC
TGATCAAATACACGCCACTGACCTACAACAAGAAGTACACATATCCATGGTGGGGGGATGCCCT
GGGGTGGCTCCTAGCTCTGTCCTCCATGGTCTGCATTCCTGCCTGGAGCATCTACAAGCTCAGG
ACTCTCAAGGGCCCACTCAGAGAGAGACTTCGCCAGCTCGTGTGCCCGGCTGAAGACCTTCCCC
AGAAGAGCCAACCAGAGCTGACTTCTCCAGCGACACCGATGACGTCCCTCCTCAGGCTCACAGA
ACTGGAGTCTAACTGCTAGGGACGAGGCCTTTGACACACCTGCGAGTCTGTCTGTGGGGACAGC
TACAGACACAGAGGGCAGAACCACCCCTCCGTGCTGGGGCAGAGAGACAAAAGGGGGTATTTGG
AAGCTGCCTTCTGAACTGGGAACCTCCTATTTTGATACCCCTATTCCAGGGTGGTACGCACATT
GTGACATGCCCAAATCAACAACACCCCTTTGAGGCAGCTTAGGAAAGCCCAGGGAGGACTGGGG
AGGTGAAAGCCTGGCTTGTCACTGGGTTCGCTTCCTTCCATTAAATCCAACTTCCTCCCACAAC
TGCTTGTCGACA

hide sequence

RefSeq Acc Id:

XM_006237220 ⟹ XP_006237282

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	156,211,381 - 156,248,491 (+)	NCBI
mRatBN7.2	4	154,539,246 - 154,577,784 (+)	NCBI
Rnor_6.0	4	153,874,942 - 153,912,185 (+)	NCBI
Rnor_5.0	4	220,962,968 - 221,000,197 (+)	NCBI

Sequence:

show sequence

TACAAGCACTACAGGGCGGTCTCCAGCCACGCTTTAAATAGCCAGCCCCTTCCCTGGCCCCCTG
GAGAATTCTCCGACAGGACCTCAGGCAGAAACTTCACCAAGGTGGGATGGATAACAGGGTCTCG
GGAACGACCAGTAATGGAGAGACAAAGCCAGTGTGTCCAGTCATGGAGAAGGTGGAGGAAGATG
GTACCTTGGAACGGGAGCAATGGACCAACAAGATGGAGTTCGTACTGTCAGTGGCGGGAGAGAT
CATTGGCTTAGGCAACGTCTGGAGGTTTCCCTATCTCTGCTACAAGAACGGGGGAGGTGCCTTC
TTTATTCCCTACCTCATCTTCCTATTTACCTGTGGCATTCCTGTCTTCTTCCTGGAGACAGCGC
TTGGCCAGTACACCAACCAGGGAGGCATCACAGCCTGGAGGAAAATCTGTCCCATCTTCGAGGG
CATCGGCTATGCCTCACAGATGATCGTCAGCCTTCTCAATGTCTACTACATCGTTGTCCTGGCC
TGGGCCCTCTTCTACCTCTTCAGCAGCTTCACCACTGACCTCCCCTGGGGTAGCTGCAGCCACG
AGTGGAATACAGAAAACTGTGTGGAGTTCCAGAAAACCAACAATTCCCTGAATGTGACTTCTGA
GAATGCCACATCCCCTGTCATCGAGTTCTGGGAGAGGCGAGTCCTGAAGATCTCAGATGGCATC
