Zfand4 (zinc finger AN1-type containing 4) - Rat Genome Database

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Gene: Zfand4 (zinc finger AN1-type containing 4) Rattus norvegicus
Analyze
Symbol: Zfand4
Name: zinc finger AN1-type containing 4
RGD ID: 628707
Description: Predicted to enable zinc ion binding activity. Orthologous to human ZFAND4 (zinc finger AN1-type containing 4); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acrylamide; aflatoxin B1.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AN1, ubiquitin-like, homolog; AN1, ubiquitin-like, homolog (Xenopus laevis); AN1-type zinc finger and ubiquitin domain-containing protein 1; AN1-type zinc finger protein 4; Anubl1; Rsd7; testis-specific gene including a ubiquitin-likely domain; zinc finger, AN1-type domain 4
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84150,999,821 - 151,071,942 (+)NCBIGRCr8
mRatBN7.24149,327,339 - 149,399,495 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4149,327,412 - 149,399,487 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4155,556,084 - 155,626,746 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04151,340,118 - 151,410,781 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04149,963,020 - 150,033,685 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04148,198,810 - 148,270,273 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4148,199,102 - 148,268,405 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04214,144,903 - 214,216,253 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44152,403,931 - 152,476,350 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14152,648,884 - 152,700,038 (+)NCBI
Celera4138,212,199 - 138,282,557 (+)NCBICelera
Cytogenetic Map4q42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Information Derived from GenBank Report RGD, Sept. 2003
4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Genomics

Comparative Map Data
Zfand4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84150,999,821 - 151,071,942 (+)NCBIGRCr8
mRatBN7.24149,327,339 - 149,399,495 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4149,327,412 - 149,399,487 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4155,556,084 - 155,626,746 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04151,340,118 - 151,410,781 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04149,963,020 - 150,033,685 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04148,198,810 - 148,270,273 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4148,199,102 - 148,268,405 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04214,144,903 - 214,216,253 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44152,403,931 - 152,476,350 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14152,648,884 - 152,700,038 (+)NCBI
Celera4138,212,199 - 138,282,557 (+)NCBICelera
Cytogenetic Map4q42NCBI
ZFAND4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381045,615,500 - 45,672,813 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1045,615,500 - 45,672,780 (-)EnsemblGRCh38hg38GRCh38
GRCh371046,110,948 - 46,168,261 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361045,431,049 - 45,487,802 (-)NCBINCBI36Build 36hg18NCBI36
Build 341045,431,049 - 45,487,802NCBI
Celera1042,108,967 - 42,166,179 (-)NCBICelera
Cytogenetic Map10q11.22NCBI
HuRef1042,634,888 - 42,692,337 (-)NCBIHuRef
CHM1_11046,150,262 - 46,207,492 (-)NCBICHM1_1
T2T-CHM13v2.01046,496,511 - 46,553,811 (-)NCBIT2T-CHM13v2.0
Zfand4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396116,241,046 - 116,310,384 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6116,241,183 - 116,307,263 (+)EnsemblGRCm39 Ensembl
GRCm386116,263,594 - 116,333,423 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6116,264,222 - 116,330,302 (+)EnsemblGRCm38mm10GRCm38
MGSCv376116,214,253 - 116,279,645 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366116,229,854 - 116,295,246 (+)NCBIMGSCv36mm8
Celera6118,102,481 - 118,167,748 (+)NCBICelera
Cytogenetic Map6E3NCBI
cM Map653.77NCBI
Zfand4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555462,666,182 - 2,716,317 (-)NCBIChiLan1.0ChiLan1.0
ZFAND4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2858,438,269 - 58,499,153 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11058,443,598 - 58,504,482 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01042,697,963 - 42,758,825 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11045,877,008 - 45,937,549 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1045,877,008 - 45,937,539 (-)Ensemblpanpan1.1panPan2
ZFAND4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1281,926,028 - 1,987,995 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl281,926,067 - 1,987,995 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha282,160,220 - 2,221,723 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0282,103,743 - 2,165,920 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl282,110,340 - 2,170,796 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1281,900,471 - 1,962,313 (+)NCBIUMICH_Zoey_3.1
UU_Cfam_GSD_1.0282,070,038 - 2,132,007 (+)NCBIUU_Cfam_GSD_1.0
Zfand4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721378,969,108 - 79,058,330 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936728172,755 - 249,516 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936728172,242 - 261,020 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZFAND4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1490,643,582 - 90,710,505 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11490,643,536 - 90,711,273 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21498,686,372 - 98,756,836 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZFAND4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1941,313,473 - 41,372,725 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl941,313,682 - 41,371,030 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660481,006,913 - 1,064,934 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zfand4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624966388,278 - 434,528 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Zfand4
335 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:30
Count of miRNA genes:29
Interacting mature miRNAs:30
Transcripts:ENSRNOT00000015742
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1582237Kidm34Kidney mass QTL 3440.0001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)4148090542168069246Rat
61446Coreg2Compensatory renal growth QTL 23.5kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)4148423102157580971Rat
1300116Hrtrt5Heart rate QTL 53.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)4116179486151161268Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4144639524182687754Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)426775591168368347Rat
631683Bp116Blood pressure QTL 1160.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4124303370169303370Rat
61451Ciaa4CIA Autoantibody QTL 43.1blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)4126395976167139601Rat
1331738Bp209Blood pressure QTL 2092.979arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)4138503169179293946Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
1549827Scl46Serum cholesterol level QTL 463.5blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)4132396220177396220Rat
731165Uae21Urinary albumin excretion QTL 212.40.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)4106649412151649412Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4109866907167139601Rat
7411558Bw133Body weight QTL 13313.840.001body mass (VT:0001259)body weight gain (CMO:0000420)4125590636170590636Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4145568712182687754Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
1549832Bss3Bone structure and strength QTL 311femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)4109827074154827074Rat
70177Xhs1X-ray hypersensitivity QTL 125.1intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)482798864152731274Rat
2303623Vencon2Ventilatory control QTL 23.8respiration trait (VT:0001943)minute ventilation (CMO:0000132)4135204660180204660Rat
1578674Bmd12Bone mineral density QTL 123.8femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)4135699135180699135Rat
737978Pia23Pristane induced arthritis QTL 235.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4131730738167139601Rat
61362Oia2Oil induced arthritis QTL 20.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4138503169173369699Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)456647873149491524Rat
2293659Bmd35Bone mineral density QTL 354.50.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)4137755016181392681Rat
1331759Hrtrt13Heart rate QTL 133.54628heart pumping trait (VT:2000009)heart rate (CMO:0000002)4110275411168266883Rat
724535Cm18Cardiac mass QTL 182.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)4118856416163856416Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4144639524182687754Rat
2302049Pia32Pristane induced arthritis QTL 325.10.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)4105789505150789505Rat
724558Plsm2Polydactyly-luxate syndrome (PLS) morphotypes QTL 20.0003hindlimb integrity trait (VT:0010563)hind foot phalanges count (CMO:0001949)4132422778177422778Rat
6478763Anxrr46Anxiety related response QTL 460.07428locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
6478760Anxrr45Anxiety related response QTL 450.06717locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
1331802Srn5Serum renin concentration QTL 53.045renin activity (VT:0005581)plasma renin activity level (CMO:0000116)4119428175157578333Rat
1298524Oia8Oil induced arthritis QTL 8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4138503169173369699Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)459948935154902892Rat
7207480Bss105Bone structure and strength QTL 1058.1femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)4109827074154827074Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)493308457167139447Rat
6478778Anxrr51Anxiety related response QTL 510.25384locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4124778595169778595Rat
631511Pia7Pristane induced arthritis QTL 74.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4131730738167139601Rat
61406Scwia1Streptococcal cell wall induced arthritis QTL 12.3joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)4106805662151805662Rat
634347Hcar8Hepatocarcinoma resistance QTL 85.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)4123143783168143783Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)483428419177635233Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)444463720155883716Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)485379421167139601Rat
61422Cia13Collagen induced arthritis QTL 134.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4132642577167139601Rat
634342Cia24Collagen induced arthritis QTL 244.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4146565735175236377Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)464528739157573521Rat
12798519Anxrr54Anxiety related response QTL 542.540.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4114627026159627026Rat
12798523Anxrr56Anxiety related response QTL 562.830.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)485253748150276390Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
12798525Anxrr57Anxiety related response QTL 573.210.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4147278504167139601Rat

Markers in Region
D4Rat83  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24149,368,097 - 149,368,240 (+)MAPPERmRatBN7.2
Rnor_6.04148,238,860 - 148,239,000NCBIRnor6.0
Rnor_5.04214,184,861 - 214,185,001UniSTSRnor5.0
RGSC_v3.44152,446,157 - 152,446,399RGDRGSC3.4
RGSC_v3.44152,446,207 - 152,446,347UniSTSRGSC3.4
RGSC_v3.14152,691,048 - 152,691,188RGD
Celera4138,253,074 - 138,253,214UniSTS
RH 3.4 Map4951.8RGD
RH 3.4 Map4951.8UniSTS
RH 2.0 Map4943.1RGD
FHH x ACI Map487.92RGD
Cytogenetic Map4q42UniSTS
RH130293  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24149,325,608 - 149,325,767 (+)MAPPERmRatBN7.2
Rnor_6.04148,197,120 - 148,197,278NCBIRnor6.0
Rnor_5.04214,143,121 - 214,143,279UniSTSRnor5.0
RGSC_v3.44152,402,062 - 152,402,220UniSTSRGSC3.4
Celera4138,210,330 - 138,210,488UniSTS
RH 3.4 Map4969.12UniSTS
Cytogenetic Map4q42UniSTS
RH136774  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24149,399,046 - 149,399,128 (+)MAPPERmRatBN7.2
Rnor_6.04148,269,830 - 148,269,911NCBIRnor6.0
Rnor_5.04214,215,810 - 214,215,891UniSTSRnor5.0
RGSC_v3.44152,477,777 - 152,477,858UniSTSRGSC3.4
Celera4138,283,984 - 138,284,065UniSTS
RH 3.4 Map4968.3UniSTS
Cytogenetic Map4q42UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_173332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006237141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006237142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006237143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006237145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006237146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008763225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF315467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC078692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC162051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000015742   ⟹   ENSRNOP00000015742
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4149,327,412 - 149,399,487 (+)Ensembl
Rnor_6.0 Ensembl4148,208,260 - 148,268,405 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000083563   ⟹   ENSRNOP00000074111
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4149,327,591 - 149,376,466 (+)Ensembl
Rnor_6.0 Ensembl4148,199,102 - 148,247,250 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000099009   ⟹   ENSRNOP00000088081
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4149,327,423 - 149,397,523 (+)Ensembl
RefSeq Acc Id: NM_173332   ⟹   NP_775454
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84150,999,856 - 151,071,942 (+)NCBI
mRatBN7.24149,327,405 - 149,399,495 (+)NCBI
Rnor_6.04148,198,989 - 148,268,403 (+)NCBI
Rnor_5.04214,144,903 - 214,216,253 (+)NCBI
RGSC_v3.44152,403,931 - 152,476,350 (+)RGD
Celera4138,212,199 - 138,282,557 (+)RGD
Sequence:
RefSeq Acc Id: XM_006237141   ⟹   XP_006237203
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84150,999,961 - 151,071,937 (+)NCBI
mRatBN7.24149,327,522 - 149,399,490 (+)NCBI
Rnor_6.04148,199,039 - 148,270,273 (+)NCBI
Rnor_5.04214,144,903 - 214,216,253 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039107167   ⟹   XP_038963095
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84150,999,961 - 151,071,937 (+)NCBI
mRatBN7.24149,327,520 - 149,399,490 (+)NCBI
RefSeq Acc Id: XM_039107168   ⟹   XP_038963096
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84150,999,821 - 151,071,937 (+)NCBI
mRatBN7.24149,327,370 - 149,399,490 (+)NCBI
RefSeq Acc Id: XM_039107170   ⟹   XP_038963098
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84150,999,893 - 151,071,937 (+)NCBI
mRatBN7.24149,327,438 - 149,399,490 (+)NCBI
RefSeq Acc Id: XM_039107172   ⟹   XP_038963100
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84150,999,961 - 151,070,069 (+)NCBI
mRatBN7.24149,327,522 - 149,397,535 (+)NCBI
RefSeq Acc Id: XM_039107173   ⟹   XP_038963101
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84151,009,361 - 151,071,937 (+)NCBI
mRatBN7.24149,336,919 - 149,399,490 (+)NCBI
RefSeq Acc Id: XM_039107174   ⟹   XP_038963102
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84151,031,847 - 151,071,937 (+)NCBI
mRatBN7.24149,359,410 - 149,399,490 (+)NCBI
RefSeq Acc Id: XM_039107177   ⟹   XP_038963105
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84151,009,364 - 151,071,937 (+)NCBI
mRatBN7.24149,336,919 - 149,399,490 (+)NCBI
RefSeq Acc Id: XM_039107179   ⟹   XP_038963107
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84150,999,961 - 151,059,446 (+)NCBI
mRatBN7.24149,327,522 - 149,386,895 (+)NCBI
RefSeq Acc Id: XM_063285657   ⟹   XP_063141727
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84150,999,848 - 151,071,937 (+)NCBI
RefSeq Acc Id: XM_063285658   ⟹   XP_063141728
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84151,001,031 - 151,071,937 (+)NCBI
RefSeq Acc Id: XM_063285659   ⟹   XP_063141729
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84150,999,840 - 151,071,937 (+)NCBI
RefSeq Acc Id: XM_063285660   ⟹   XP_063141730
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84150,999,961 - 151,071,937 (+)NCBI
RefSeq Acc Id: XM_063285661   ⟹   XP_063141731
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84151,009,364 - 151,071,937 (+)NCBI
RefSeq Acc Id: XM_063285662   ⟹   XP_063141732
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84151,035,149 - 151,071,937 (+)NCBI
RefSeq Acc Id: NP_775454   ⟸   NM_173332
- UniProtKB: F7EY43 (UniProtKB/TrEMBL),   B1WC93 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006237203   ⟸   XM_006237141
- Peptide Label: isoform X3
- UniProtKB: B1WC93 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000074111   ⟸   ENSRNOT00000083563
Ensembl Acc Id: ENSRNOP00000015742   ⟸   ENSRNOT00000015742
RefSeq Acc Id: XP_038963096   ⟸   XM_039107168
- Peptide Label: isoform X2
- UniProtKB: B1WC93 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963098   ⟸   XM_039107170
- Peptide Label: isoform X2
- UniProtKB: B1WC93 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963095   ⟸   XM_039107167
- Peptide Label: isoform X1
- UniProtKB: B1WC93 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963100   ⟸   XM_039107172
- Peptide Label: isoform X4
- UniProtKB: B1WC93 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963107   ⟸   XM_039107179
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038963101   ⟸   XM_039107173
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038963105   ⟸   XM_039107177
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038963102   ⟸   XM_039107174
- Peptide Label: isoform X5
Ensembl Acc Id: ENSRNOP00000088081   ⟸   ENSRNOT00000099009
RefSeq Acc Id: XP_063141729   ⟸   XM_063285659
- Peptide Label: isoform X3
- UniProtKB: B1WC93 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141727   ⟸   XM_063285657
- Peptide Label: isoform X1
- UniProtKB: B1WC93 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141730   ⟸   XM_063285660
- Peptide Label: isoform X3
- UniProtKB: B1WC93 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141728   ⟸   XM_063285658
- Peptide Label: isoform X1
- UniProtKB: B1WC93 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141731   ⟸   XM_063285661
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063141732   ⟸   XM_063285662
- Peptide Label: isoform X7
Protein Domains
AN1-type   Ubiquitin-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B1WC93-F1-model_v2 AlphaFold B1WC93 1-704 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:628707 AgrOrtholog
BioCyc Gene G2FUF-43300 BioCyc
Ensembl Genes ENSRNOG00000011791 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000015742.7 UniProtKB/TrEMBL
  ENSRNOT00000083563.2 UniProtKB/TrEMBL
  ENSRNOT00000099009.1 UniProtKB/TrEMBL
Gene3D-CATH 4.10.1110.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7112072 IMAGE-MGC_LOAD
InterPro AN1-like_Znf UniProtKB/TrEMBL
  AN1-type_zinc_finger UniProtKB/TrEMBL
  Ubiquitin UniProtKB/TrEMBL
  Ubiquitin-rel_dom UniProtKB/TrEMBL
  Ubiquitin_subgr UniProtKB/TrEMBL
  Znf_AN1 UniProtKB/TrEMBL
KEGG Report rno:286998 UniProtKB/TrEMBL
MGC_CLONE MGC:188031 IMAGE-MGC_LOAD
NCBI Gene 286998 ENTREZGENE
PANTHER AN1-TYPE ZINC FINGER PROTEIN 4 UniProtKB/TrEMBL
  AN1-TYPE ZINC FINGER PROTEIN 4 UniProtKB/TrEMBL
Pfam ubiquitin UniProtKB/TrEMBL
  zf-AN1 UniProtKB/TrEMBL
PhenoGen Zfand4 PhenoGen
PRINTS UBIQUITIN UniProtKB/TrEMBL
PROSITE UBIQUITIN_2 UniProtKB/TrEMBL
  ZF_AN1 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000011791 RatGTEx
SMART UBQ UniProtKB/TrEMBL
  ZnF_AN1 UniProtKB/TrEMBL
Superfamily-SCOP SSF118310 UniProtKB/TrEMBL
  SSF54236 UniProtKB/TrEMBL
UniProt A0A8I6GGQ2_RAT UniProtKB/TrEMBL
  B1WC93 ENTREZGENE, UniProtKB/TrEMBL
  F7EY43 ENTREZGENE, UniProtKB/TrEMBL
  Q99PD3_RAT UniProtKB/TrEMBL
UniProt Secondary A6IL13 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-17 Zfand4  zinc finger AN1-type containing 4  Zfand4  zinc finger, AN1-type domain 4  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-07-13 Zfand4  zinc finger, AN1-type domain 4  Anubl1  AN1, ubiquitin-like, homolog (Xenopus laevis)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-25 Anubl1  AN1, ubiquitin-like, homolog (Xenopus laevis)  Anubl1  testis-specific gene including a ubiquitin-likely domain  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Anubl1  testis-specific gene including a ubiquitin-likely domain  Rsd7    Symbol and Name updated 1299863 APPROVED
2003-02-27 Rsd7  testis-specific gene including a ubiquitin-likely domain      Symbol and Name status set to provisional 70820 PROVISIONAL