Prmt8 (protein arginine methyltransferase 8)

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Gene: Prmt8 (protein arginine methyltransferase 8) Rattus norvegicus

Analyze

Symbol:

Prmt8

Name:

protein arginine methyltransferase 8

RGD ID:

1587677

Description:

Predicted to enable several functions, including S-adenosyl-L-methionine binding activity; protein homodimerization activity; and protein-arginine N-methyltransferase activity. Predicted to be involved in histone methylation; peptidyl-arginine methylation, to asymmetrical-dimethyl arginine; and protein homooligomerization. Predicted to be located in cytoplasmic side of plasma membrane. Predicted to be active in plasma membrane. Orthologous to human PRMT8 (protein arginine methyltransferase 8); INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 17beta-estradiol 3-benzoate.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC688502; protein arginine N-methyltransferase 8; similar to Protein arginine N-methyltransferase 4 (Heterogeneous nuclear ribonucleoprotein methyltransferase-like protein 4)

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PRMT8 (protein arginine methyltransferase 8)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, Panther
Mus musculus (house mouse):	Prmt8 (protein arginine N-methyltransferase 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Prmt8 (protein arginine methyltransferase 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PRMT8 (protein arginine methyltransferase 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PRMT8 (protein arginine methyltransferase 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Prmt8 (protein arginine methyltransferase 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PRMT8 (protein arginine methyltransferase 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PRMT8 (protein arginine methyltransferase 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Prmt8 (protein arginine methyltransferase 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	PRMT1 (protein arginine methyltransferase 1)	HGNC	OrthoDB
Alliance orthologs ³
Mus musculus (house mouse):	Prmt8 (protein arginine N-methyltransferase 8)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	PRMT8 (protein arginine methyltransferase 8)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	prmt8b (protein arginine methyltransferase 8b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Art1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	HMT1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	prmt-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	4	160,535,813 - 160,618,193 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	160,535,813 - 160,617,930 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	166,765,769 - 166,847,117 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	4	162,548,690 - 162,630,028 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	4	161,182,745 - 161,264,101 (-)	NCBI	Rnor_WKY
Rnor_6.0	4	160,253,409 - 160,334,647 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	160,253,073 - 160,334,910 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	231,280,525 - 231,361,024 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	164,136,859 - 164,217,518 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	4	149,248,571 - 149,293,076 (-)	NCBI		Celera
Cytogenetic Map	4	q42	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Hyperphosphatemic Familial Tumoral Calcinosis 1 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (EXP)

17beta-estradiol 3-benzoate (EXP)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

atrazine (EXP)

avobenzone (ISO)

benzo[a]pyrene (ISO)

berberine (ISO)

bis(2-chloroethyl) sulfide (ISO)

bisphenol A (EXP,ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chloroprene (ISO)

cocaine (ISO)

dorsomorphin (ISO)

entinostat (ISO)

fulvestrant (ISO)

menadione (ISO)

methylmercury chloride (ISO)

N,N-diethyl-m-toluamide (EXP)

ozone (ISO)

PCB138 (ISO)

permethrin (EXP)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

potassium dichromate (ISO)

ribavirin (ISO)

rotenone (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sulforaphane (ISO)

testosterone (EXP)

titanium dioxide (EXP,ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

histone methylation (ISO)

peptidyl-arginine methylation (ISO)

peptidyl-arginine methylation, to asymmetrical-dimethyl arginine (ISO)

protein homooligomerization (ISO)

protein methylation (ISO)

Cellular Component

cellular_component (ND)

cytoplasmic side of plasma membrane (ISO)

nucleus (ISO)

obsolete anchored component of the cytoplasmic side of the plasma membrane (ISO)

plasma membrane (IBA,ISO)

Molecular Function

enzyme binding (ISO)

histone arginine N-methyltransferase activity (ISO)

identical protein binding (ISO)

molecular_function (ND)

protein binding (ISO)

protein homodimerization activity (ISO)

protein-arginine omega-N asymmetric methyltransferase activity (ISO)

protein-arginine omega-N monomethyltransferase activity (ISO)

S-adenosyl-L-methionine binding (ISO)