CAGCACCTGGGGTCCCTGCGCTGGGAGCTGGTCCTGTGCCTCCTGCTTGCCTGGATCATCTGCT
ATTTCTGCATCTGGAAAGGGGTCAAGTCCACAGGCAAGGTGGTGTACTTCACAGCTACTTTCCC
TTACCTCATGCTGGTGGTCCTGTTGATCCGAGGAGTAACACTGCCTGGAGCAGCCCAGGGAATT
CAGTTTTACCTGTACCCCAACATCACACGTCTGTGGGATCCCCAGGTGTGGATGGATGCGGGCA
CCCAGATCTTCTTCTCCTTTGCCATCTGCCTGGGGTGCCTCACGGCCCTGGGCAGCTACAACAA
GTACCACAACAACTGCTACAGGGACTGCGTCGCCCTTTGCATTCTCAACAGCAGCACCAGCTTC
GTGGCCGGGTTTGCCATCTTCTCCATCCTGGGCTTCATGTCTCAGGAGCAGGGCGTACCCATAT
CTGAGGTTGCTGAATCAGGCCCTGGCCTGGCATTCATCGCCTACCCTCGAGCTGTGGTGATGTT
ACCTTTCTCGCCTTTGTGGGCCTGCTGTTTCTTCTTCATGGTGGTTCTCCTGGGACTAGACAGC
CAGTTTGTGTGTGTAGAAAGCCTCGTGACAGCGCTGGTGGACATGTATCCCCGGGTGTTCCGTA
AGAAGAACCGGAGGGAGATTCTCATCCTCATCGTGTCTGTCGTCTCTTTCTTCATCGGGCTCAT
TATGANNNATTNCATTATGCTCACAGAGGGCGGCATGTACGTGTTCCAGCTCTTCGACTACTAT
GCGGCCAGTGGCATGTGTCTTCTCTTTGTGGCCATCTTTGAGTCCCTCTGTGTGGCTTGGGTTT
ACGGAGCCAGCCGCTTCTATGACAACATTGAAGATATGATTGGGTACAAGCCGTGGCCTCTTAT
CAAATACTGTTGGCTCTTTTTCACGCCAGCTGTGTGCCTGGCAACCTTCCTGTTCTCCCTGATC
AAATACACGCCACTGACCTACAACAAGAAGTACACATATCCATGGTGGGGGGATGCCCTGGGGT
GGCTCCTAGCTCTGTCCTCCATGGTCTGCATTCCTGCCTGGAGCATCTACAAGCTCAGGACTCT
CAAGGGCCCACTCAGAGAGAGACTTCGCCAGCTCGTGTGCCCGGCTGAAGACCTTCCCCAGAAG
AGCCAACCAGAGCTGACTTCTCCAGCGACACCGATGACGTCCCTCCTCAGGCTCACAGAACTGG
AGTCTAACTGCTAGGGACGAGGCCTTTGACACACCTGCGAGTCTGTCTGTGGGGACAGCTACAG
ACACAGAGGGCAGAACCACCCCTCCGTGCTGGGGCAGAGAGACAAAAGGGGGTATTTGGAAGCT
GCCTTCTGAACTGGGAACCTCCTATTTTGATACCCCTATTCCAGGGTGGTACGCACATTGTGAC
ATGCCCAAATCAACAACACCCCTTTGAGGCAGCTTAGGAAAGCCCAGGGAGGACTGGGGAGGTG
AAAGCCTGGCTTGTCACTGGGTTCGCTTCCTTCCATTAAATCCAACTTCCTCCCACAACTGCTT
GTCGACA

