Lrrc23 (leucine rich repeat containing 23) - Rat Genome Database

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Gene: Lrrc23 (leucine rich repeat containing 23) Rattus norvegicus
Analyze
Symbol: Lrrc23
Name: leucine rich repeat containing 23
RGD ID: 1304779
Description: Predicted to be active in cytosol. Orthologous to human LRRC23 (leucine rich repeat containing 23); INTERACTS WITH 1,3-dinitrobenzene; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: leucine rich protein, B7; leucine rich protein, B7 gene; leucine-rich repeat-containing protein 23; leucine-rich repeat-containing protein 23-like; LOC100911585; LOC312707; Lrpb7; neuron-specific enolase
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24157,581,285 - 157,592,188 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl4157,581,291 - 157,591,860 (-)Ensembl
Rnor_6.04157,294,386 - 157,304,590 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4157,294,287 - 157,304,653 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl920,241,062 - 20,251,319 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04224,311,985 - 224,322,180 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44160,899,357 - 160,909,547 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14161,144,293 - 161,154,430 (-)NCBI
Celera4146,319,344 - 146,329,515 (-)NCBICelera
Cytogenetic Map4q42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:2450052   PMID:18569155   PMID:27914912  


Genomics

Comparative Map Data
Lrrc23
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24157,581,285 - 157,592,188 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl4157,581,291 - 157,591,860 (-)Ensembl
Rnor_6.04157,294,386 - 157,304,590 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4157,294,287 - 157,304,653 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl920,241,062 - 20,251,319 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04224,311,985 - 224,322,180 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44160,899,357 - 160,909,547 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14161,144,293 - 161,154,430 (-)NCBI
Celera4146,319,344 - 146,329,515 (-)NCBICelera
Cytogenetic Map4q42NCBI
LRRC23
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38126,904,822 - 6,914,229 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl126,873,569 - 6,914,241 (+)EnsemblGRCh38hg38GRCh38
GRCh37127,013,986 - 7,023,393 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36126,884,213 - 6,893,667 (+)NCBINCBI36hg18NCBI36
Celera128,632,507 - 8,642,019 (+)NCBI
Cytogenetic Map12p13.31NCBI
HuRef126,869,450 - 6,879,255 (+)NCBIHuRef
CHM1_1127,012,914 - 7,022,288 (+)NCBICHM1_1
T2T-CHM13v2.0126,915,432 - 6,925,409 (+)NCBI
Lrrc23
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396124,746,832 - 124,757,411 (-)NCBIGRCm39mm39
GRCm39 Ensembl6124,746,826 - 124,756,690 (-)Ensembl
GRCm386124,769,869 - 124,780,438 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6124,769,863 - 124,779,727 (-)EnsemblGRCm38mm10GRCm38
MGSCv376124,719,881 - 124,729,736 (-)NCBIGRCm37mm9NCBIm37
MGSCv366124,735,482 - 124,745,337 (-)NCBImm8
Celera6126,451,592 - 126,461,382 (-)NCBICelera
Cytogenetic Map6F2NCBI
cM Map659.17NCBI
Lrrc23
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554134,491,573 - 4,498,283 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554134,491,443 - 4,498,283 (+)NCBIChiLan1.0ChiLan1.0
LRRC23
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1126,948,809 - 6,958,880 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl126,948,809 - 6,958,880 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0127,033,989 - 7,043,704 (+)NCBIMhudiblu_PPA_v0panPan3
LRRC23
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12738,128,954 - 38,144,481 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2738,129,203 - 38,134,676 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha278,472,138 - 8,487,809 (+)NCBI
ROS_Cfam_1.02738,481,520 - 38,497,263 (-)NCBI
ROS_Cfam_1.0 Ensembl2738,482,325 - 38,487,098 (-)Ensembl
UMICH_Zoey_3.12738,355,913 - 38,371,585 (-)NCBI
UNSW_CanFamBas_1.02738,396,892 - 38,412,613 (-)NCBI
UU_Cfam_GSD_1.0277,950,869 - 7,966,533 (+)NCBI
Lrrc23
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945102,246,458 - 102,255,711 (-)NCBI
SpeTri2.0NW_004936709914,077 - 923,169 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LRRC23
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl563,809,546 - 63,817,225 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1563,809,298 - 63,836,629 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2566,246,067 - 66,272,165 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LRRC23
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1116,922,612 - 6,946,786 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl116,935,831 - 6,945,300 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660631,272,492 - 1,282,137 (-)NCBIVero_WHO_p1.0
Lrrc23
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248603,547,179 - 3,553,849 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046248603,547,199 - 3,553,763 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
D4Wox50  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24157,583,043 - 157,583,307 (+)MAPPERmRatBN7.2
mRatBN7.24157,583,043 - 157,583,307 (-)MAPPERmRatBN7.2
Rnor_6.04157,296,145 - 157,296,408NCBIRnor6.0
Rnor_6.0920,249,249 - 20,249,512NCBIRnor6.0
Rnor_5.0919,125,225 - 19,125,488UniSTSRnor5.0
Rnor_5.04224,313,741 - 224,314,004UniSTSRnor5.0
RGSC_v3.44160,901,111 - 160,901,374UniSTSRGSC3.4
Celera4146,321,098 - 146,321,358UniSTS
Cytogenetic Map4q42UniSTS
BE103187  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24157,581,316 - 157,581,494 (-)MAPPERmRatBN7.2
mRatBN7.24157,581,316 - 157,581,494 (+)MAPPERmRatBN7.2
Rnor_6.04157,294,418 - 157,294,595NCBIRnor6.0
Rnor_6.0920,251,062 - 20,251,239NCBIRnor6.0
Rnor_5.04224,312,014 - 224,312,191UniSTSRnor5.0
Rnor_5.0919,127,038 - 19,127,215UniSTSRnor5.0
RGSC_v3.44160,899,384 - 160,899,561UniSTSRGSC3.4
Celera4146,319,371 - 146,319,548UniSTS
RH 3.4 Map41010.0UniSTS
Cytogenetic Map4q42UniSTS
RH137825  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24157,587,179 - 157,587,382 (-)MAPPERmRatBN7.2
mRatBN7.24157,587,179 - 157,587,382 (+)MAPPERmRatBN7.2
Rnor_6.04157,300,281 - 157,300,483NCBIRnor6.0
Rnor_6.0920,245,174 - 20,245,376NCBIRnor6.0
Rnor_5.04224,317,877 - 224,318,079UniSTSRnor5.0
Rnor_5.0919,121,150 - 19,121,352UniSTSRnor5.0
RGSC_v3.44160,905,247 - 160,905,449UniSTSRGSC3.4
Celera4146,325,215 - 146,325,417UniSTS
RH 3.4 Map41002.4UniSTS
Cytogenetic Map4q42UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)483428419177635233Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)485379421167139601Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)493308457167139447Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4109866907167139601Rat
1331759Hrtrt13Heart rate QTL 133.54628heart pumping trait (VT:2000009)heart rate (CMO:0000002)4110275411168266883Rat
12798519Anxrr54Anxiety related response QTL 542.540.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4114627026159627026Rat
724535Cm18Cardiac mass QTL 182.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)4118856416163856416Rat
634347Hcar8Hepatocarcinoma resistance QTL 85.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)4123143783168143783Rat
631683Bp116Blood pressure QTL 1160.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4124303370169303370Rat
6478778Anxrr51Anxiety related response QTL 510.25384locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4124778595169778595Rat
7411558Bw133Body weight QTL 13313.840.001body mass (VT:0001259)body weight gain (CMO:0000420)4125590636170590636Rat
61451Ciaa4CIA Autoantibody QTL 43.1blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)4126395976167139601Rat
737978Pia23Pristane induced arthritis QTL 235.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4131730738167139601Rat
631511Pia7Pristane induced arthritis QTL 74.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4131730738167139601Rat
1549827Scl46Serum cholesterol level QTL 463.5blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)4132396220177396220Rat
724558Plsm2Polydactyly-luxate syndrome (PLS) morphotypes QTL 20.0003hindlimb integrity trait (VT:0010563)hind foot phalanges count (CMO:0001949)4132422778177422778Rat
61422Cia13Collagen induced arthritis QTL 134.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4132642577167139601Rat
2303623Vencon2Ventilatory control QTL 23.8respiration trait (VT:0001943)minute ventilation (CMO:0000132)4135204660180204660Rat
1578674Bmd12Bone mineral density QTL 123.8femur mineral mass (VT:0010011)cortical volumetric bone mineral density (CMO:0001730)4135699135180699135Rat
2293659Bmd35Bone mineral density QTL 354.50.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)4137755016181392681Rat
61362Oia2Oil induced arthritis QTL 20.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4138503169173369699Rat
1298524Oia8Oil induced arthritis QTL 8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4138503169173369699Rat
1331738Bp209Blood pressure QTL 2092.979arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)4138503169179293946Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4144639524182687754Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4144639524182687754Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4145568712182687754Rat
634342Cia24Collagen induced arthritis QTL 244.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4146565735175236377Rat
12798525Anxrr57Anxiety related response QTL 573.210.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4147278504167139601Rat
1582237Kidm34Kidney mass QTL 3440.0001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)4148090542168069246Rat
1581574Eae20Experimental allergic encephalomyelitis QTL 207.8nervous system integrity trait (VT:0010566)percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)4153031106158841762Rat
10053718Scort25Serum corticosterone level QTL 252.150.0097blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)4155561574182687754Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:319
Count of miRNA genes:197
Interacting mature miRNAs:231
Transcripts:ENSRNOT00000051613, ENSRNOT00000071593
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

hemolymphoid system nervous system reproductive system respiratory system
High
Medium
Low 7 1
Below cutoff 1 9 4 4

