Wnt5b (Wnt family member 5B) - Rat Genome Database

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Gene: Wnt5b (Wnt family member 5B) Rattus norvegicus
Analyze
Symbol: Wnt5b
Name: Wnt family member 5B
RGD ID: 628850
Description: Predicted to enable cytokine activity and frizzled binding activity. Involved in wound healing. Predicted to be located in cell surface and extracellular matrix. Predicted to be active in extracellular space. Orthologous to human WNT5B (Wnt family member 5B); PARTICIPATES IN Wnt signaling pathway; Wnt signaling, canonical pathway; basal cell carcinoma pathway; INTERACTS WITH 1,3-dinitrobenzene; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: wingless-related MMTV integration site 5B; wingless-type MMTV integration site family, member 5B
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24152,609,566 - 152,733,790 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4152,609,569 - 152,733,407 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4158,871,858 - 158,887,919 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.04154,655,571 - 154,671,633 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.04153,278,919 - 153,294,983 (-)NCBIRnor_WKY
Rnor_6.04151,500,962 - 151,516,894 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4151,500,957 - 151,516,894 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04217,413,755 - 217,429,687 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44155,747,648 - 155,763,554 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14155,993,769 - 156,005,122 (-)NCBI
Celera4141,470,185 - 141,485,879 (-)NCBICelera
Cytogenetic Map4q42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Expression of Wnt and MMP in epithelial cells during corneal wound healing. Lyu J and Joo CK, Cornea. 2006 Dec;25(10 Suppl 1):S24-8.
3. Overexpression of the Wnt5b gene in leiomyoma cells: implications for a role of the Wnt signaling pathway in the uterine benign tumor. Mangioni S, etal., J Clin Endocrinol Metab. 2005 Sep;90(9):5349-55. Epub 2005 Jun 21.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. GOA pipeline RGD automated data pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Comprehensive gene review and curation RGD comprehensive gene curation
10. The Wnt Homepage Roel Nusse - Howard Hughes Medical Institute and the Department of Developmental Biology at Stanford University, California, USA
11. Transformation by Wnt family proteins correlates with regulation of beta-catenin. Shimizu H, etal., Cell Growth Differ. 1997 Dec;8(12):1349-58.
12. The evolutionarily conserved porcupine gene family is involved in the processing of the Wnt family. Tanaka K, etal., Eur J Biochem 2000 Jul;267(13):4300-11.
13. Alternative wnt signaling is initiated by distinct receptors. van Amerongen R, etal., Sci Signal. 2008 Sep 2;1(35):re9.
14. Differential transformation of mammary epithelial cells by Wnt genes. Wong GT, etal., Mol Cell Biol. 1994 Sep;14(9):6278-86.
15. Wnt5a and Wnt5b exhibit distinct activities in coordinating chondrocyte proliferation and differentiation. Yang Y, etal., Development 2003 Mar;130(5):1003-15.
Additional References at PubMed
PMID:8167409   PMID:12399112   PMID:12477932   PMID:15135146   PMID:15731909   PMID:15796911   PMID:19056867   PMID:19486338   PMID:20093360  


Genomics

Comparative Map Data
Wnt5b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24152,609,566 - 152,733,790 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4152,609,569 - 152,733,407 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4158,871,858 - 158,887,919 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.04154,655,571 - 154,671,633 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.04153,278,919 - 153,294,983 (-)NCBIRnor_WKY
Rnor_6.04151,500,962 - 151,516,894 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4151,500,957 - 151,516,894 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04217,413,755 - 217,429,687 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44155,747,648 - 155,763,554 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14155,993,769 - 156,005,122 (-)NCBI
Celera4141,470,185 - 141,485,879 (-)NCBICelera
Cytogenetic Map4q42NCBI
WNT5B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38121,617,056 - 1,647,212 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl121,529,891 - 1,647,212 (+)EnsemblGRCh38hg38GRCh38
GRCh37121,726,222 - 1,756,378 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36121,596,483 - 1,626,639 (+)NCBINCBI36Build 36hg18NCBI36
Build 34121,608,672 - 1,626,638NCBI
Celera123,334,306 - 3,364,399 (+)NCBICelera
Cytogenetic Map12p13.33NCBI
HuRef121,580,178 - 1,611,098 (+)NCBIHuRef
CHM1_1121,725,640 - 1,755,783 (+)NCBICHM1_1
T2T-CHM13v2.0121,612,578 - 1,643,573 (+)NCBIT2T-CHM13v2.0
Wnt5b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396119,409,492 - 119,521,880 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6119,409,492 - 119,521,308 (-)EnsemblGRCm39 Ensembl
GRCm386119,432,531 - 119,544,824 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6119,432,531 - 119,544,347 (-)EnsemblGRCm38mm10GRCm38
MGSCv376119,382,549 - 119,494,365 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366119,398,152 - 119,432,830 (-)NCBIMGSCv36mm8
Celera6121,265,742 - 121,378,088 (-)NCBICelera
Cytogenetic Map6F1NCBI
cM Map656.86NCBI
Wnt5b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554544,178,609 - 4,192,710 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554544,158,648 - 4,192,709 (+)NCBIChiLan1.0ChiLan1.0
WNT5B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1121,690,382 - 1,708,351 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl121,691,097 - 1,708,351 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0121,633,987 - 1,757,431 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
WNT5B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12743,662,482 - 43,679,713 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2743,620,284 - 43,677,078 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha273,005,866 - 3,114,488 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02743,937,616 - 44,046,407 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2743,990,960 - 44,044,187 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12743,868,749 - 43,977,500 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02743,841,172 - 43,950,683 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0272,363,801 - 2,472,605 (-)NCBIUU_Cfam_GSD_1.0
Wnt5b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945107,329,243 - 107,442,601 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366061,838,043 - 1,856,095 (+)EnsemblSpeTri2.0
SpeTri2.0NW_0049366061,741,500 - 1,854,857 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WNT5B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl568,627,185 - 68,732,265 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1568,627,158 - 68,731,938 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2571,086,581 - 71,088,105 (-)NCBISscrofa10.2Sscrofa10.2susScr3
WNT5B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1111,571,569 - 1,689,750 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl111,674,245 - 1,690,299 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660636,638,682 - 6,758,591 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wnt5b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473511,223,227 - 11,236,609 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473511,222,339 - 11,326,480 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Wnt5b
717 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:314
Count of miRNA genes:193
Interacting mature miRNAs:210
Transcripts:ENSRNOT00000011044
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)444463720155883716Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)459948935154902892Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)464528739157573521Rat
70177Xhs1X-ray hypersensitivity QTL 125.1intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)482798864152731274Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)483428419177635233Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)485379421167139601Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)493308457167139447Rat
7207480Bss105Bone structure and strength QTL 1058.1femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)4109827074154827074Rat
1549832Bss3Bone structure and strength QTL 311femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)4109827074154827074Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4109866907167139601Rat
1331759Hrtrt13Heart rate QTL 133.54628heart pumping trait (VT:2000009)heart rate (CMO:0000002)4110275411168266883Rat
6478760Anxrr45Anxiety related response QTL 450.06717locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
6478763Anxrr46Anxiety related response QTL 460.07428locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
12798519Anxrr54Anxiety related response QTL 542.540.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4114627026159627026Rat
724535Cm18Cardiac mass QTL 182.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)4118856416163856416Rat
1331802Srn5Serum renin concentration QTL 53.045renin activity (VT:0005581)plasma renin activity level (CMO:0000116)4119428175157578333Rat
634347Hcar8Hepatocarcinoma resistance QTL 85.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)4123143783168143783Rat
631683Bp116Blood pressure QTL 1160.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4124303370169303370Rat
6478778Anxrr51Anxiety related response QTL 510.25384locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4124778595169778595Rat
7411558Bw133Body weight QTL 13313.840.001body mass (VT:0001259)body weight gain (CMO:0000420)4125590636170590636Rat
61451Ciaa4CIA Autoantibody QTL 43.1blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)4126395976167139601Rat
737978Pia23Pristane induced arthritis QTL 235.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4131730738167139601Rat
631511Pia7Pristane induced arthritis QTL 74.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4131730738167139601Rat
1549827Scl46Serum cholesterol level QTL 463.5blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)4132396220177396220Rat
724558Plsm2Polydactyly-luxate syndrome (PLS) morphotypes QTL 20.0003hindlimb integrity trait (VT:0010563)hind foot phalanges count (CMO:0001949)4132422778177422778Rat
61422Cia13Collagen induced arthritis QTL 134.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4132642577167139601Rat
2303623Vencon2Ventilatory control QTL 23.8respiration trait (VT:0001943)minute ventilation (CMO:0000132)4135204660180204660Rat
1578674Bmd12Bone mineral density QTL 123.8femur mineral mass (VT:0010011)cortical volumetric bone mineral density (CMO:0001730)4135699135180699135Rat
2293659Bmd35Bone mineral density QTL 354.50.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)4137755016181392681Rat
61362Oia2Oil induced arthritis QTL 20.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4138503169173369699Rat
1298524Oia8Oil induced arthritis QTL 8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4138503169173369699Rat
1331738Bp209Blood pressure QTL 2092.979arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)4138503169179293946Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4144639524182687754Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4144639524182687754Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4145568712182687754Rat
634342Cia24Collagen induced arthritis QTL 244.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4146565735175236377Rat
12798525Anxrr57Anxiety related response QTL 573.210.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4147278504167139601Rat
1582237Kidm34Kidney mass QTL 3440.0001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)4148090542168069246Rat
61446Coreg2Compensatory renal growth QTL 23.5kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)4148423102157580971Rat