hide sequence

RefSeq Acc Id:

XM_006237221 ⟹ XP_006237283

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	156,211,467 - 156,248,491 (+)	NCBI
mRatBN7.2	4	154,539,337 - 154,577,784 (+)	NCBI
Rnor_6.0	4	153,874,946 - 153,912,185 (+)	NCBI
Rnor_5.0	4	220,962,968 - 221,000,197 (+)	NCBI

Sequence:

show sequence

AGCACTACAGGGCGGTCTCCAGCCACGCTTTAAATAGCCAGCCCCTTCCCTGGCCCCCTGGAGA
ATTCTCCGACAGGACCTCAGGCAGAAACTTCACCAAGGCAGCGAACACAAGCGCATCCGGTAGA
ACGGAAAGAACAGGAATTGCAGAGTGACTTCAAGTCTCCATACGATTTACTACCCGGGTGACGG
CAGTGACTCGACAGAGTAGCGGCTGCAGGTGGGATGGATAACAGGGTCTCGGGAACGACCAGTA
ATGGAGAGACAAAGCCAGTGTGTCCAGTCATGGAGAAGGTGGAGGAAGATGGTACCTTGGAACG
GGAGCAATGGACCAACAAGATGGAGTTCGTACTGTCAGTGGCGGGAGAGATCATTGGCTTAGGC
AACGTCTGGAGGTTTCCCTATCTCTGCTACAAGAACGGGGGAGGTGCCTTCTTTATTCCCTACC
TCATCTTCCTATTTACCTGTGGCATTCCTGTCTTCTTCCTGGAGACAGCGCTTGGCCAGTACAC
CAACCAGGGAGGCATCACAGCCTGGAGGAAAATCTGTCCCATCTTCGAGGGCATCGGCTATGCC
TCACAGATGATCGTCAGCCTTCTCAATGTCTACTACATCGTTGTCCTGGCCTGGGCCCTCTTCT
ACCTCTTCAGCAGCTTCACCACTGACCTCCCCTGGGGTAGCTGCAGCCACGAGTGGAATACAGA
AAACTGTGTGGAGTTCCAGAAAACCAACAATTCCCTGAATGTGACTTCTGAGAATGCCACATCC
CCTGTCATCGAGTTCTGGGAGAGGCGAGTCCTGAAGATCTCAGATGGCATCCAGCACCTGGGGT
CCCTGCGCTGGGAGCTGGTCCTGTGCCTCCTGCTTGCCTGGATCATCTGCTATTTCTGCATCTG
GAAAGGGGTCAAGTCCACAGGCAAGGTGGTGTACTTCACAGCTACTTTCCCTTACCTCATGCTG
GTGGTCCTGTTGATCCGAGGAGTAACACTGCCTGGAGCAGCCCAGGGAATTCAGTTTTACCTGT
ACCCCAACATCACACGTCTGTGGGATCCCCAGGTGTGGATGGATGCGGGCACCCAGATCTTCTT
CTCCTTTGCCATCTGCCTGGGGTGCCTCACGGCCCTGGGCAGCTACAACAAGTACCACAACAAC
TGCTACAGGGACTGCGTCGCCCTTTGCATTCTCAACAGCAGCACCAGCTTCGTGGCCGGGTTTG
CCATCTTCTCCATCCTGGGCTTCATGTCTCAGGAGCAGGGCGTACCCATATCTGAGGTTGCTGA
ATCAGGCCCTGGCCTGGCATTCATCGCCTACCCTCGAGCTGTGGTGATGTTACCTTTCTCGCCT
TTGTGGGCCTGCTGTTTCTTCTTCATGGTGGTTCTCCTGGGACTAGACAGCCAGTTTGTGTGTG
TAGAAAGCCTCGTGACAGCGCTGGTGGACATGTATCCCCGGGTGTTCCGTAAGAAGAACCGGAG
GGAGATTCTCATCCTCATCGTGTCTGTCGTCTCTTTCTTCATCGGGCTCATTATGANNNATTNC
ATTATGCTCACAGAGGGCGGCATGTACGTGTTCCAGCTCTTCGACTACTATGCGGCCAGTGGCA
TGTGTCTTCTCTTTGTGGCCATCTTTGAGTCCCTCTGTGTGGCTTGGGTTTACGGAGCCAGCCG
CTTCTATGACAACATTGAAGATATGATTGGGTACAAGCCGTGGCCTCTTATCAAATACTGTTGG
CTCTTTTTCACGCCAGCTGTGTGCCTGGCAACCTTCCTGTTCTCCCTGATCAAATACACGCCAC
TGACCTACAACAAGAAGTACACATATCCATGGTGGGGGGATGCCCTGGGGTGGCTCCTAGCTCT
GTCCTCCATGGTCTGCATTCCTGCCTGGAGCATCTACAAGCTCAGGACTCTCAAGGGCCCACTC
AGAGAGAGACTTCGCCAGCTCGTGTGCCCGGCTGAAGACCTTCCCCAGAAGAGCCAACCAGAGC
TGACTTCTCCAGCGACACCGATGACGTCCCTCCTCAGGCTCACAGAACTGGAGTCTAACTGCTA
GGGACGAGGCCTTTGACACACCTGCGAGTCTGTCTGTGGGGACAGCTACAGACACAGAGGGCAG
AACCACCCCTCCGTGCTGGGGCAGAGAGACAAAAGGGGGTATTTGGAAGCTGCCTTCTGAACTG
GGAACCTCCTATTTTGATACCCCTATTCCAGGGTGGTACGCACATTGTGACATGCCCAAATCAA
CAACACCCCTTTGAGGCAGCTTAGGAAAGCCCAGGGAGGACTGGGGAGGTGAAAGCCTGGCTTG
TCACTGGGTTCGCTTCCTTCCATTAAATCCAACTTCCTCCCACAACTGCTTGTCGACA