S-adenosylmethionine-dependent methyltransferase activity (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:16051612	PMID:16189514	PMID:17925405	PMID:18320585	PMID:19060904	PMID:23455924	PMID:25416956	PMID:26876602

Genomics

Comparative Map Data

Prmt8
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	4	160,535,813 - 160,618,193 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	160,535,813 - 160,617,930 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	166,765,769 - 166,847,117 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	4	162,548,690 - 162,630,028 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	4	161,182,745 - 161,264,101 (-)	NCBI	Rnor_WKY
Rnor_6.0	4	160,253,409 - 160,334,647 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	160,253,073 - 160,334,910 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	231,280,525 - 231,361,024 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	164,136,859 - 164,217,518 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	4	149,248,571 - 149,293,076 (-)	NCBI		Celera
Cytogenetic Map	4	q42	NCBI

PRMT8
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	3,381,349 - 3,593,973 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	12	3,381,349 - 3,593,973 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	3,490,515 - 3,703,139 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	3,470,686 - 3,573,400 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	12	5,214,206 - 5,316,768 (+)	NCBI		Celera
Cytogenetic Map	12	p13.32	NCBI
HuRef	12	3,346,677 - 3,558,964 (+)	NCBI		HuRef
CHM1_1	12	3,489,578 - 3,702,173 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	3,387,867 - 3,600,523 (+)	NCBI		T2T-CHM13v2.0

Prmt8
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	127,665,972 - 127,746,430 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	127,665,974 - 127,746,435 (-)	Ensembl		GRCm39 Ensembl
GRCm38	6	127,689,009 - 127,769,467 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	127,689,011 - 127,769,472 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	127,639,029 - 127,718,747 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	127,654,630 - 127,734,348 (-)	NCBI		MGSCv36	mm8
Celera	6	129,363,916 - 129,443,847 (-)	NCBI		Celera
Cytogenetic Map	6	F3	NCBI

Prmt8
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955413	1,323,356 - 1,409,770 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955413	1,323,436 - 1,409,188 (+)	NCBI	ChiLan1.0	ChiLan1.0

PRMT8
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	12	3,446,338 - 3,634,513 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	3,429,458 - 3,634,507 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	12	3,614,041 - 3,710,411 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

PRMT8
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	41,245,480 - 41,338,437 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	41,246,287 - 41,430,680 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	5,332,728 - 5,436,635 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	41,603,291 - 41,707,593 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	41,603,291 - 41,788,308 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	41,540,528 - 41,644,916 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	41,515,992 - 41,619,947 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	4,694,493 - 4,798,960 (+)	NCBI		UU_Cfam_GSD_1.0

Prmt8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	105,319,816 - 105,372,136 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936606	3,811,975 - 3,864,394 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936606	3,812,030 - 3,864,349 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PRMT8
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	66,667,899 - 66,838,922 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	66,667,695 - 66,754,281 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	68,944,977 - 69,060,975 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PRMT8
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	3,548,026 - 3,646,085 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	3,547,803 - 3,646,239 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666063	4,599,425 - 4,698,314 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Prmt8
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624860	751,360 - 831,809 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624860	751,366 - 831,680 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Prmt8
273 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	75
Count of miRNA genes:	63
Interacting mature miRNAs:	65
Transcripts:	ENSRNOT00000006878
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	11320076	180699135	Rat
1576316	Ept5	Estrogen-induced pituitary tumorigenesis QTL 5	3.8		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	4	83428419	177635233	Rat
1358202	Gluco11	Glucose level QTL 11	2.4	0.02	adipocyte glucose uptake trait (VT:0004185)	absolute change in adipocyte glucose uptake (CMO:0000873)	4	85379421	167139601	Rat
634335	Anxrr16	Anxiety related response QTL 16	7.22		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	4	93308457	167139447	Rat
737821	Hcar9	Hepatocarcinoma resistance QTL 9	3.7		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	4	109866907	167139601	Rat
1331759	Hrtrt13	Heart rate QTL 13	3.54628		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	4	110275411	168266883	Rat
724535	Cm18	Cardiac mass QTL 18	2.6		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	4	118856416	163856416	Rat
634347	Hcar8	Hepatocarcinoma resistance QTL 8	5.8		liver integrity trait (VT:0010547)	liver tumorous lesion area to total liver area ratio (CMO:0001075)	4	123143783	168143783	Rat
631683	Bp116	Blood pressure QTL 116		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	124303370	169303370	Rat
6478778	Anxrr51	Anxiety related response QTL 51		0.25384	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	4	124778595	169778595	Rat
7411558	Bw133	Body weight QTL 133	13.84	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	125590636	170590636	Rat
61451	Ciaa4	CIA Autoantibody QTL 4	3.1		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	4	126395976	167139601	Rat
737978	Pia23	Pristane induced arthritis QTL 23	5.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	131730738	167139601	Rat
631511	Pia7	Pristane induced arthritis QTL 7	4.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	131730738	167139601	Rat
1549827	Scl46	Serum cholesterol level QTL 46	3.5		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	4	132396220	177396220	Rat
724558	Plsm2	Polydactyly-luxate syndrome (PLS) morphotypes QTL 2		0.0003	hindlimb integrity trait (VT:0010563)	hind foot phalanges count (CMO:0001949)	4	132422778	177422778	Rat
61422	Cia13	Collagen induced arthritis QTL 13	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	132642577	167139601	Rat
2303623	Vencon2	Ventilatory control QTL 2	3.8		respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	4	135204660	180204660	Rat
1578674	Bmd12	Bone mineral density QTL 12	3.8		femur mineral mass (VT:0010011)	cortical volumetric bone mineral density (CMO:0001730)	4	135699135	180699135	Rat
2293659	Bmd35	Bone mineral density QTL 35	4.5	0.0001	femur strength trait (VT:0010010)	femoral neck ultimate force (CMO:0001703)	4	137755016	181392681	Rat
61362	Oia2	Oil induced arthritis QTL 2		0.001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	138503169	173369699	Rat
1298524	Oia8	Oil induced arthritis QTL 8			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	138503169	173369699	Rat
1331738	Bp209	Blood pressure QTL 209	2.979		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	138503169	179293946	Rat
6478718	Anxrr34	Anxiety related response QTL 34		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	144639524	182687754	Rat
6478748	Anxrr42	Anxiety related response QTL 42		0.28008	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	144639524	182687754	Rat
6478754	Anxrr43	Anxiety related response QTL 43		0.14035	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	144639524	182687754	Rat
6478693	Anxrr32	Anxiety related response QTL 32		0.00092	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	4	144639524	182687754	Rat
6478700	Anxrr33	Anxiety related response QTL 33		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	144639524	182687754	Rat
10401796	Kidm48	Kidney mass QTL 48			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	4	145568712	182687754	Rat
634342	Cia24	Collagen induced arthritis QTL 24	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	146565735	175236377	Rat
12798525	Anxrr57	Anxiety related response QTL 57	3.21	0.05	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	147278504	167139601	Rat
1582237	Kidm34	Kidney mass QTL 34	4	0.0001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	4	148090542	168069246	Rat
10053718	Scort25	Serum corticosterone level QTL 25	2.15	0.0097	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	155561574	182687754	Rat
1300109	Rf13	Renal function QTL 13	3.91		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	4	157710145	182687754	Rat

Markers in Region

27.MMHAP24FLA6.seq

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	160,562,536 - 160,562,667 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	160,280,124 - 160,280,254	NCBI	Rnor6.0
Rnor_5.0	4	231,334,179 - 231,334,309	UniSTS	Rnor5.0
RGSC_v3.4	4	164,162,759 - 164,162,889	UniSTS	RGSC3.4
Celera	4	149,275,296 - 149,275,426	UniSTS
Cytogenetic Map	4	q42	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium									72
Low		31	19	3	16	3	1	1	2	8	29	9	1
Below cutoff	3	12	13	13	2	13	7	8		13	11	2	7

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001271385	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039108363	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473964	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000150	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000086772 ⟹ ENSRNOP00000071703

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	160,535,813 - 160,617,930 (-)	Ensembl
Rnor_6.0 Ensembl	4	160,253,073 - 160,334,910 (-)	Ensembl

RefSeq Acc Id:

NM_001271385 ⟹ NP_001258314

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	160,535,813 - 160,617,176 (-)	NCBI
Rnor_6.0	4	160,253,409 - 160,334,647 (-)	NCBI
Rnor_5.0	4	231,280,525 - 231,361,024 (+)	NCBI
Celera	4	149,248,571 - 149,293,076 (-)	NCBI

Sequence:

show sequence

ATGGGCATGAAACACTCCTCCCGCTGCCTGCTCCTCCGGAGGAAAATGGCGGAGAACGCAGTCG
AAAGCACGGAGGTGAGCAGTGCCCCCCCTCAGCCCCCTCAGCCTGTCATTCCAGCGAAGCCTGT
GCAATGCGTCCACCATGTGTCCACACAGCCCAGCTGCCCAGGACGGGGCAAGATGTCCAAGCTG
CTGAATCCCGAGGAGATGACATCGAGAGATTACTATTTTGACTCATATGCTCACTTTGGGATCC
ACGAGGAAATGCTGAAGGATGAGGTGAGGACACTCACGTACCGGAACTCCATGTACCATAATAA
GCACGTGTTCAAGGACAAAGTGGTTCTGGATGTTGGGAGTGGTACAGGGATCCTTTCCATGTTT
GCTGCCAAAGCAGGGGCCAAGAAGGTGTTTGGGATTGAATGTTCCAGTATTTCTGACTACTCAG
AGAAGATCATTAAGGCCAACCACCTGGACAATGTCATTACCATATTTAAGGGCAAAGTGGAGGA
GGTGGAGCTGCCAGTGGAGAAGGTGGACATCATCATCAGCGAGTGGATGGGCTACTGTCTGTTC
TACGAGTCCATGCTCAACACCGTGATCTTTGCCAGGGACAAGTGGTTGAAACCTGGAGGGCTCA
TGTTTCCAGACCGGGCAGCTTTGTACGTGGTAGCAATTGAAGACAGACAGTACAAGGACTTCAA
AATCCACTGGTGGGAGAACGTCTATGGCTTTGACATGACTTGCATCCGGGATGTTGCTATGAAG
GAGCCCCTGGTGGATATCGTGGACCCAAAGCAAGTGGTGACCAATGCCTGTTTAATAAAGGAAG
TGGACATTTACACTGTGAAGACGGAAGAGCTGTCTTTTACATCTGCCTTCTGCCTGCAGATACA
GCGCAACGACTATGTCCATGCCCTCGTCACCTACTTTAATATTGAATTTACCAAGTGCCACAAG
AAAATGGGTTTTTCTACAGCCCCTGATGCCCCCTACACTCACTGGAAGCAGACTGTCTTCTACT
TAGAAGACTACCTCACTGTTCGAAGAGGGGAGGAAATCTACGGGACCATATCCATGAAGCCAAA
TGCCAAAAATGTGCGAGACCTCGATTTCACAGTAGACTTGGATTTTAAGGGACAGCTGTGTGAA
ACATCTGTATCTAATGACTACAAAATGCGTTAGCACATGTGGGAAGCTGCGGAGAGCAATCGAG
AAGAGGCACTCACTTCAGTCTGCCACGCTGCCCCAAGGAATACTGTTAAGAGGACCACACTCGA
CAACCAGAGCTTTCCACTCTGCCTTGAAGATTGGCGAACTCGCCCAGGGCTCTCCTGGGCCCCG
CTATCACAGGGAGCCTCCAGCTCCTCGGTTCTGCCCCTGGAGCCCTTCACAAAGGCTGTGTTGT
TGCCTTCCGTGCTGTGGCTGGGGCTCTGAGGAGGGAAGCATACCCATGTGCCCCCATTGTCCTA
AACTGACTCTCTGGATCTTCCAAGTTTTGCATGCTGCAGACATCTAGGACAGGTTACTTCTGCT
AGAACCTGGAGACATACGTCTTTGATAGCATAAGCCAGATTTTCTGTCTGTGTGGTGGTGGTGT
GTGTGAGCGTGTGTGCGTGCGTGCGTGCGCGCGCATGAGTATACAGCATATATATTATTTTACT
TGCCCACAAACATCTGTATATGCATGCATATACAACTAAGTGGGCATACTTGGGTGTTCATTCT
GAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGGTGGGTGTGTGC
GCCTAGAATCTATATTACTCTCAGAGGAGGTTCTGTTGCTTTTGGATAGGAATTTGTTTCGTGA
TTAGTTTTCCCCATCCCGATCCCTTAACAGATGTTACACAGCTATGAAACATTCTGTGTACTAG
CTCTGGTCTCGTTTTGACTAGACTGTGGCTCTGAATCCTGAGCACAGTACCATGGGCTCTGCGG
GCACTCAATAAACACACATGAGAAAGAA

hide sequence

RefSeq Acc Id:

XM_039108363 ⟹ XP_038964291

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	160,550,523 - 160,618,193 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001258314	(Get FASTA)	NCBI Sequence Viewer
	XP_038964291	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM01802	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001258314 ⟸ NM_001271385

- UniProtKB:

F1LWG2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGMKHSSRCLLLRRKMAENAVESTEVSSAPPQPPQPVIPAKPVQCVHHVSTQPSCPGRGKMSKL
LNPEEMTSRDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMYHNKHVFKDKVVLDVGSGTGILSMF
AAKAGAKKVFGIECSSISDYSEKIIKANHLDNVITIFKGKVEEVELPVEKVDIIISEWMGYCLF
YESMLNTVIFARDKWLKPGGLMFPDRAALYVVAIEDRQYKDFKIHWWENVYGFDMTCIRDVAMK
EPLVDIVDPKQVVTNACLIKEVDIYTVKTEELSFTSAFCLQIQRNDYVHALVTYFNIEFTKCHK
KMGFSTAPDAPYTHWKQTVFYLEDYLTVRRGEEIYGTISMKPNAKNVRDLDFTVDLDFKGQLCE
TSVSNDYKMR

hide sequence

RefSeq Acc Id:

ENSRNOP00000071703 ⟸ ENSRNOT00000086772

RefSeq Acc Id:	XP_038964291 ⟸ XM_039108363
- Peptide Label:	isoform X1

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1LWG2-F1-model_v2	AlphaFold	F1LWG2	1-394	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1587677	AgrOrtholog
BioCyc Gene	G2FUF-42927	BioCyc
Ensembl Genes	ENSRNOG00000053804	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000071703	ENTREZGENE
	ENSRNOP00000071703.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000086772	ENTREZGENE
	ENSRNOT00000086772.2	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.150	UniProtKB/TrEMBL
InterPro	Arg_MeTrfase	UniProtKB/TrEMBL
	SAM-dependent_MTases-like	UniProtKB/TrEMBL
KEGG Report	rno:688502	UniProtKB/TrEMBL
NCBI Gene	688502	ENTREZGENE
PANTHER	PTHR11006	UniProtKB/TrEMBL
PhenoGen	Prmt8	PhenoGen
PROSITE	SAM_MT_PRMT	UniProtKB/TrEMBL
Superfamily-SCOP	SSF53335	UniProtKB/TrEMBL
UniProt	F1LWG2	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2010-04-23	Prmt8	protein arginine methyltransferase 8	LOC688502	similar to Protein arginine N-methyltransferase 4 (Heterogeneous nuclear ribonucleoprotein methyltransferase-like protein 4)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-01-09	LOC688502	similar to Protein arginine N-methyltransferase 4 (Heterogeneous nuclear ribonucleoprotein methyltransferase-like protein 4)	LOC683275	similar to heterogeneous nuclear ribonucleoprotein methyltransferase-like 4	Data Merged	1643240	APPROVED
2006-11-19	LOC688502	similar to Protein arginine N-methyltransferase 4 (Heterogeneous nuclear ribonucleoprotein methyltransferase-like protein 4)			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-11-19	LOC683275	similar to heterogeneous nuclear ribonucleoprotein methyltransferase-like 4			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar