Rerg (RAS-like, estrogen-regulated, growth-inhibitor) - Rat Genome Database

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Gene: Rerg (RAS-like, estrogen-regulated, growth-inhibitor) Rattus norvegicus
Analyze
Symbol: Rerg
Name: RAS-like, estrogen-regulated, growth-inhibitor
RGD ID: 1562829
Description: Predicted to enable GDP binding activity; GTP binding activity; and GTPase activity. Predicted to be involved in negative regulation of cell growth; negative regulation of cell population proliferation; and response to hormone. Predicted to be located in cytosol; fibrillar center; and nucleoplasm. Predicted to be active in plasma membrane. Orthologous to human RERG (RAS like estrogen regulated growth inhibitor); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC502916; ras-related and estrogen-regulated growth inhibitor; RGD1562829; similar to RAS-like, estrogen-regulated, growth-inhibitor
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24169,981,634 - 170,089,777 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4169,982,279 - 170,089,715 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4176,272,579 - 176,380,808 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.04172,058,062 - 172,166,158 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.04170,678,240 - 170,786,470 (-)NCBIRnor_WKY
Rnor_6.04171,069,161 - 171,176,678 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4171,069,191 - 171,176,581 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04235,326,498 - 235,433,862 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44174,125,313 - 174,140,346 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4158,562,739 - 158,670,744 (-)NCBICelera
Cytogenetic Map4q43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IEA,ISO)
fibrillar center  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (ISO)
plasma membrane  (IBA)

Molecular Function
GDP binding  (IBA)
GTP binding  (IBA)
GTPase activity  (IBA,ISO)

References

References - curated
# Reference Title Reference Citation
1. RERG is a novel ras-related, estrogen-regulated and growth-inhibitory gene in breast cancer. Finlin BS, etal., J Biol Chem 2001 Nov 9;276(45):42259-67. Epub 2001 Aug 31.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:30361391  


Genomics

Comparative Map Data
Rerg
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24169,981,634 - 170,089,777 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4169,982,279 - 170,089,715 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4176,272,579 - 176,380,808 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.04172,058,062 - 172,166,158 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.04170,678,240 - 170,786,470 (-)NCBIRnor_WKY
Rnor_6.04171,069,161 - 171,176,678 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4171,069,191 - 171,176,581 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04235,326,498 - 235,433,862 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44174,125,313 - 174,140,346 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4158,562,739 - 158,670,744 (-)NCBICelera
Cytogenetic Map4q43NCBI
RERG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381215,107,783 - 15,221,417 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1215,107,783 - 15,348,675 (-)EnsemblGRCh38hg38GRCh38
GRCh371215,260,717 - 15,374,351 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361215,151,984 - 15,265,571 (-)NCBINCBI36Build 36hg18NCBI36
Build 341215,151,984 - 15,265,571NCBI
Celera1220,405,694 - 20,519,355 (-)NCBICelera
Cytogenetic Map12p12.3NCBI
HuRef1215,030,035 - 15,143,674 (-)NCBIHuRef
CHM1_11215,226,796 - 15,340,491 (-)NCBICHM1_1
T2T-CHM13v2.01214,985,067 - 15,098,688 (-)NCBIT2T-CHM13v2.0
Rerg
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396137,031,822 - 137,147,494 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6137,031,823 - 137,147,495 (-)EnsemblGRCm39 Ensembl
GRCm386137,054,825 - 137,170,496 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6137,054,825 - 137,170,497 (-)EnsemblGRCm38mm10GRCm38
MGSCv376137,003,346 - 137,119,017 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366137,019,021 - 137,134,697 (-)NCBIMGSCv36mm8
Celera6140,116,974 - 140,233,486 (-)NCBICelera
Cytogenetic Map6G1NCBI
Rerg
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541311,825,235 - 11,940,804 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541311,825,235 - 11,940,390 (-)NCBIChiLan1.0ChiLan1.0
RERG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan11220,559,363 - 20,672,258 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01215,116,892 - 15,229,737 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11215,513,205 - 15,626,000 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1215,513,205 - 15,626,563 (-)Ensemblpanpan1.1panPan2
RERG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12731,413,464 - 31,526,838 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2731,417,487 - 31,525,496 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2714,922,249 - 15,035,618 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02731,720,047 - 31,833,407 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2731,720,058 - 31,833,394 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12731,609,972 - 31,723,202 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02731,567,927 - 31,681,388 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02714,654,499 - 14,767,650 (-)NCBIUU_Cfam_GSD_1.0
Rerg
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494592,549,893 - 92,668,571 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365872,277,427 - 2,396,218 (+)EnsemblSpeTri2.0
SpeTri2.0NW_0049365872,277,548 - 2,396,206 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RERG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl557,349,382 - 57,462,804 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1557,349,386 - 57,462,813 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2560,736,648 - 60,851,694 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RERG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11115,008,557 - 15,121,538 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1115,008,524 - 15,121,233 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606920,187,091 - 20,300,246 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rerg
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475222,783,519 - 22,928,070 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475222,780,248 - 22,929,395 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rerg
416 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:52
Count of miRNA genes:49
Interacting mature miRNAs:51
Transcripts:ENSRNOT00000030850
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)483428419177635233Rat
7411558Bw133Body weight QTL 13313.840.001body mass (VT:0001259)body weight gain (CMO:0000420)4125590636170590636Rat
1549827Scl46Serum cholesterol level QTL 463.5blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)4132396220177396220Rat
724558Plsm2Polydactyly-luxate syndrome (PLS) morphotypes QTL 20.0003hindlimb integrity trait (VT:0010563)hind foot phalanges count (CMO:0001949)4132422778177422778Rat
2303623Vencon2Ventilatory control QTL 23.8respiration trait (VT:0001943)minute ventilation (CMO:0000132)4135204660180204660Rat
1578674Bmd12Bone mineral density QTL 123.8femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)4135699135180699135Rat
2293659Bmd35Bone mineral density QTL 354.50.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)4137755016181392681Rat
61362Oia2Oil induced arthritis QTL 20.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4138503169173369699Rat
1298524Oia8Oil induced arthritis QTL 8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4138503169173369699Rat
1331738Bp209Blood pressure QTL 2092.979arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)4138503169179293946Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4144639524182687754Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4144639524182687754Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4145568712182687754Rat
634342Cia24Collagen induced arthritis QTL 244.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4146565735175236377Rat
10053718Scort25Serum corticosterone level QTL 252.150.0097blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)4155561574182687754Rat
1300109Rf13Renal function QTL 133.91renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)4157710145182687754Rat

Markers in Region
BE106903  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24169,989,172 - 169,989,378 (+)MAPPERmRatBN7.2
Rnor_6.04171,076,691 - 171,076,896NCBIRnor6.0
Rnor_5.04235,333,933 - 235,334,138UniSTSRnor5.0
RGSC_v3.44174,132,923 - 174,133,128UniSTSRGSC3.4
Celera4158,570,186 - 158,570,391UniSTS
RH 3.4 Map41023.0UniSTS
Cytogenetic Map4q43-q44UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 10 8 14 20 22 11
Low 2 33 49 41 19 41 8 11 60 15 19 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000030850   ⟹   ENSRNOP00000028930
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4169,982,279 - 170,089,715 (-)Ensembl
Rnor_6.0 Ensembl4171,069,191 - 171,176,581 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000101127   ⟹   ENSRNOP00000080904
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4169,982,279 - 170,084,926 (-)Ensembl
RefSeq Acc Id: XM_006237582   ⟹   XP_006237644
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24169,981,634 - 170,089,777 (-)NCBI
Rnor_6.04171,069,161 - 171,176,678 (-)NCBI
Rnor_5.04235,326,498 - 235,433,862 (-)NCBI
Sequence:
RefSeq Acc Id: XM_578417   ⟹   XP_578417
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24169,981,634 - 170,089,776 (-)NCBI
Rnor_6.04171,069,161 - 171,176,678 (-)NCBI
Rnor_5.04235,326,498 - 235,433,862 (-)NCBI
RGSC_v3.44174,125,313 - 174,140,346 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001385858 (Get FASTA)   NCBI Sequence Viewer  
  XP_006237644 (Get FASTA)   NCBI Sequence Viewer  
  XP_578417 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM01588 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_578417   ⟸   XM_578417
- UniProtKB: F1M2G3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006237644   ⟸   XM_006237582
- UniProtKB: F1M2G3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000028930   ⟸   ENSRNOT00000030850
RefSeq Acc Id: ENSRNOP00000080904   ⟸   ENSRNOT00000101127

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M2G3-F1-model_v2 AlphaFold F1M2G3 1-199 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693471
Promoter ID:EPDNEW_R3995
Type:initiation region
Name:Rerg_1
Description:RAS-like, estrogen-regulated, growth-inhibitor
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04171,176,613 - 171,176,673EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562829 AgrOrtholog
BioCyc Gene G2FUF-42582 BioCyc
Ensembl Genes ENSRNOG00000027592 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000028930 ENTREZGENE
  ENSRNOP00000028930.3 UniProtKB/TrEMBL
  ENSRNOP00000080904 ENTREZGENE
  ENSRNOP00000080904.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000030850 ENTREZGENE
  ENSRNOT00000030850.5 UniProtKB/TrEMBL
  ENSRNOT00000101127 ENTREZGENE
  ENSRNOT00000101127.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/TrEMBL
  Small_GTPase UniProtKB/TrEMBL
KEGG Report rno:502916 UniProtKB/TrEMBL
NCBI Gene 502916 ENTREZGENE
PANTHER RAS-LIKE FAMILY 11 MEMBER A UniProtKB/TrEMBL
  RAS-LIKE FAMILY MEMBER 11 UniProtKB/TrEMBL
Pfam Ras UniProtKB/TrEMBL
PhenoGen Rerg PhenoGen
PRINTS RASTRNSFRMNG UniProtKB/TrEMBL
PROSITE RAB UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
SMART RAB UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
TIGRFAMs Small_GTP UniProtKB/TrEMBL
UniProt A0A8I5ZRS4_RAT UniProtKB/TrEMBL
  F1M2G3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-29 Rerg  RAS-like, estrogen-regulated, growth-inhibitor  RGD1562829_predicted  similar to RAS-like, estrogen-regulated, growth-inhibitor (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1562829_predicted  similar to RAS-like, estrogen-regulated, growth-inhibitor (predicted)  LOC502916  similar to RAS-like, estrogen-regulated, growth-inhibitor  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC502916  similar to RAS-like, estrogen-regulated, growth-inhibitor      Symbol and Name status set to provisional 70820 PROVISIONAL