hide sequence

RefSeq Acc Id:

XM_006237222 ⟹ XP_006237284

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	156,216,141 - 156,248,491 (+)	NCBI
mRatBN7.2	4	154,544,000 - 154,577,784 (+)	NCBI
Rnor_6.0	4	153,879,688 - 153,912,172 (+)	NCBI
Rnor_5.0	4	220,962,968 - 221,000,197 (+)	NCBI

Sequence:

show sequence

CTACTGGGTGAATTAGTGAAAAGCTCCTTTGCCAAAGACAGATGAGGAACCCAGAGCCTTCGCT
TTTCTTTTTCTTGCTGTGCTGGGAAGGATGCCCGGGTGCTCCAGGGAAGCATCATGCTTAGTAA
TGTGCTCTATCAACCTGCTTCTGGACTCTTTCTGTGCCTTCTTTATTCCCTACCTCATCTTCCT
ATTTACCTGTGGCATTCCTGTCTTCTTCCTGGAGACAGCGCTTGGCCAGTACACCAACCAGGGA
GGCATCACAGCCTGGAGGAAAATCTGTCCCATCTTCGAGGCTTCAGTCCCCTCTCCAGGCATCG
GCTATGCCTCACAGATGATCGTCAGCCTTCTCAATGTCTACTACATCGTTGTCCTGGCCTGGGC
CCTCTTCTACCTCTTCAGCAGCTTCACCACTGACCTCCCCTGGGGTAGCTGCAGCCACGAGTGG
AATACAGAAAACTGTGTGGAGTTCCAGAAAACCAACAATTCCCTGAATGTGACTTCTGAGAATG
CCACATCCCCTGTCATCGAGTTCTGGGAGAGGCGAGTCCTGAAGATCTCAGATGGCATCCAGCA
CCTGGGGTCCCTGCGCTGGGAGCTGGTCCTGTGCCTCCTGCTTGCCTGGATCATCTGCTATTTC
TGCATCTGGAAAGGGGTCAAGTCCACAGGCAAGGTGGTGTACTTCACAGCTACTTTCCCTTACC
TCATGCTGGTGGTCCTGTTGATCCGAGGAGTAACACTGCCTGGAGCAGCCCAGGGAATTCAGTT
TTACCTGTACCCCAACATCACACGTCTGTGGGATCCCCAGGTGTGGATGGATGCGGGCACCCAG
ATCTTCTTCTCCTTTGCCATCTGCCTGGGGTGCCTCACGGCCCTGGGCAGCTACAACAAGTACC
ACAACAACTGCTACAGGGACTGCGTCGCCCTTTGCATTCTCAACAGCAGCACCAGCTTCGTGGC
CGGGTTTGCCATCTTCTCCATCCTGGGCTTCATGTCTCAGGAGCAGGGCGTACCCATATCTGAG
GTTGCTGAATCAGGCCCTGGCCTGGCATTCATCGCCTACCCTCGAGCTGTGGTGATGTTACCTT
TCTCGCCTTTGTGGGCCTGCTGTTTCTTCTTCATGGTGGTTCTCCTGGGACTAGACAGCCAGTT
TGTGTGTGTAGAAAGCCTCGTGACAGCGCTGGTGGACATGTATCCCCGGGTGTTCCGTAAGAAG
AACCGGAGGGAGATTCTCATCCTCATCGTGTCTGTCGTCTCTTTCTTCATCGGGCTCATTATGA
NNNATTNCATTATGCTCACAGAGGGCGGCATGTACGTGTTCCAGCTCTTCGACTACTATGCGGC
CAGTGGCATGTGTCTTCTCTTTGTGGCCATCTTTGAGTCCCTCTGTGTGGCTTGGGTTTACGGA
GCCAGCCGCTTCTATGACAACATTGAAGATATGATTGGGTACAAGCCGTGGCCTCTTATCAAAT
ACTGTTGGCTCTTTTTCACGCCAGCTGTGTGCCTGGCAACCTTCCTGTTCTCCCTGATCAAATA
CACGCCACTGACCTACAACAAGAAGTACACATATCCATGGTGGGGGGATGCCCTGGGGTGGCTC
CTAGCTCTGTCCTCCATGGTCTGCATTCCTGCCTGGAGCATCTACAAGCTCAGGACTCTCAAGG
GCCCACTCAGAGAGAGACTTCGCCAGCTCGTGTGCCCGGCTGAAGACCTTCCCCAGAAGAGCCA
ACCAGAGCTGACTTCTCCAGCGACACCGATGACGTCCCTCCTCAGGCTCACAGAACTGGAGTCT
AACTGCTAGGGACGAGGCCTTTGACACACCTGCGAGTCTGTCTGTGGGGACAGCTACAGACACA
GAGGGCAGAACCACCCCTCCGTGCTGGGGCAGAGAGACAAAAGGGGGTATTTGGAAGCTGCCTT
CTGAACTGGGAACCTCCTATTTTGATACCCCTATTCCAGGGTGGTACGCACATTGTGACATGCC
CAAATCAACAACACCCCTTTGAGGCAGCTTAGGAAAGCCCAGGGAGGACTGGGGAGGTGAAAGC
CTGGCTTGTCACTGGGTTCGCTTCCTTCCATTAAATCCAACTTCCTCCCACAA

hide sequence

RefSeq Acc Id:

XM_006237223 ⟹ XP_006237285

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	156,214,261 - 156,248,491 (+)	NCBI
mRatBN7.2	4	154,542,114 - 154,577,784 (+)	NCBI
Rnor_6.0	4	153,877,735 - 153,912,185 (+)	NCBI
Rnor_5.0	4	220,962,968 - 221,000,197 (+)	NCBI

Sequence:

