Gabarapl1 (GABA type A receptor associated protein like 1) - Rat Genome Database

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Gene: Gabarapl1 (GABA type A receptor associated protein like 1) Rattus norvegicus
Analyze
Symbol: Gabarapl1
Name: GABA type A receptor associated protein like 1
RGD ID: 1596143
Description: Predicted to enable several functions, including Tat protein binding activity; phosphatidylethanolamine binding activity; and ubiquitin protein ligase binding activity. Predicted to be involved in autophagy of mitochondrion; cellular response to nitrogen starvation; and macroautophagy. Located in cell body; dendrite cytoplasm; and dendrite membrane. Orthologous to human GABARAPL1 (GABA type A receptor associated protein like 1); PARTICIPATES IN autophagy pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: GABA(A) receptor-associated protein like 1; GABA(A) receptor-associated protein-like 1; gamma-aminobutyric acid (GABA(A)) receptor-associated protein-like 1; gamma-aminobutyric acid receptor-associated protein-like 1; GEC-1; Gec1; glandular epithelial cell protein 1; MGC125167; similar to gamma-aminobutyric acid (GABA(A)) receptor-associated protein-like 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84164,666,332 - 164,675,474 (+)NCBIGRCr8
mRatBN7.24162,980,309 - 162,989,452 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4162,980,249 - 162,989,450 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4169,215,126 - 169,224,269 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04164,998,073 - 165,007,216 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04163,632,124 - 163,641,266 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04163,293,724 - 163,302,866 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4163,293,724 - 163,302,858 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04211,937,475 - 211,946,617 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44166,802,106 - 166,811,249 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4151,664,636 - 151,673,783 (+)NCBICelera
Cytogenetic Map4q42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
COVID-19  (ISO)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (EXP)
4-hydroxynon-2-enal  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrolein  (EXP)
acrylamide  (EXP)
adefovir pivoxil  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
atrazine  (ISO)
avobenzone  (ISO)
benzene  (ISO)
benzo[a]pyrene  (ISO)
benzoates  (ISO)
beta-naphthoflavone  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
bortezomib  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
chloroacetaldehyde  (ISO)
cidofovir anhydrous  (ISO)
cisplatin  (ISO)
clodronic acid  (ISO)
cobalt dichloride  (EXP,ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
crotonaldehyde  (ISO)
CU-O LINKAGE  (ISO)
cyclosporin A  (ISO)
cytarabine  (ISO)
DDE  (ISO)
diallyl trisulfide  (ISO)
dibenzofurans  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP,ISO)
dicrotophos  (ISO)
dioxygen  (ISO)
doxorubicin  (ISO)
doxycycline  (ISO)
enniatin  (EXP)
erastin  (ISO)
ethanol  (ISO)
folic acid  (ISO)
glafenine  (EXP)
hydrogen peroxide  (ISO)
inulin  (ISO)
iron dichloride  (ISO)
isoprenaline  (ISO)
leflunomide  (EXP)
mercury dibromide  (ISO)
methimazole  (EXP)
methylisothiazolinone  (ISO)
methylmercury chloride  (ISO)
methylseleninic acid  (ISO)
microcystin-LR  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
N-methylformamide  (ISO)
nickel atom  (ISO)
nickel sulfate  (ISO)
niclosamide  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
p-chloromercuribenzoic acid  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
parathion  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenethyl isothiocyanate  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
rotenone  (EXP,ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sirolimus  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (EXP)
sulforaphane  (ISO)
tetrachloromethane  (ISO)
theophylline  (ISO)
thiram  (ISO)
titanium dioxide  (ISO)
topotecan  (EXP)
triphenyl phosphate  (ISO)
troglitazone  (ISO)
trovafloxacin  (ISO)
tunicamycin  (ISO)
urethane  (ISO)
valdecoxib  (EXP)
valproic acid  (ISO)
vinclozolin  (EXP)
zinc atom  (ISO)
zinc(0)  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
autophagy pathway  (IEA,ISO)

References

References - curated
# Reference Title Reference Citation
1. Network organization of the human autophagy system. Behrends C, etal., Nature. 2010 Jul 1;466(7302):68-76. Epub 2010 Jun 20.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Comprehensive gene review and curation RGD comprehensive gene curation
7. Identification of HSP90 as a new GABARAPL1 (GEC1)-interacting protein. Seguin-Py S, etal., Biochimie. 2011 Nov 20.
8. Distribution and ultrastructural localization of GEC1 in the rat CNS. Wang Y, etal., Neuroscience. 2006 Jul 21;140(4):1265-76. Epub 2006 May 2.
Additional References at PubMed
PMID:12477932   PMID:15292400   PMID:18423580   PMID:19524128   PMID:20200478   PMID:22354992   PMID:25127057  


Genomics

Comparative Map Data
Gabarapl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84164,666,332 - 164,675,474 (+)NCBIGRCr8
mRatBN7.24162,980,309 - 162,989,452 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4162,980,249 - 162,989,450 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4169,215,126 - 169,224,269 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04164,998,073 - 165,007,216 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04163,632,124 - 163,641,266 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04163,293,724 - 163,302,866 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4163,293,724 - 163,302,858 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04211,937,475 - 211,946,617 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44166,802,106 - 166,811,249 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4151,664,636 - 151,673,783 (+)NCBICelera
Cytogenetic Map4q42NCBI
GABARAPL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381210,212,877 - 10,223,128 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1210,212,458 - 10,223,128 (+)EnsemblGRCh38hg38GRCh38
GRCh371210,365,476 - 10,375,727 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361210,256,756 - 10,266,994 (+)NCBINCBI36Build 36hg18NCBI36
Build 341210,256,755 - 10,266,989NCBI
Celera1215,526,610 - 15,536,854 (+)NCBICelera
Cytogenetic Map12p13.2NCBI
HuRef1210,108,873 - 10,119,144 (+)NCBIHuRef
CHM1_11210,334,782 - 10,345,019 (+)NCBICHM1_1
T2T-CHM13v2.01210,099,612 - 10,109,862 (+)NCBIT2T-CHM13v2.0
Gabarapl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396129,510,155 - 129,519,294 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6129,510,123 - 129,519,309 (+)EnsemblGRCm39 Ensembl
GRCm386129,533,192 - 129,542,331 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6129,533,160 - 129,542,346 (+)EnsemblGRCm38mm10GRCm38
MGSCv376129,483,210 - 129,492,349 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366129,498,885 - 129,508,024 (+)NCBIMGSCv36mm8
Celera6131,256,899 - 131,266,042 (+)NCBICelera
Cytogenetic Map6F3NCBI
cM Map663.39NCBI
Gabarapl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554137,653,396 - 7,661,835 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554137,653,396 - 7,661,835 (-)NCBIChiLan1.0ChiLan1.0
GABARAPL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21015,693,325 - 15,703,905 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11215,690,411 - 15,700,667 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01210,251,006 - 10,261,292 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11210,501,694 - 10,511,880 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1210,501,694 - 10,511,880 (+)Ensemblpanpan1.1panPan2
GABARAPL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12735,783,203 - 35,791,576 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2735,782,330 - 35,791,569 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2710,832,076 - 10,840,433 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02736,129,419 - 36,137,791 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2736,128,546 - 36,137,800 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12736,017,634 - 36,026,003 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02736,039,664 - 36,048,013 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02710,353,533 - 10,361,896 (+)NCBIUU_Cfam_GSD_1.0
Gabarapl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494597,232,591 - 97,241,104 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936902362,282 - 373,459 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936902364,158 - 372,888 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GABARAPL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl561,758,130 - 61,767,601 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1561,758,127 - 61,767,427 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2564,622,416 - 64,631,775 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GABARAPL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11110,087,582 - 10,099,125 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1110,087,604 - 10,096,612 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660892,162,836 - 2,174,383 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gabarapl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475226,971,187 - 26,981,929 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475226,971,266 - 26,979,483 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gabarapl1
109 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:265
Count of miRNA genes:180
Interacting mature miRNAs:197
Transcripts:ENSRNOT00000011942
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4144639524182687754Rat
724558Plsm2Polydactyly-luxate syndrome (PLS) morphotypes QTL 20.0003hindlimb integrity trait (VT:0010563)hind foot phalanges count (CMO:0001949)4132422778177422778Rat
1582237Kidm34Kidney mass QTL 3440.0001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)4148090542168069246Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4144639524182687754Rat
631683Bp116Blood pressure QTL 1160.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4124303370169303370Rat
61451Ciaa4CIA Autoantibody QTL 43.1blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)4126395976167139601Rat
1331738Bp209Blood pressure QTL 2092.979arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)4138503169179293946Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
1298524Oia8Oil induced arthritis QTL 8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4138503169173369699Rat
10053718Scort25Serum corticosterone level QTL 252.150.0097blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)4155561574182687754Rat
1549827Scl46Serum cholesterol level QTL 463.5blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)4132396220177396220Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)493308457167139447Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4109866907167139601Rat
7411558Bw133Body weight QTL 13313.840.001body mass (VT:0001259)body weight gain (CMO:0000420)4125590636170590636Rat
6478778Anxrr51Anxiety related response QTL 510.25384locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4124778595169778595Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4145568712182687754Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
631511Pia7Pristane induced arthritis QTL 74.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4131730738167139601Rat
1300109Rf13Renal function QTL 133.91renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)4157710145182687754Rat
634347Hcar8Hepatocarcinoma resistance QTL 85.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)4123143783168143783Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)483428419177635233Rat
2303623Vencon2Ventilatory control QTL 23.8respiration trait (VT:0001943)minute ventilation (CMO:0000132)4135204660180204660Rat
1578674Bmd12Bone mineral density QTL 123.8femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)4135699135180699135Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)485379421167139601Rat
61422Cia13Collagen induced arthritis QTL 134.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4132642577167139601Rat
634342Cia24Collagen induced arthritis QTL 244.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4146565735175236377Rat
737978Pia23Pristane induced arthritis QTL 235.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4131730738167139601Rat
61362Oia2Oil induced arthritis QTL 20.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4138503169173369699Rat
2293659Bmd35Bone mineral density QTL 354.50.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)4137755016181392681Rat
1331759Hrtrt13Heart rate QTL 133.54628heart pumping trait (VT:2000009)heart rate (CMO:0000002)4110275411168266883Rat
724535Cm18Cardiac mass QTL 182.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)4118856416163856416Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
12798525Anxrr57Anxiety related response QTL 573.210.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4147278504167139601Rat

Markers in Region
RH141590  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24162,979,557 - 162,979,762 (+)MAPPERmRatBN7.2
Rnor_6.04163,292,973 - 163,293,177NCBIRnor6.0
Rnor_5.04211,936,724 - 211,936,928UniSTSRnor5.0
RGSC_v3.44166,801,355 - 166,801,559UniSTSRGSC3.4
Celera4151,663,885 - 151,664,089UniSTS
RH 3.4 Map41013.4UniSTS
Cytogenetic Map4q42UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000077356   ⟹   ENSRNOP00000075223
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4162,980,249 - 162,989,450 (+)Ensembl
Rnor_6.0 Ensembl4163,293,724 - 163,302,858 (+)Ensembl
RefSeq Acc Id: NM_001044294   ⟹   NP_001037759
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84164,666,332 - 164,675,474 (+)NCBI
mRatBN7.24162,980,309 - 162,989,452 (+)NCBI
Rnor_6.04163,293,724 - 163,302,866 (+)NCBI
Rnor_5.04211,937,475 - 211,946,617 (+)NCBI
RGSC_v3.44166,802,106 - 166,811,249 (+)RGD
Celera4151,664,636 - 151,673,783 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001037759 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI05628 (Get FASTA)   NCBI Sequence Viewer  
  EDM01729 (Get FASTA)   NCBI Sequence Viewer  
  EDM01731 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000075223.2
GenBank Protein Q0VGK0 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001037759   ⟸   NM_001044294
- UniProtKB: Q0VGK0 (UniProtKB/Swiss-Prot),   A6IM58 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000075223   ⟸   ENSRNOT00000077356

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q0VGK0-F1-model_v2 AlphaFold Q0VGK0 1-117 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693438
Promoter ID:EPDNEW_R3963
Type:initiation region
Name:Gabarapl1_1
Description:GABA type A receptor associated protein like 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04163,293,645 - 163,293,705EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1596143 AgrOrtholog
BioCyc Gene G2FUF-42773 BioCyc
Ensembl Genes ENSRNOG00000053362 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000077356.2 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7323087 IMAGE-MGC_LOAD
InterPro Atg8-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:689161 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:125167 IMAGE-MGC_LOAD
NCBI Gene 689161 ENTREZGENE
PANTHER GABA TYPE A RECEPTOR ASSOCIATED PROTEIN LIKE 1 UniProtKB/TrEMBL
  GAMMA-AMINOBUTYRIC ACID RECEPTOR-ASSOCIATED PROTEIN-LIKE 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10969 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Atg8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Gabarapl1 PhenoGen
RatGTEx ENSRNOG00000053362 RatGTEx
Superfamily-SCOP SSF54236 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8L2RBX1_RAT UniProtKB/TrEMBL
  A6IM58 ENTREZGENE, UniProtKB/TrEMBL
  GBRL1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-29 Gabarapl1  GABA type A receptor associated protein like 1  Gabarapl1  GABA(A) receptor-associated protein like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-19 Gabarapl1  GABA(A) receptor-associated protein like 1  Gabarapl1  gamma-aminobutyric acid (GABA(A)) receptor-associated protein-like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-06 Gabarapl1  gamma-aminobutyric acid (GABA(A)) receptor-associated protein-like 1  MGC125167  similar to gamma-aminobutyric acid (GABA(A)) receptor-associated protein-like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 MGC125167  similar to gamma-aminobutyric acid (GABA(A)) receptor-associated protein-like 1  LOC683917  similar to gamma-aminobutyric acid (GABA(A)) receptor-associated protein-like 1  Data merged from RGD:1596576 1643240 APPROVED
2006-11-20 MGC125167  similar to gamma-aminobutyric acid (GABA(A)) receptor-associated protein-like 1      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC683917  similar to gamma-aminobutyric acid (GABA(A)) receptor-associated protein-like 1      Symbol and Name status set to provisional 70820 PROVISIONAL