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001013165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001394347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003750656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006237355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006237356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006237360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006237361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006244627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006244632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006244633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005503236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB038993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC129138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC079028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CV118996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X07726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000051613   ⟹   ENSRNOP00000051124
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4157,581,291 - 157,591,480 (-)Ensembl
Rnor_6.0 Ensembl4157,294,287 - 157,304,653 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000071593   ⟹   ENSRNOP00000066972
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4157,581,291 - 157,591,860 (-)Ensembl
Rnor_6.0 Ensembl920,241,062 - 20,251,319 (+)Ensembl
RefSeq Acc Id: NM_001013165   ⟹   NP_001013183
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24157,581,290 - 157,591,480 (-)NCBI
Rnor_6.04157,294,391 - 157,304,581 (-)NCBI
Rnor_5.04224,311,985 - 224,322,180 (-)NCBI
RGSC_v3.44160,899,357 - 160,909,547 (-)RGD
Celera4146,319,344 - 146,329,515 (-)RGD
Sequence:
RefSeq Acc Id: XM_003750656   ⟹   XP_003750704
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24157,581,285 - 157,592,177 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006244627   ⟹   XP_006244689
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24157,581,290 - 157,591,363 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006244632   ⟹   XP_006244694
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24157,581,285 - 157,592,183 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006244633   ⟹   XP_006244695
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24157,581,285 - 157,591,367 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039107673   ⟹   XP_038963601
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24157,581,285 - 157,592,186 (-)NCBI
RefSeq Acc Id: XR_005503236
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24157,582,225 - 157,592,188 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001013183   ⟸   NM_001013165
- Sequence:
RefSeq Acc Id: ENSRNOP00000051124   ⟸   ENSRNOT00000051613
RefSeq Acc Id: XP_038963601   ⟸   XM_039107673
- Peptide Label: isoform X2
RefSeq Acc Id: XP_006244694   ⟸   XM_006244632
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_003750704   ⟸   XM_003750656
- Peptide Label: isoform X1
- UniProtKB: G3V9K7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006244695   ⟸   XM_006244633
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006244689   ⟸   XM_006244627
- Peptide Label: isoform X1
- UniProtKB: G3V9K7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000066972   ⟸   ENSRNOT00000071593

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V9K7-F1-model_v2 AlphaFold G3V9K7 1-345 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693388
Promoter ID:EPDNEW_R3913
Type:single initiation site
Name:Lrrc23_1
Description:leucine rich repeat containing 23
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04157,304,593 - 157,304,653EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1304779 AgrOrtholog
BioCyc Gene G2FUF-43068 BioCyc
Ensembl Genes ENSRNOG00000026309 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00000047890 Ensembl
Ensembl Protein ENSRNOP00000051124.2 UniProtKB/TrEMBL
  ENSRNOP00000066972 ENTREZGENE
  ENSRNOP00000066972.2 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000051613.4 UniProtKB/TrEMBL
  ENSRNOT00000071593 ENTREZGENE
  ENSRNOT00000071593.3 UniProtKB/TrEMBL
Gene3D-CATH 3.80.10.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7114040 IMAGE-MGC_LOAD
InterPro L_dom-like UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/TrEMBL
KEGG Report rno:312707 UniProtKB/TrEMBL
MGC_CLONE MGC:93955 IMAGE-MGC_LOAD
NCBI Gene 312707 ENTREZGENE
Pfam LRR_6 UniProtKB/TrEMBL
PhenoGen Lrrc23 PhenoGen
PROSITE LRR UniProtKB/TrEMBL
SMART LRR_TYP UniProtKB/TrEMBL
UniProt G3V9K7 ENTREZGENE, UniProtKB/TrEMBL
  M0RBN0_RAT UniProtKB/TrEMBL
  Q6AYI9_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Lrrc23  leucine rich repeat containing 23  LOC100911585  leucine-rich repeat-containing protein 23-like  Data Merged 737654 PROVISIONAL
2012-07-05 LOC100911585  leucine-rich repeat-containing protein 23-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-03-30 Lrrc23  leucine rich repeat containing 23  Lrpb7  leucine rich protein, B7 gene  Symbol and Name updated 1299863 APPROVED
2005-12-06 Lrpb7  leucine rich protein, B7 gene  Lrpb7_predicted  leucine rich protein, B7 gene (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Lrpb7_predicted  leucine rich protein, B7 gene (predicted)      Symbol and Name status set to approved 70820 APPROVED