show sequence

GTCTCCCCAAGAAGGAGAATTCTTCTGTCTGCTACACTTACTGTCCCTCTGGGAAGTCCTATAC
ATAGAAGGCTGGAGTTGAAGGACCCTGACAGGTCATTGAGGCCACTCTGCAGGAGATTGAGACT
TAGACAACCCGTGTGGGTGCCCTAGGGCTTTCTCCCTTAGAAGCATGAGTACAGGCTCAGATCC
AGCTGGATCAGGCCGTGGATTCTGCCTCCGCTCTTAACTCTGTGATCTTGGTCAAGTTCCAGAA
GCCCCCAGAGTCTCAATGGTTGCTCCTGTAAATCAAGATAGCAATACCTGTTTTTCAAGGTTCT
AGTAAGGATCGGCAACACTACTGATAAAGTGCTTAATGAATGGGAGCTGCAGTGACGCGGCTGC
TGACACGGAACTCTCTTGGGATCTTGGGATTCTTCAGCTTTGGCCTTGTGTCACCCCCCCACGC
CCCCACAAGCGGGTACCATGACATTCCCAATGCCCTCTGTTTCCCAACTCTCACTAGTATTATA
ATCTTCAACCTTCATGGCCTTCCTTTAAAAGTTTCCCTCTCTGTCTGTCTTTCTTTGTCTCTGT
CTGTCTGTCTGTCTGTCTGTCTTTGTTCTCTCTGTGCGTGTTCATAGGCACACACAAATGCTAG
CTTCTTATTTTCCTTCCCAGTCTTCTGGGGTAATTGCACTAATCCACATTTAGGGAATTTCCAC
GCCCCTGTGGTGAGCCTTGGACAGAGTCCCCAGATACTAAAGGGCTTAGAGTTGACCTGTGGGT
TAGGAAACCATTCTGTTCTGTTGATGGATAAAGCTTCCAAGGATTGGAGGTCATGGGTCTGTTT
TTGTAACGAGGCTATATCCTGAGCTAGAGGAATGCAGAGCCTGGAGGTGCCTTCTTTATTCCCT
ACCTCATCTTCCTATTTACCTGTGGCATTCCTGTCTTCTTCCTGGAGACAGCGCTTGGCCAGTA
CACCAACCAGGGAGGCATCACAGCCTGGAGGAAAATCTGTCCCATCTTCGAGGGCATCGGCTAT
GCCTCACAGATGATCGTCAGCCTTCTCAATGTCTACTACATCGTTGTCCTGGCCTGGGCCCTCT
TCTACCTCTTCAGCAGCTTCACCACTGACCTCCCCTGGGGTAGCTGCAGCCACGAGTGGAATAC
AGAAAACTGTGTGGAGTTCCAGAAAACCAACAATTCCCTGAATGTGACTTCTGAGAATGCCACA
TCCCCTGTCATCGAGTTCTGGGAGAGGCGAGTCCTGAAGATCTCAGATGGCATCCAGCACCTGG
GGTCCCTGCGCTGGGAGCTGGTCCTGTGCCTCCTGCTTGCCTGGATCATCTGCTATTTCTGCAT
CTGGAAAGGGGTCAAGTCCACAGGCAAGGTGGTGTACTTCACAGCTACTTTCCCTTACCTCATG
CTGGTGGTCCTGTTGATCCGAGGAGTAACACTGCCTGGAGCAGCCCAGGGAATTCAGTTTTACC
TGTACCCCAACATCACACGTCTGTGGGATCCCCAGGTGTGGATGGATGCGGGCACCCAGATCTT
CTTCTCCTTTGCCATCTGCCTGGGGTGCCTCACGGCCCTGGGCAGCTACAACAAGTACCACAAC
AACTGCTACAGGGACTGCGTCGCCCTTTGCATTCTCAACAGCAGCACCAGCTTCGTGGCCGGGT
TTGCCATCTTCTCCATCCTGGGCTTCATGTCTCAGGAGCAGGGCGTACCCATATCTGAGGTTGC
TGAATCAGGCCCTGGCCTGGCATTCATCGCCTACCCTCGAGCTGTGGTGATGTTACCTTTCTCG
CCTTTGTGGGCCTGCTGTTTCTTCTTCATGGTGGTTCTCCTGGGACTAGACAGCCAGTTTGTGT
GTGTAGAAAGCCTCGTGACAGCGCTGGTGGACATGTATCCCCGGGTGTTCCGTAAGAAGAACCG
GAGGGAGATTCTCATCCTCATCGTGTCTGTCGTCTCTTTCTTCATCGGGCTCATTATGANNNAT
TNCATTATGCTCACAGAGGGCGGCATGTACGTGTTCCAGCTCTTCGACTACTATGCGGCCAGTG
GCATGTGTCTTCTCTTTGTGGCCATCTTTGAGTCCCTCTGTGTGGCTTGGGTTTACGGAGCCAG
CCGCTTCTATGACAACATTGAAGATATGATTGGGTACAAGCCGTGGCCTCTTATCAAATACTGT
TGGCTCTTTTTCACGCCAGCTGTGTGCCTGGCAACCTTCCTGTTCTCCCTGATCAAATACACGC
CACTGACCTACAACAAGAAGTACACATATCCATGGTGGGGGGATGCCCTGGGGTGGCTCCTAGC
TCTGTCCTCCATGGTCTGCATTCCTGCCTGGAGCATCTACAAGCTCAGGACTCTCAAGGGCCCA
CTCAGAGAGAGACTTCGCCAGCTCGTGTGCCCGGCTGAAGACCTTCCCCAGAAGAGCCAACCAG
AGCTGACTTCTCCAGCGACACCGATGACGTCCCTCCTCAGGCTCACAGAACTGGAGTCTAACTG
CTAGGGACGAGGCCTTTGACACACCTGCGAGTCTGTCTGTGGGGACAGCTACAGACACAGAGGG
CAGAACCACCCCTCCGTGCTGGGGCAGAGAGACAAAAGGGGGTATTTGGAAGCTGCCTTCTGAA
CTGGGAACCTCCTATTTTGATACCCCTATTCCAGGGTGGTACGCACATTGTGACATGCCCAAAT
CAACAACACCCCTTTGAGGCAGCTTAGGAAAGCCCAGGGAGGACTGGGGAGGTGAAAGCCTGGC
TTGTCACTGGGTTCGCTTCCTTCCATTAAATCCAACTTCCTCCCACAACTGCTTGTCGACA

hide sequence

RefSeq Acc Id:

XM_039106983 ⟹ XP_038962911

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	156,238,805 - 156,248,491 (+)	NCBI
mRatBN7.2	4	154,568,052 - 154,577,784 (+)	NCBI

RefSeq Acc Id:

XM_063285457 ⟹ XP_063141527

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	156,216,169 - 156,248,491 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001426543	(Get FASTA)	NCBI Sequence Viewer
	NP_001426544	(Get FASTA)	NCBI Sequence Viewer
	NP_001426545	(Get FASTA)	NCBI Sequence Viewer
	NP_598307	(Get FASTA)	NCBI Sequence Viewer
	XP_006237280	(Get FASTA)	NCBI Sequence Viewer
	XP_006237281	(Get FASTA)	NCBI Sequence Viewer
	XP_006237282	(Get FASTA)	NCBI Sequence Viewer
	XP_006237283	(Get FASTA)	NCBI Sequence Viewer
	XP_006237284	(Get FASTA)	NCBI Sequence Viewer
	XP_006237285	(Get FASTA)	NCBI Sequence Viewer
	XP_038962911	(Get FASTA)	NCBI Sequence Viewer
	XP_063141527	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAA40602	(Get FASTA)	NCBI Sequence Viewer
	EDM02014	(Get FASTA)	NCBI Sequence Viewer
	EDM02015	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000018083
	ENSRNOP00000018083.3
	ENSRNOP00000071638
GenBank Protein	P31646	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_598307 ⟸ NM_133623

- UniProtKB:

P31646 (UniProtKB/Swiss-Prot), A6ILC5 (UniProtKB/TrEMBL), R9PXV0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDNRVSGTTSNGETKPVCPVMEKVEEDGTLEREQWTNKMEFVLSVAGEIIGLGNVWRFPYLCYK
NGGGAFFIPYLIFLFTCGIPVFFLETALGQYTNQGGITAWRKICPIFEGIGYASQMIVSLLNVY
YIVVLAWALFYLFSSFTTDLPWGSCSHEWNTENCVEFQKTNNSLNVTSENATSPVIEFWERRVL
KISDGIQHLGSLRWELVLCLLLAWIICYFCIWKGVKSTGKVVYFTATFPYLMLVVLLIRGVTLP
GAAQGIQFYLYPNITRLWDPQVWMDAGTQIFFSFAICLGCLTALGSYNKYHNNCYRDCVALCIL
NSSTSFVAGFAIFSILGFMSQEQGVPISEVAESGPGLAFIAYPRAVVMLPFSPLWACCFFFMVV
LLGLDSQFVCVESLVTALVDMYPRVFRKKNRREILILIVSVVSFFIGLIMLTEGGMYVFQLFDY
YAASGMCLLFVAIFESLCVAWVYGASRFYDNIEDMIGYKPWPLIKYCWLFFTPAVCLATFLFSL
IKYTPLTYNKKYTYPWWGDALGWLLALSSMVCIPAWSIYKLRTLKGPLRERLRQLVCPAEDLPQ
KSQPELTSPATPMTSLLRLTELESNC

hide sequence

RefSeq Acc Id:	XP_006237280 ⟸ XM_006237218
- Peptide Label:	isoform X1
- UniProtKB:	R9PXV0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDNRVSGTTSNGETKPVCPVMEKVEEDGTLEREQWTNKMEFVLSVAGEIIGLGNVWRFPYLCYK NGGGAFFIPYLIFLFTCGIPVFFLETALGQYTNQGGITAWRKICPIFEASVPSPGIGYASQMIV SLLNVYYIVVLAWALFYLFSSFTTDLPWGSCSHEWNTENCVEFQKTNNSLNVTSENATSPVIEF WERRVLKISDGIQHLGSLRWELVLCLLLAWIICYFCIWKGVKSTGKVVYFTATFPYLMLVVLLI RGVTLPGAAQGIQFYLYPNITRLWDPQVWMDAGTQIFFSFAICLGCLTALGSYNKYHNNCYRDC VALCILNSSTSFVAGFAIFSILGFMSQEQGVPISEVAESGPGLAFIAYPRAVVMLPFSPLWACC FFFMVVLLGLDSQFVCVESLVTALVDMYPRVFRKKNRREILILIVSVVSFFIGLIMXXXIMLTE GGMYVFQLFDYYAASGMCLLFVAIFESLCVAWVYGASRFYDNIEDMIGYKPWPLIKYCWLFFTP AVCLATFLFSLIKYTPLTYNKKYTYPWWGDALGWLLALSSMVCIPAWSIYKLRTLKGPLRERLR QLVCPAEDLPQKSQPELTSPATPMTSLLRLTELESNC hide sequence

RefSeq Acc Id:

XP_006237282 ⟸ XM_006237220

- Peptide Label:

isoform X2

- Sequence:

show sequence

MDNRVSGTTSNGETKPVCPVMEKVEEDGTLEREQWTNKMEFVLSVAGEIIGLGNVWRFPYLCYK
NGGGAFFIPYLIFLFTCGIPVFFLETALGQYTNQGGITAWRKICPIFEGIGYASQMIVSLLNVY
YIVVLAWALFYLFSSFTTDLPWGSCSHEWNTENCVEFQKTNNSLNVTSENATSPVIEFWERRVL
KISDGIQHLGSLRWELVLCLLLAWIICYFCIWKGVKSTGKVVYFTATFPYLMLVVLLIRGVTLP
GAAQGIQFYLYPNITRLWDPQVWMDAGTQIFFSFAICLGCLTALGSYNKYHNNCYRDCVALCIL
NSSTSFVAGFAIFSILGFMSQEQGVPISEVAESGPGLAFIAYPRAVVMLPFSPLWACCFFFMVV
LLGLDSQFVCVESLVTALVDMYPRVFRKKNRREILILIVSVVSFFIGLIMXXXIMLTEGGMYVF
QLFDYYAASGMCLLFVAIFESLCVAWVYGASRFYDNIEDMIGYKPWPLIKYCWLFFTPAVCLAT
FLFSLIKYTPLTYNKKYTYPWWGDALGWLLALSSMVCIPAWSIYKLRTLKGPLRERLRQLVCPA
EDLPQKSQPELTSPATPMTSLLRLTELESNC

hide sequence

RefSeq Acc Id:	XP_006237281 ⟸ XM_006237219
- Peptide Label:	isoform X1
- UniProtKB:	R9PXV0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDNRVSGTTSNGETKPVCPVMEKVEEDGTLEREQWTNKMEFVLSVAGEIIGLGNVWRFPYLCYK NGGGAFFIPYLIFLFTCGIPVFFLETALGQYTNQGGITAWRKICPIFEASVPSPGIGYASQMIV SLLNVYYIVVLAWALFYLFSSFTTDLPWGSCSHEWNTENCVEFQKTNNSLNVTSENATSPVIEF WERRVLKISDGIQHLGSLRWELVLCLLLAWIICYFCIWKGVKSTGKVVYFTATFPYLMLVVLLI RGVTLPGAAQGIQFYLYPNITRLWDPQVWMDAGTQIFFSFAICLGCLTALGSYNKYHNNCYRDC VALCILNSSTSFVAGFAIFSILGFMSQEQGVPISEVAESGPGLAFIAYPRAVVMLPFSPLWACC FFFMVVLLGLDSQFVCVESLVTALVDMYPRVFRKKNRREILILIVSVVSFFIGLIMXXXIMLTE GGMYVFQLFDYYAASGMCLLFVAIFESLCVAWVYGASRFYDNIEDMIGYKPWPLIKYCWLFFTP AVCLATFLFSLIKYTPLTYNKKYTYPWWGDALGWLLALSSMVCIPAWSIYKLRTLKGPLRERLR QLVCPAEDLPQKSQPELTSPATPMTSLLRLTELESNC hide sequence

RefSeq Acc Id:

XP_006237283 ⟸ XM_006237221

- Peptide Label:

isoform X2

- Sequence:

show sequence

MDNRVSGTTSNGETKPVCPVMEKVEEDGTLEREQWTNKMEFVLSVAGEIIGLGNVWRFPYLCYK
NGGGAFFIPYLIFLFTCGIPVFFLETALGQYTNQGGITAWRKICPIFEGIGYASQMIVSLLNVY
YIVVLAWALFYLFSSFTTDLPWGSCSHEWNTENCVEFQKTNNSLNVTSENATSPVIEFWERRVL
KISDGIQHLGSLRWELVLCLLLAWIICYFCIWKGVKSTGKVVYFTATFPYLMLVVLLIRGVTLP
GAAQGIQFYLYPNITRLWDPQVWMDAGTQIFFSFAICLGCLTALGSYNKYHNNCYRDCVALCIL
NSSTSFVAGFAIFSILGFMSQEQGVPISEVAESGPGLAFIAYPRAVVMLPFSPLWACCFFFMVV
LLGLDSQFVCVESLVTALVDMYPRVFRKKNRREILILIVSVVSFFIGLIMXXXIMLTEGGMYVF
QLFDYYAASGMCLLFVAIFESLCVAWVYGASRFYDNIEDMIGYKPWPLIKYCWLFFTPAVCLAT
FLFSLIKYTPLTYNKKYTYPWWGDALGWLLALSSMVCIPAWSIYKLRTLKGPLRERLRQLVCPA
EDLPQKSQPELTSPATPMTSLLRLTELESNC

hide sequence

RefSeq Acc Id:

XP_006237285 ⟸ XM_006237223

- Peptide Label:

isoform X5

- Sequence:

show sequence

MIVSLLNVYYIVVLAWALFYLFSSFTTDLPWGSCSHEWNTENCVEFQKTNNSLNVTSENATSPV
IEFWERRVLKISDGIQHLGSLRWELVLCLLLAWIICYFCIWKGVKSTGKVVYFTATFPYLMLVV
LLIRGVTLPGAAQGIQFYLYPNITRLWDPQVWMDAGTQIFFSFAICLGCLTALGSYNKYHNNCY
RDCVALCILNSSTSFVAGFAIFSILGFMSQEQGVPISEVAESGPGLAFIAYPRAVVMLPFSPLW
ACCFFFMVVLLGLDSQFVCVESLVTALVDMYPRVFRKKNRREILILIVSVVSFFIGLIMXXXIM
LTEGGMYVFQLFDYYAASGMCLLFVAIFESLCVAWVYGASRFYDNIEDMIGYKPWPLIKYCWLF
FTPAVCLATFLFSLIKYTPLTYNKKYTYPWWGDALGWLLALSSMVCIPAWSIYKLRTLKGPLRE
RLRQLVCPAEDLPQKSQPELTSPATPMTSLLRLTELESNC

hide sequence

RefSeq Acc Id:	XP_006237284 ⟸ XM_006237222
- Peptide Label:	isoform X3
- UniProtKB:	R9PXV0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPGCSREASCLVMCSINLLLDSFCAFFIPYLIFLFTCGIPVFFLETALGQYTNQGGITAWRKIC PIFEASVPSPGIGYASQMIVSLLNVYYIVVLAWALFYLFSSFTTDLPWGSCSHEWNTENCVEFQ KTNNSLNVTSENATSPVIEFWERRVLKISDGIQHLGSLRWELVLCLLLAWIICYFCIWKGVKST GKVVYFTATFPYLMLVVLLIRGVTLPGAAQGIQFYLYPNITRLWDPQVWMDAGTQIFFSFAICL GCLTALGSYNKYHNNCYRDCVALCILNSSTSFVAGFAIFSILGFMSQEQGVPISEVAESGPGLA FIAYPRAVVMLPFSPLWACCFFFMVVLLGLDSQFVCVESLVTALVDMYPRVFRKKNRREILILI VSVVSFFIGLIMXXXIMLTEGGMYVFQLFDYYAASGMCLLFVAIFESLCVAWVYGASRFYDNIE DMIGYKPWPLIKYCWLFFTPAVCLATFLFSLIKYTPLTYNKKYTYPWWGDALGWLLALSSMVCI PAWSIYKLRTLKGPLRERLRQLVCPAEDLPQKSQPELTSPATPMTSLLRLTELESNC hide sequence

Ensembl Acc Id:

ENSRNOP00000071638 ⟸ ENSRNOT00000079744

Ensembl Acc Id:

ENSRNOP00000018083 ⟸ ENSRNOT00000018083

RefSeq Acc Id:	XP_038962911 ⟸ XM_039106983
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063141527 ⟸ XM_063285457
- Peptide Label:	isoform X4

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P31646-F1-model_v2	AlphaFold	P31646	1-602	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693364

Promoter ID:

EPDNEW_R3888

Type:

single initiation site

Name:

Slc6a13_1

Description:

solute carrier family 6 member 13

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	153,875,005 - 153,875,065	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620788	AgrOrtholog
BioCyc Gene	G2FUF-43178	BioCyc
Ensembl Genes	ENSRNOG00000012876	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000018083	ENTREZGENE
	ENSRNOT00000018083.4	UniProtKB/Swiss-Prot
	ENSRNOT00000079744	ENTREZGENE
InterPro	Na/ntran_symport	UniProtKB/Swiss-Prot
	Na/ntran_symport_GABA_GAT2	UniProtKB/Swiss-Prot
	SNS_sf	UniProtKB/Swiss-Prot
KEGG Report	rno:171163	UniProtKB/Swiss-Prot
NCBI Gene	171163	ENTREZGENE
PANTHER	PTHR11616	UniProtKB/Swiss-Prot
	SODIUM- AND CHLORIDE-DEPENDENT GABA TRANSPORTER 2	UniProtKB/Swiss-Prot
Pfam	SNF	UniProtKB/Swiss-Prot
PhenoGen	Slc6a13	PhenoGen
PRINTS	GAT2TRNSPORT	UniProtKB/Swiss-Prot
	NANEUSMPORT	UniProtKB/Swiss-Prot
PROSITE	NA_NEUROTRAN_SYMP_1	UniProtKB/Swiss-Prot
	NA_NEUROTRAN_SYMP_2	UniProtKB/Swiss-Prot
	NA_NEUROTRAN_SYMP_3	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000012876	RatGTEx
Superfamily-SCOP	SSF161070	UniProtKB/Swiss-Prot
UniProt	A0A0G2K0Z3	ENTREZGENE, UniProtKB/TrEMBL
	A6ILC5	ENTREZGENE, UniProtKB/TrEMBL
	P31646	ENTREZGENE
	R9PXV0	ENTREZGENE, UniProtKB/TrEMBL
	S6A13_RAT	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-03-09	Slc6a13	solute carrier family 6 member 13	Slc6a13	solute carrier family 6 (neurotransmitter transporter), member 13	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-08-02	Slc6a13	solute carrier family 6 (neurotransmitter transporter), member 13	Slc6a13	solute carrier family 6 (neurotransmitter transporter, GABA), member 13	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2004-09-10	Slc6a13	solute carrier family 6 (neurotransmitter transporter, GABA), member 13			Symbol and Name status set to approved	1299863	APPROVED
2002-08-07	Slc6a13	solute carrier family 6 (neurotransmitter transporter, GABA), member 13			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_expression	protein found in glial cells in the gastrointestinal tract	730059
gene_expression	mRNA expressed in brain, retina, and some peripheral tissues	727560
gene_protein	Km for GABA approximately 10 microM	727560
gene_protein	predicted protein contains 602 amino acid residues	727560

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar