Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Pdzrn3 (PDZ domain containing RING finger 3) Rattus norvegicus
Symbol: Pdzrn3
Name: PDZ domain containing RING finger 3
RGD ID: 1305250
Description: Predicted to have ubiquitin protein ligase activity. Predicted to be involved in neuromuscular junction development and protein ubiquitination. Predicted to localize to neuromuscular junction. Orthologous to human PDZRN3 (PDZ domain containing ring finger 3); INTERACTS WITH 1,2-dimethylhydrazine; 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: E3 ubiquitin-protein ligase PDZRN3; LOC312607; PDZ domain-containing RING finger protein 3; RING-type E3 ubiquitin transferase PDZRN3; semaphorin cytoplasmic domain-associated protein 3
Homo sapiens (human) : PDZRN3 (PDZ domain containing ring finger 3)  HGNC  Alliance
Mus musculus (house mouse) : Pdzrn3 (PDZ domain containing RING finger 3)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Pdzrn3 (PDZ domain containing ring finger 3)
Pan paniscus (bonobo/pygmy chimpanzee) : PDZRN3 (PDZ domain containing ring finger 3)
Canis lupus familiaris (dog) : PDZRN3 (PDZ domain containing ring finger 3)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Pdzrn3 (PDZ domain containing ring finger 3)
Sus scrofa (pig) : PDZRN3 (PDZ domain containing ring finger 3)
Chlorocebus sabaeus (African green monkey) : PDZRN3 (PDZ domain containing ring finger 3)
Heterocephalus glaber (naked mole-rat) : Pdzrn3 (PDZ domain containing ring finger 3)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Rat AssemblyChrPosition (strand)SourceGenome Browsers
Rnor_6.04133,717,139 - 133,951,282 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4133,717,139 - 133,951,264 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04198,194,465 - 198,429,457 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44136,044,210 - 136,254,969 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14136,260,810 - 136,311,636 (-)NCBI
Celera4122,607,053 - 122,831,741 (-)NCBICelera
Cytogenetic Map4q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)

Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated


Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status


RNA-SEQ Expression


Nucleotide Sequences
Protein Sequences

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
More on Pdzrn3
Alliance Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1305250
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE


RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.