Anxrr43 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Anxrr43 (Anxiety related response QTL 43) Rattus norvegicus

Symbol: Anxrr43
Name: Anxiety related response QTL 43
RGD ID: 6478754
Previously known as: total locomotion OF
Trait: locomotor behavior trait   (VT:0001392)    
Measurement Type: distance moved per unit of time into, out of or within a discrete space in an experimental apparatus   (CMO:0001493)    
LOD Score: LRS: 10.4
P Value: 0.14035
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr84146,370,897 - 184,426,481RGD_MAPPER_PIPELINE
mRatBN7.24144,639,524 - 182,687,754RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.04145,547,014 - 184,226,339RGD_MAPPER_PIPELINERnor6.0
Rnor_5.04208,065,149 - 248,343,840RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.44148,704,454 - 187,126,005RGD_MAPPER_PIPELINERGSC3.4
Cross Type: intercross
Strains Crossed: SHR/NCrlAnra LEW/HsdUnibAnra 
JBrowse: View Region in Genome Browser (JBrowse)
Model




  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Anxrr43Ratanxiety disorder  IAGP 6218999 RGD 

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Anxrr43Ratincreased anxiety-related response  IDA 6218999 RGD 

Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Anxrr43Ratdistance moved per unit of time into, out of or within a discrete space in an experimental apparatus  IDA 6218999 RGD 

Experimental Condition
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Anxrr43Ratcontrol condition  IDA 6218999 RGD 

Measurement Method
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Anxrr43Ratnovel cage apparatus test utilizing automatic movement detection system  IDA 6218999 RGD 

Rat Strain
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Anxrr43RatLEW/HsdUnibAnra  IEA 6218999 RGD 
Anxrr43RatSHR/NCrlAnra  IEA 6218999 RGD 

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Anxrr43Ratlocomotor behavior trait  IDA 6218999 RGD 


#
Reference Title
Reference Citation
1. The influence of sex and estrous cycle on QTL for emotionality and ethanol consumption. Izidio GS, etal., Mamm Genome. 2011 Jun;22(5-6):329-40. Epub 2011 Apr 24.


1 to 20 of 687 rows
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
41317445LOC120102593U6 spliceosomal RNA4144668340144668444Rat
41066235Eef1a1-ps16eukaryotic translation elongation factor 1 alpha 1, pseudogene 164145130360145132187Rat
1308963Lmcd1LIM and cysteine-rich domains 14145393153145452049Rat
1562010Ssuh2ssu-2 homolog4145502942145521881Rat
2281Cav3caveolin 34145582168145598142Rat
3239Oxtroxytocin receptor4145598549145614674Rat
1306993Rad18RAD18 E3 ubiquitin protein ligase4145735654145821102Rat
7609120LOC102548080uncharacterized LOC1025480804145820794145887127Rat
1563152Srgap3SLIT-ROBO Rho GTPase activating protein 34145839369146070556Rat
41196182LOC120102769small nucleolar RNA U34146088309146088519Rat
7623898LOC102548337uncharacterized LOC1025483374146168757146185408Rat
1560852Thumpd3THUMP domain containing 34146185422146209802Rat
41216201LOC120102586U6 spliceosomal RNA4146200474146200580Rat
6491660Thumpd3-as1THUMPD3 antisense RNA 14146210520146217026Rat
1310433Setd5SET domain containing 54146217172146294896Rat
41393297Trnap-agg26transfer RNA proline (anticodon AGG) 264146300941146301014Rat
727967Lhfpl4LHFPL tetraspan subfamily member 44146317110146340073Rat
1304842Mtmr14myotubularin related protein 144146386949146429990Rat
1309212Cpne9copine family member 94146429961146454335Rat
1584828Brpf1bromodomain and PHD finger containing, 14146456325146472781Rat

1 to 20 of 687 rows
1 to 20 of 900 rows
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Expected Size
Chr
Start
Stop
Species
Match
10048D4Mit202394154902669154902892Ratregion
10049D4Wox161434154896195154896338Ratregion
10266D4Arb41604151805502151805662Ratregion
10267D4Mgh301334151805495151805620Ratregion
10522D4Wox141204157578205157578332Ratregion
10522D4Wox141204157578205157578332Ratregion
10523D4Wox151704157578615157578785Ratregion
10523D4Wox151704157578615157578785Ratregion
10524D4Mit31214157573398157573521Ratregion
10524D4Mit31214157573398157573521Ratregion
10526D4Got1341474157573397157573546Ratregion
10526D4Got1341474157573397157573546Ratregion
10752D4Wox121434175236234175236377Ratregion
10753D4Arb13004175236183175236483Ratregion
11146D1Mgh301184157578663157578781Ratregion
11146D1Mgh301184157578663157578781Ratregion
11187D4Wox11934180200975180201064Ratregion
33832D4Mit271994168266684168266883Ratregion
33874D4Mit221484171728017171728165Ratregion
33995D4Mit191294146565735146565864Ratregion
1 to 20 of 900 rows

Peak: (D4Mgh11)
Rat AssemblyChrPosition (strand)Source
GRCr84168,870,820 - 168,870,974 (+)Marker Load Pipeline
mRatBN7.24167,139,447 - 167,139,601 (+)MAPPER
Rnor_6.04168,046,938 - 168,047,091NCBI
Rnor_5.04230,565,073 - 230,565,226UniSTS
RGSC_v3.44171,204,377 - 171,204,531RGD
RGSC_v3.44171,204,378 - 171,204,531UniSTS
RGSC_v3.14171,449,313 - 171,449,467RGD
Celera4155,742,437 - 155,742,588UniSTS
RH 3.4 Map41015.5UniSTS
RH 3.4 Map41015.5RGD
RH 2.0 Map41078.1RGD
SHRSP x BN Map487.2499RGD
FHH x ACI Map4107.8999RGD
Cytogenetic Map4 RGD


1 to 10 of 68 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)485253748148090731Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
1582237Kidm34Kidney mass QTL 3440.0001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)4148090542168069246Rat
61446Coreg2Compensatory renal growth QTL 23.5kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)4148423102157580971Rat
1300116Hrtrt5Heart rate QTL 53.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)4116179486151161268Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4144639524182687754Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)426775591168368347Rat
631683Bp116Blood pressure QTL 1160.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4124303370169303370Rat
61451Ciaa4CIA Autoantibody QTL 43.1blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)4126395976167139601Rat
1331738Bp209Blood pressure QTL 2092.979arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)4138503169179293946Rat

1 to 10 of 68 rows


Note Type Note Reference
qtl_cross_type intercross 6218999
qtl_general measurement method: rat was placed in the center of the open field and total locomotion scored for 5 min that is number of central squares crossed with all 4 paws 6218999
qtl_general number of animals used: 96 female F2 rats 6218999
qtl_general inducing agent:subcutaneous injection of estradiol benzoate (10ug/0.1ml) and progesterone (5mg/kg) in a injection volume of 1mg/kg 6218999
qtl_general software used:Genotype=QTX; behavioral variables=two-way ANOVA 6218999
qtl_general spans 97 cM 6218999
qtl_statistics LRS: 10.4 6218999