Plekha5 (pleckstrin homology domain containing A5) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Plekha5 (pleckstrin homology domain containing A5) Rattus norvegicus
Analyze
Symbol: Plekha5
Name: pleckstrin homology domain containing A5
RGD ID: 621175
Description: Predicted to enable phosphatidylinositol phosphate binding activity. Predicted to act upstream of or within reproductive system development. Predicted to be located in nucleoplasm. Predicted to be active in cytosol; glutamatergic synapse; and postsynaptic density. Orthologous to human PLEKHA5 (pleckstrin homology domain containing A5); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Pepp2; phosphoinositol 3-phosphate-binding protein 2; pleckstrin homology domain containing, family A member 5; pleckstrin homology domain-containing family A member 5; TRS1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84175,065,011 - 175,234,672 (+)NCBIGRCr8
mRatBN7.24173,333,891 - 173,503,546 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4173,334,055 - 173,503,546 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4179,628,997 - 179,798,469 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04175,413,199 - 175,582,673 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04174,033,759 - 174,203,235 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04174,605,462 - 174,774,692 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4174,605,476 - 174,774,693 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04238,838,538 - 239,007,298 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44177,616,038 - 177,784,751 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14177,947,792 - 177,985,681 (+)NCBI
Celera4161,881,645 - 162,050,996 (+)NCBICelera
Cytogenetic Map4q44NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
caffeine  (ISO)
cefaloridine  (EXP)
cisplatin  (ISO)
clofibrate  (ISO)
cobalt dichloride  (ISO)
cocaine  (EXP)
coumarin  (ISO)
coumestrol  (ISO)
dexamethasone  (ISO)
dicrotophos  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
Enterolactone  (ISO)
fipronil  (EXP)
flutamide  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
glafenine  (EXP)
Heptachlor epoxide  (ISO)
hydrogen peroxide  (ISO)
indometacin  (ISO)
irinotecan  (ISO)
ivermectin  (ISO)
melphalan  (ISO)
mercury dichloride  (ISO)
methapyrilene  (ISO)
methotrexate  (ISO)
methoxychlor  (EXP)
methylparaben  (ISO)
N,N-diethyl-m-toluamide  (EXP)
N-nitrosodiethylamine  (EXP)
paracetamol  (EXP,ISO)
perfluorohexanesulfonic acid  (ISO)
permethrin  (EXP)
phenethyl caffeate  (EXP)
phenobarbital  (ISO)
piperonyl butoxide  (EXP)
pirinixic acid  (ISO)
potassium chromate  (ISO)
potassium dichromate  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
selenium atom  (ISO)
temozolomide  (ISO)
thimerosal  (ISO)
thioacetamide  (EXP)
triptonide  (ISO)
valdecoxib  (EXP)
valproic acid  (ISO)
vinclozolin  (EXP)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Cloning and characterization of temperature-related gene TRS1. Han XB, etal., Arch Androl 2002 Jul-Aug;48(4):273-80.
3. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Two novel human X-linked homeobox genes, hPEPP1 and hPEPP2, selectively expressed in the testis. Wayne CM, etal., Gene 2002 Nov 13;301(1-2):1-11.
Additional References at PubMed
PMID:12477932   PMID:19574395   PMID:19946888   PMID:22037487   PMID:28935861  


Genomics

Comparative Map Data
Plekha5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84175,065,011 - 175,234,672 (+)NCBIGRCr8
mRatBN7.24173,333,891 - 173,503,546 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4173,334,055 - 173,503,546 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4179,628,997 - 179,798,469 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04175,413,199 - 175,582,673 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04174,033,759 - 174,203,235 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04174,605,462 - 174,774,692 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4174,605,476 - 174,774,693 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04238,838,538 - 239,007,298 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44177,616,038 - 177,784,751 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14177,947,792 - 177,985,681 (+)NCBI
Celera4161,881,645 - 162,050,996 (+)NCBICelera
Cytogenetic Map4q44NCBI
PLEKHA5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381219,129,733 - 19,376,400 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1219,129,669 - 19,376,400 (+)EnsemblGRCh38hg38GRCh38
GRCh371219,282,667 - 19,529,334 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361219,173,995 - 19,420,601 (+)NCBINCBI36Build 36hg18NCBI36
Build 341219,173,994 - 19,420,598NCBI
Celera1224,428,283 - 24,674,976 (+)NCBICelera
Cytogenetic Map12p12.3NCBI
HuRef1219,052,180 - 19,298,319 (+)NCBIHuRef
CHM1_11219,248,078 - 19,494,739 (+)NCBICHM1_1
T2T-CHM13v2.01219,006,407 - 19,253,173 (+)NCBIT2T-CHM13v2.0
Plekha5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396140,369,358 - 140,542,836 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6140,369,780 - 140,542,836 (+)EnsemblGRCm39 Ensembl
GRCm386140,423,639 - 140,597,110 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6140,424,054 - 140,597,110 (+)EnsemblGRCm38mm10GRCm38
MGSCv376140,372,620 - 140,543,427 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366140,497,581 - 140,559,513 (+)NCBIMGSCv36mm8
Celera6143,491,272 - 143,660,985 (+)NCBICelera
Cytogenetic Map6G2NCBI
cM Map670.34NCBI
Plekha5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541315,239,057 - 15,471,331 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541315,239,070 - 15,470,137 (+)NCBIChiLan1.0ChiLan1.0
PLEKHA5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21024,576,631 - 24,822,176 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11224,573,396 - 24,818,938 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01219,132,418 - 19,377,981 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11219,518,129 - 19,762,056 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1219,518,125 - 19,762,056 (+)Ensemblpanpan1.1panPan2
PLEKHA5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12727,777,104 - 28,023,875 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2727,777,326 - 28,023,987 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2718,425,085 - 18,671,175 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02728,115,426 - 28,357,895 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2728,115,423 - 28,358,740 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12727,962,440 - 28,204,517 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02727,944,795 - 28,190,666 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02718,133,324 - 18,375,427 (+)NCBIUU_Cfam_GSD_1.0
Plekha5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494589,013,788 - 89,247,698 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365486,937,532 - 7,038,210 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365486,936,674 - 7,171,035 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLEKHA5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl553,760,824 - 54,016,886 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1553,760,816 - 54,016,979 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2557,056,542 - 57,298,945 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PLEKHA5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11118,985,103 - 19,234,328 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1118,985,199 - 19,234,309 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606915,944,787 - 16,207,293 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Plekha5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475219,057,767 - 19,298,772 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475219,055,158 - 19,298,933 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Plekha5
471 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:498
Count of miRNA genes:246
Interacting mature miRNAs:287
Transcripts:ENSRNOT00000011770, ENSRNOT00000042291
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61362Oia2Oil induced arthritis QTL 20.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4138503169173369699Rat
724558Plsm2Polydactyly-luxate syndrome (PLS) morphotypes QTL 20.0003hindlimb integrity trait (VT:0010563)hind foot phalanges count (CMO:0001949)4132422778177422778Rat
1298524Oia8Oil induced arthritis QTL 8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4138503169173369699Rat
634342Cia24Collagen induced arthritis QTL 244.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4146565735175236377Rat
1300109Rf13Renal function QTL 133.91renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)4157710145182687754Rat
1331738Bp209Blood pressure QTL 2092.979arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)4138503169179293946Rat
1549827Scl46Serum cholesterol level QTL 463.5blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)4132396220177396220Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)483428419177635233Rat
1578674Bmd12Bone mineral density QTL 123.8femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)4135699135180699135Rat
2293659Bmd35Bone mineral density QTL 354.50.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)4137755016181392681Rat
2303623Vencon2Ventilatory control QTL 23.8respiration trait (VT:0001943)minute ventilation (CMO:0000132)4135204660180204660Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4144639524182687754Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4144639524182687754Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
10053718Scort25Serum corticosterone level QTL 252.150.0097blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)4155561574182687754Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4145568712182687754Rat

Markers in Region
AI428202  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24173,503,097 - 173,503,253 (+)MAPPERmRatBN7.2
Rnor_6.04174,774,244 - 174,774,399NCBIRnor6.0
Rnor_5.04239,006,850 - 239,007,005UniSTSRnor5.0
RGSC_v3.44177,784,431 - 177,784,586UniSTSRGSC3.4
Celera4162,050,548 - 162,050,703UniSTS
Cytogenetic Map4q44UniSTS
RH133359  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24173,503,113 - 173,503,327 (+)MAPPERmRatBN7.2
Rnor_6.04174,774,260 - 174,774,473NCBIRnor6.0
Rnor_5.04239,006,866 - 239,007,079UniSTSRnor5.0
RGSC_v3.44177,784,447 - 177,784,660UniSTSRGSC3.4
Celera4162,050,564 - 162,050,777UniSTS
RH 3.4 Map41034.8UniSTS
Cytogenetic Map4q44UniSTS
RH144161  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24173,503,200 - 173,503,443 (+)MAPPERmRatBN7.2
Rnor_6.04174,774,347 - 174,774,589NCBIRnor6.0
Rnor_5.04239,006,953 - 239,007,195UniSTSRnor5.0
RGSC_v3.44177,784,534 - 177,784,776UniSTSRGSC3.4
Celera4162,050,651 - 162,050,893UniSTS
RH 3.4 Map41040.6UniSTS
Cytogenetic Map4q44UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 33 8 6 10 6 74 35 41 11
Low 10 49 35 9 35 8 11 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_139340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008763357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008763358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008763359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008763360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008763361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008763362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008763363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008763365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008763366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008763367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001837479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005503147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010065613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010065614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_592304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF468695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC092653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC158707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000011770   ⟹   ENSRNOP00000011770
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4173,428,680 - 173,503,546 (+)Ensembl
Rnor_6.0 Ensembl4174,692,331 - 174,774,693 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000042291   ⟹   ENSRNOP00000047573
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4173,334,055 - 173,503,546 (+)Ensembl
Rnor_6.0 Ensembl4174,605,476 - 174,774,692 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000095631   ⟹   ENSRNOP00000084216
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4173,334,055 - 173,503,310 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000103410   ⟹   ENSRNOP00000095265
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4173,421,347 - 173,459,217 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000103935   ⟹   ENSRNOP00000078444
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4173,334,055 - 173,503,546 (+)Ensembl
RefSeq Acc Id: NM_139340   ⟹   NP_647556
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84175,065,183 - 175,234,672 (+)NCBI
mRatBN7.24173,334,055 - 173,503,546 (+)NCBI
Rnor_6.04174,605,462 - 174,774,692 (+)NCBI
Rnor_5.04238,838,538 - 239,007,298 (+)NCBI
Celera4161,881,645 - 162,050,996 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008763357   ⟹   XP_008761579
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84175,065,019 - 175,234,009 (+)NCBI
mRatBN7.24173,333,891 - 173,503,546 (+)NCBI
Rnor_6.04174,605,468 - 174,774,692 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008763358   ⟹   XP_008761580
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84175,065,019 - 175,234,672 (+)NCBI
mRatBN7.24173,333,891 - 173,503,546 (+)NCBI
Rnor_6.04174,605,554 - 174,774,692 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008763359   ⟹   XP_008761581
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84175,065,021 - 175,234,009 (+)NCBI
mRatBN7.24173,333,892 - 173,503,546 (+)NCBI
Rnor_6.04174,605,468 - 174,774,692 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008763360   ⟹   XP_008761582
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84175,065,022 - 175,234,009 (+)NCBI
mRatBN7.24173,333,892 - 173,503,546 (+)NCBI
Rnor_6.04174,605,468 - 174,774,692 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008763361   ⟹   XP_008761583
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84175,144,661 - 175,234,009 (+)NCBI
mRatBN7.24173,416,882 - 173,503,546 (+)NCBI
Rnor_6.04174,690,011 - 174,774,692 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008763362   ⟹   XP_008761584
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84175,065,025 - 175,234,009 (+)NCBI
mRatBN7.24173,333,894 - 173,503,546 (+)NCBI
Rnor_6.04174,605,554 - 174,774,692 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008763363   ⟹   XP_008761585
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84175,170,731 - 175,234,009 (+)NCBI
mRatBN7.24173,439,617 - 173,503,546 (+)NCBI
Rnor_6.04174,710,929 - 174,774,692 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592449   ⟹   XP_017447938
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84175,065,020 - 175,234,009 (+)NCBI
mRatBN7.24173,333,891 - 173,503,546 (+)NCBI
Rnor_6.04174,605,468 - 174,774,692 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592451   ⟹   XP_017447940
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84175,133,571 - 175,234,009 (+)NCBI
mRatBN7.24173,402,440 - 173,503,546 (+)NCBI
Rnor_6.04174,673,760 - 174,774,692 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592452   ⟹   XP_017447941
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84175,065,020 - 175,234,009 (+)NCBI
mRatBN7.24173,333,891 - 173,503,546 (+)NCBI
Rnor_6.04174,605,468 - 174,774,692 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592453   ⟹   XP_017447942
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84175,065,020 - 175,234,009 (+)NCBI
mRatBN7.24173,333,891 - 173,503,546 (+)NCBI
Rnor_6.04174,605,468 - 174,774,692 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592455   ⟹   XP_017447944
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84175,065,021 - 175,234,009 (+)NCBI
mRatBN7.24173,333,891 - 173,503,546 (+)NCBI
Rnor_6.04174,605,468 - 174,774,692 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592456   ⟹   XP_017447945
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84175,065,020 - 175,234,009 (+)NCBI
mRatBN7.24173,333,891 - 173,503,546 (+)NCBI
Rnor_6.04174,605,468 - 174,774,692 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592457   ⟹   XP_017447946
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84175,065,020 - 175,234,009 (+)NCBI
mRatBN7.24173,333,891 - 173,503,546 (+)NCBI
Rnor_6.04174,605,468 - 174,774,692 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592459   ⟹   XP_017447948
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84175,065,024 - 175,234,009 (+)NCBI
mRatBN7.24173,333,893 - 173,503,546 (+)NCBI
Rnor_6.04174,605,554 - 174,774,692 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592461   ⟹   XP_017447950
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84175,065,024 - 175,218,898 (+)NCBI
mRatBN7.24173,333,893 - 173,487,790 (+)NCBI
Rnor_6.04174,605,468 - 174,758,888 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592462   ⟹   XP_017447951
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84175,065,027 - 175,202,863 (+)NCBI
mRatBN7.24173,333,896 - 173,476,264 (+)NCBI
Rnor_6.04174,605,468 - 174,742,974 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592465   ⟹   XP_017447954
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84175,065,021 - 175,234,009 (+)NCBI
mRatBN7.24173,333,892 - 173,503,546 (+)NCBI
Rnor_6.04174,605,468 - 174,774,692 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039107033   ⟹   XP_038962961
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84175,065,023 - 175,234,009 (+)NCBI
mRatBN7.24173,333,892 - 173,503,546 (+)NCBI
RefSeq Acc Id: XM_039107034   ⟹   XP_038962962
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84175,106,087 - 175,234,009 (+)NCBI
mRatBN7.24173,374,517 - 173,503,546 (+)NCBI
RefSeq Acc Id: XM_039107035   ⟹   XP_038962963
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84175,105,481 - 175,234,009 (+)NCBI
mRatBN7.24173,374,427 - 173,503,546 (+)NCBI
RefSeq Acc Id: XM_039107036   ⟹   XP_038962964
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84175,065,021 - 175,234,009 (+)NCBI
mRatBN7.24173,333,892 - 173,503,546 (+)NCBI
RefSeq Acc Id: XM_039107037   ⟹   XP_038962965
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84175,065,023 - 175,234,009 (+)NCBI
mRatBN7.24173,333,893 - 173,503,546 (+)NCBI
RefSeq Acc Id: XM_039107038   ⟹   XP_038962966
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84175,065,023 - 175,234,009 (+)NCBI
mRatBN7.24173,333,893 - 173,503,546 (+)NCBI
RefSeq Acc Id: XM_039107039   ⟹   XP_038962967
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84175,065,024 - 175,234,009 (+)NCBI
mRatBN7.24173,333,893 - 173,503,546 (+)NCBI
RefSeq Acc Id: XM_039107040   ⟹   XP_038962968
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84175,067,811 - 175,234,009 (+)NCBI
mRatBN7.24173,340,365 - 173,503,546 (+)NCBI
RefSeq Acc Id: XM_039107041   ⟹   XP_038962969
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84175,065,025 - 175,234,009 (+)NCBI
mRatBN7.24173,333,894 - 173,503,546 (+)NCBI
RefSeq Acc Id: XM_039107042   ⟹   XP_038962970
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84175,065,025 - 175,234,009 (+)NCBI
mRatBN7.24173,333,893 - 173,503,546 (+)NCBI
RefSeq Acc Id: XM_063285534   ⟹   XP_063141604
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84175,065,020 - 175,234,672 (+)NCBI
RefSeq Acc Id: XM_063285535   ⟹   XP_063141605
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84175,065,020 - 175,234,009 (+)NCBI
RefSeq Acc Id: XM_063285536   ⟹   XP_063141606
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84175,065,022 - 175,234,009 (+)NCBI
RefSeq Acc Id: XM_063285537   ⟹   XP_063141607
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84175,065,021 - 175,234,009 (+)NCBI
RefSeq Acc Id: XM_063285538   ⟹   XP_063141608
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84175,105,479 - 175,234,009 (+)NCBI
RefSeq Acc Id: XM_063285539   ⟹   XP_063141609
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84175,065,023 - 175,234,009 (+)NCBI
RefSeq Acc Id: XM_063285540   ⟹   XP_063141610
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84175,065,022 - 175,234,672 (+)NCBI
RefSeq Acc Id: XM_063285541   ⟹   XP_063141611
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84175,065,021 - 175,234,009 (+)NCBI
RefSeq Acc Id: XM_063285542   ⟹   XP_063141612
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84175,065,021 - 175,234,009 (+)NCBI
RefSeq Acc Id: XM_063285543   ⟹   XP_063141613
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84175,067,813 - 175,234,009 (+)NCBI
RefSeq Acc Id: XM_063285544   ⟹   XP_063141614
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84175,065,023 - 175,234,009 (+)NCBI
RefSeq Acc Id: XM_063285545   ⟹   XP_063141615
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84175,065,025 - 175,234,009 (+)NCBI
RefSeq Acc Id: XM_063285546   ⟹   XP_063141616
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84175,065,025 - 175,234,672 (+)NCBI
RefSeq Acc Id: XM_063285547   ⟹   XP_063141617
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84175,065,025 - 175,234,009 (+)NCBI
RefSeq Acc Id: XM_063285548   ⟹   XP_063141618
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84175,065,025 - 175,234,672 (+)NCBI
RefSeq Acc Id: XM_063285549   ⟹   XP_063141619
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84175,065,026 - 175,234,672 (+)NCBI
RefSeq Acc Id: XR_001837479
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84175,065,024 - 175,220,389 (+)NCBI
mRatBN7.24173,333,893 - 173,489,263 (+)NCBI
Rnor_6.04174,605,468 - 174,760,380 (+)NCBI
Sequence:
RefSeq Acc Id: XR_005503147
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84175,065,024 - 175,221,884 (+)NCBI
mRatBN7.24173,333,893 - 173,490,758 (+)NCBI
RefSeq Acc Id: XR_010065613
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84175,065,024 - 175,220,389 (+)NCBI
RefSeq Acc Id: XR_010065614
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84175,065,011 - 175,174,037 (+)NCBI
RefSeq Acc Id: XR_592304
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84175,065,024 - 175,220,389 (+)NCBI
mRatBN7.24173,333,893 - 173,489,263 (+)NCBI
Rnor_6.04174,605,468 - 174,760,390 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_647556 (Get FASTA)   NCBI Sequence Viewer  
  XP_008761579 (Get FASTA)   NCBI Sequence Viewer  
  XP_008761580 (Get FASTA)   NCBI Sequence Viewer  
  XP_008761581 (Get FASTA)   NCBI Sequence Viewer  
  XP_008761582 (Get FASTA)   NCBI Sequence Viewer  
  XP_008761583 (Get FASTA)   NCBI Sequence Viewer  
  XP_008761584 (Get FASTA)   NCBI Sequence Viewer  
  XP_008761585 (Get FASTA)   NCBI Sequence Viewer  
  XP_017447938 (Get FASTA)   NCBI Sequence Viewer  
  XP_017447940 (Get FASTA)   NCBI Sequence Viewer  
  XP_017447941 (Get FASTA)   NCBI Sequence Viewer  
  XP_017447942 (Get FASTA)   NCBI Sequence Viewer  
  XP_017447944 (Get FASTA)   NCBI Sequence Viewer  
  XP_017447945 (Get FASTA)   NCBI Sequence Viewer  
  XP_017447946 (Get FASTA)   NCBI Sequence Viewer  
  XP_017447948 (Get FASTA)   NCBI Sequence Viewer  
  XP_017447950 (Get FASTA)   NCBI Sequence Viewer  
  XP_017447951 (Get FASTA)   NCBI Sequence Viewer  
  XP_017447954 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962961 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962962 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962963 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962964 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962965 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962966 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962967 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962968 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962969 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962970 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141604 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141605 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141606 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141607 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141608 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141609 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141610 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141611 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141612 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141613 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141614 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141615 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141616 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141617 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141618 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141619 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI58708 (Get FASTA)   NCBI Sequence Viewer  
  AAM44231 (Get FASTA)   NCBI Sequence Viewer  
  EDM01555 (Get FASTA)   NCBI Sequence Viewer  
  EDM01556 (Get FASTA)   NCBI Sequence Viewer  
  EDM01557 (Get FASTA)   NCBI Sequence Viewer  
  EDM01558 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000011770
  ENSRNOP00000011770.6
  ENSRNOP00000047573
  ENSRNOP00000047573.4
  ENSRNOP00000078444
  ENSRNOP00000078444.1
  ENSRNOP00000084216
  ENSRNOP00000084216.1
  ENSRNOP00000095265.1
RefSeq Acc Id: NP_647556   ⟸   NM_139340
- UniProtKB: E9PTG5 (UniProtKB/TrEMBL),   A0A8I5ZYP4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008761580   ⟸   XM_008763358
- Peptide Label: isoform X4
- UniProtKB: A0A8I5ZYP4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008761579   ⟸   XM_008763357
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZYP4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008761581   ⟸   XM_008763359
- Peptide Label: isoform X20
- UniProtKB: A0A8I5ZYP4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008761582   ⟸   XM_008763360
- Peptide Label: isoform X25
- UniProtKB: A0A8I5ZYP4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008761584   ⟸   XM_008763362
- Peptide Label: isoform X35
- UniProtKB: A0A8I5ZKV5 (UniProtKB/TrEMBL),   A0A8I5ZYP4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008761583   ⟸   XM_008763361
- Peptide Label: isoform X28
- UniProtKB: D3ZSV9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008761585   ⟸   XM_008763363
- Peptide Label: isoform X40
- UniProtKB: D3ZSV9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447944   ⟸   XM_017592455
- Peptide Label: isoform X10
- UniProtKB: D3ZSV9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447945   ⟸   XM_017592456
- Peptide Label: isoform X16
- UniProtKB: D3ZSV9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447946   ⟸   XM_017592457
- Peptide Label: isoform X19
- UniProtKB: D3ZSV9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447941   ⟸   XM_017592452
- Peptide Label: isoform X7
- UniProtKB: A0A8I5ZYP4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447942   ⟸   XM_017592453
- Peptide Label: isoform X8
- UniProtKB: A0A8I5ZYP4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447938   ⟸   XM_017592449
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZYP4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447954   ⟸   XM_017592465
- Peptide Label: isoform X3
- UniProtKB: A0A8I5ZYP4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447950   ⟸   XM_017592461
- Peptide Label: isoform X41
- Sequence:
RefSeq Acc Id: XP_017447951   ⟸   XM_017592462
- Peptide Label: isoform X42
- Sequence:
RefSeq Acc Id: XP_017447948   ⟸   XM_017592459
- Peptide Label: isoform X27
- UniProtKB: D3ZSV9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447940   ⟸   XM_017592451
- Peptide Label: isoform X5
- UniProtKB: D3ZSV9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000011770   ⟸   ENSRNOT00000011770
RefSeq Acc Id: ENSRNOP00000047573   ⟸   ENSRNOT00000042291
RefSeq Acc Id: XP_038962964   ⟸   XM_039107036
- Peptide Label: isoform X15
- UniProtKB: D3ZSV9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038962961   ⟸   XM_039107033
- Peptide Label: isoform X12
- UniProtKB: D3ZSV9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038962970   ⟸   XM_039107042
- Peptide Label: isoform X34
- UniProtKB: A0A8I5ZYP4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038962965   ⟸   XM_039107037
- Peptide Label: isoform X21
- UniProtKB: D3ZSV9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038962966   ⟸   XM_039107038
- Peptide Label: isoform X23
- UniProtKB: A0A8I5ZYP4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038962967   ⟸   XM_039107039
- Peptide Label: isoform X26
- UniProtKB: A0A8I5ZYP4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038962969   ⟸   XM_039107041
- Peptide Label: isoform X33
- UniProtKB: A0A8I5ZYP4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038962968   ⟸   XM_039107040
- Peptide Label: isoform X28
- UniProtKB: D3ZSV9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038962963   ⟸   XM_039107035
- Peptide Label: isoform X13
- UniProtKB: D3ZSV9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038962962   ⟸   XM_039107034
- Peptide Label: isoform X13
- UniProtKB: D3ZSV9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000084216   ⟸   ENSRNOT00000095631
RefSeq Acc Id: ENSRNOP00000095265   ⟸   ENSRNOT00000103410
RefSeq Acc Id: ENSRNOP00000078444   ⟸   ENSRNOT00000103935
RefSeq Acc Id: XP_063141604   ⟸   XM_063285534
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063141605   ⟸   XM_063285535
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063141612   ⟸   XM_063285542
- Peptide Label: isoform X29
RefSeq Acc Id: XP_063141607   ⟸   XM_063285537
- Peptide Label: isoform X14
RefSeq Acc Id: XP_063141611   ⟸   XM_063285541
- Peptide Label: isoform X24
RefSeq Acc Id: XP_063141610   ⟸   XM_063285540
- Peptide Label: isoform X22
RefSeq Acc Id: XP_063141606   ⟸   XM_063285536
- Peptide Label: isoform X11
RefSeq Acc Id: XP_063141614   ⟸   XM_063285544
- Peptide Label: isoform X31
RefSeq Acc Id: XP_063141609   ⟸   XM_063285539
- Peptide Label: isoform X18
RefSeq Acc Id: XP_063141618   ⟸   XM_063285548
- Peptide Label: isoform X38
RefSeq Acc Id: XP_063141616   ⟸   XM_063285546
- Peptide Label: isoform X36
RefSeq Acc Id: XP_063141615   ⟸   XM_063285545
- Peptide Label: isoform X32
RefSeq Acc Id: XP_063141617   ⟸   XM_063285547
- Peptide Label: isoform X37
RefSeq Acc Id: XP_063141619   ⟸   XM_063285549
- Peptide Label: isoform X39
RefSeq Acc Id: XP_063141613   ⟸   XM_063285543
- Peptide Label: isoform X30
RefSeq Acc Id: XP_063141608   ⟸   XM_063285538
- Peptide Label: isoform X17
Protein Domains
PH   WW

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-E9PTG5-F1-model_v2 AlphaFold E9PTG5 1-1281 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693478
Promoter ID:EPDNEW_R4001
Type:initiation region
Name:Plekha5_1
Description:pleckstrin homology domain containing A5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R4002  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04174,605,425 - 174,605,485EPDNEW
RGD ID:13693479
Promoter ID:EPDNEW_R4002
Type:multiple initiation site
Name:Plekha5_2
Description:pleckstrin homology domain containing A5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R4001  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04174,692,511 - 174,692,571EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621175 AgrOrtholog
BioCyc Gene G2FUF-42538 BioCyc
Ensembl Genes ENSRNOG00000008747 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000011770.6 UniProtKB/TrEMBL
  ENSRNOT00000042291 ENTREZGENE
  ENSRNOT00000042291.7 UniProtKB/TrEMBL
  ENSRNOT00000095631.1 UniProtKB/TrEMBL
  ENSRNOT00000103410.1 UniProtKB/TrEMBL
  ENSRNOT00000103935.1 UniProtKB/TrEMBL
Gene3D-CATH 2.20.70.10 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:9032543 IMAGE-MGC_LOAD
InterPro PH_like_dom UniProtKB/TrEMBL
  PKHA4/5/6/7_PH UniProtKB/TrEMBL
  Pleckstrin_homology UniProtKB/TrEMBL
  WW_dom UniProtKB/TrEMBL
  WW_dom_sf UniProtKB/TrEMBL
KEGG Report rno:246237 UniProtKB/TrEMBL
MGC_CLONE MGC:187818 IMAGE-MGC_LOAD
NCBI Gene 246237 ENTREZGENE
PANTHER PHOSPHOINOSITOL 3-PHOSPHATE-BINDING PROTEIN UniProtKB/TrEMBL
  PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY A MEMBER 5 UniProtKB/TrEMBL
Pfam PF00169 UniProtKB/TrEMBL
  PF00397 UniProtKB/TrEMBL
PhenoGen Plekha5 PhenoGen
PROSITE PH_DOMAIN UniProtKB/TrEMBL
  WW_DOMAIN_1 UniProtKB/TrEMBL
  WW_DOMAIN_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000008747 RatGTEx
SMART SM00233 UniProtKB/TrEMBL
  SM00456 UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
  WW_Rsp5_WWP UniProtKB/TrEMBL
UniProt A0A8I5ZKV5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZYP4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AT62_RAT UniProtKB/TrEMBL
  A6IMN1_RAT UniProtKB/TrEMBL
  A6IMN2_RAT UniProtKB/TrEMBL
  A6IMN3_RAT UniProtKB/TrEMBL
  A6IMN4_RAT UniProtKB/TrEMBL
  B0BN71_RAT UniProtKB/TrEMBL
  D3ZSV9 ENTREZGENE, UniProtKB/TrEMBL
  E9PTG5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-30 Plekha5  pleckstrin homology domain containing A5  Plekha5  pleckstrin homology domain containing, family A member 5  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 Plekha5  pleckstrin homology domain containing, family A member 5  Pepp2  phosphoinositol 3-phosphate-binding protein 2  Symbol and Name updated 1299863 APPROVED
2002-08-07 Pepp2  phosphoinositol 3-phosphate-binding protein 2      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_expression all member of PEPP genes are on the X chromosome and preferentially expressed in reproductive tissues 724598