Markers in Region
Wnt5b  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24152,610,063 - 152,610,483 (+)MAPPERmRatBN7.2
Rnor_6.04151,501,460 - 151,501,879NCBIRnor6.0
Rnor_5.04217,414,253 - 217,414,672UniSTSRnor5.0
RGSC_v3.44155,748,146 - 155,748,565UniSTSRGSC3.4
Celera4141,470,683 - 141,471,102UniSTS
Cytogenetic Map4q42UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 8 6 22 2
Low 3 37 20 8 15 8 1 65 29 19 9
Below cutoff 6 34 30 4 30 8 10 1 8

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000011044   ⟹   ENSRNOP00000011044
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4152,609,569 - 152,733,407 (-)Ensembl
Rnor_6.0 Ensembl4151,500,962 - 151,516,894 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000089970   ⟹   ENSRNOP00000070168
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl4151,500,957 - 151,516,223 (-)Ensembl
RefSeq Acc Id: NM_001100489   ⟹   NP_001093959
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24152,609,566 - 152,625,315 (-)NCBI
Rnor_6.04151,500,962 - 151,516,894 (-)NCBI
Rnor_5.04217,413,755 - 217,429,687 (-)NCBI
RGSC_v3.44155,747,648 - 155,763,554 (-)RGD
Celera4141,470,185 - 141,485,879 (-)RGD
Sequence:
RefSeq Acc Id: XM_039107157   ⟹   XP_038963085
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24152,609,566 - 152,733,407 (-)NCBI
RefSeq Acc Id: XM_039107158   ⟹   XP_038963086
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24152,609,566 - 152,733,790 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001093959   ⟸   NM_001100489
- Peptide Label: precursor
- UniProtKB: B1WBR9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000070168   ⟸   ENSRNOT00000089970
RefSeq Acc Id: ENSRNOP00000011044   ⟸   ENSRNOT00000011044
RefSeq Acc Id: XP_038963086   ⟸   XM_039107158
- Peptide Label: isoform X1
- UniProtKB: B1WBR9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963085   ⟸   XM_039107157
- Peptide Label: isoform X1
- UniProtKB: B1WBR9 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B1WBR9-F1-model_v2 AlphaFold B1WBR9 1-372 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:628850 AgrOrtholog
BioCyc Gene G2FUF-43218 BioCyc
Ensembl Genes ENSRNOG00000008168 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000011044 ENTREZGENE
  ENSRNOP00000011044.4 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000011044 ENTREZGENE
  ENSRNOT00000011044.5 UniProtKB/TrEMBL
Gene3D-CATH 3.30.2460.20 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7096336 IMAGE-MGC_LOAD
InterPro Wnt5b UniProtKB/TrEMBL
  Wnt_C UniProtKB/TrEMBL
  Wnt_CS UniProtKB/TrEMBL
  Wnt_SF UniProtKB/TrEMBL
KEGG Report rno:282582 UniProtKB/TrEMBL
MGC_CLONE MGC:187394 IMAGE-MGC_LOAD
NCBI Gene 282582 ENTREZGENE
PANTHER PTHR12027:SF87 UniProtKB/TrEMBL
  Wnt UniProtKB/TrEMBL
Pfam wnt UniProtKB/TrEMBL
PhenoGen Wnt5b PhenoGen
PRINTS WNTPROTEIN UniProtKB/TrEMBL
PROSITE WNT1 UniProtKB/TrEMBL
SMART WNT1 UniProtKB/TrEMBL
UniProt B1WBR9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-03-29 Wnt5b  Wnt family member 5B  Wnt5b  wingless-type MMTV integration site family, member 5B  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-11-14 Wnt5b  wingless-type MMTV integration site family, member 5B  Wnt5b  wingless-related MMTV integration site 5B  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Wnt5b  wingless-related MMTV integration site 5B      Symbol and Name status set to approved 1299863 APPROVED
2003-02-27 Wnt5b  wingless-related MMTV integration site 5B      Symbol and Name status set to provisional 70820 PROVISIONAL