D4Rat205 Marker Search Result - Rat Genome Database

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Marker: D4Rat205

Symbol: D4Rat205
Previously known as: oxsts10926; R0224-C05; 
RGD ID: 40090
Expected Size: 176 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr84180,131,391 - 180,131,567 (+)Marker Load Pipeline
mRatBN7.24178,400,563 - 178,400,739 (+)MAPPERmRatBN7.2
Rnor_6.04179,704,437 - 179,704,612NCBIRnor6.0
Rnor_5.04243,884,121 - 243,884,296UniSTSRnor5.0
RGSC_v3.44183,081,967 - 183,082,143RGDRGSC3.4
RGSC_v3.44183,081,968 - 183,082,143UniSTSRGSC3.4
RGSC_v3.14183,327,092 - 183,327,267RGD
RH 3.4 Map41074.3RGD
RH 3.4 Map41074.3UniSTS
SHRSP x BN Map498.8099RGD
SHRSP x BN Map498.8099UniSTS
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  


Annotation


#
Reference Title
Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines


 
Forward Primer TTGCATTCCTTTGACAATCAA
Reverse Primer ACCCTTGAGGTTGACCACTG
 
Template 
CATGCAAGCTTGCATGCCTGCAGGTCGACTCTAGAGGATCCCCCTGGCTGTGTTGACACACATT
GTACTCCCAGCATGGAGATGCAGGTTCTCACAAAAATGTGGGTGAATGACCCTTGAGGTTGACC
ACTGGCCTCCACATAGGAAAACATATATGGGCATATACAGTTGAATAGACACGCATGCACATGC
ACACACACACACATACACACACACACACACACACACACACACACACACACACACGCTAAAACAG
CATAACACATTGATTGTCAAAGGAATGCAAGAAACTATTAGAACTGAAGCAGGGGTACCGAGCT
CGAATTCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACA
CAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGCTAACTCACA
TTAATTGCGTTGCGCTCACTGCCCGCTTTCCAGTCGGGAAACCTGTCGTGCCAGCTGCATTAAT
GAATC
Strain, Expected Size(s)

ACI/N 170 AVN/Orl 176 BBDP/Rhw 176
BBDR/Rhw 176 BC/CpbU 170 BDIX/Han 176
BDVII/Cub 170 BN-Lx/Cub 178 BN/SsNHsd 178
BP/Cub 170 BUF/Pit 178 COP/OlaHsd 170
DA/PitN 178 DON/Melb 176 F344/Pit 176
FHH/Eur 170 GH/Omr 178 GK/KyoSwe 176
IS/Kyo 176 LE/Mol 174 LEW/Pit 178
LH/Mav 174 LN/Mav 174 LOU/CHan 178
M520/N 178 MHS/Gib 176 MNR/N 178
MNRA/N 178 MNS/Gib 176 MR/Pit 178
NEDH/K 176 NP9 176 ODU/N 176
OKA/Wsl 176 OM/Ztm 178 P5C 176
PVG/Pit 170 SD/Rij 170 SHR/OlaHsd 176
SHRSP/Riv 176 SR/Jr 174 SS/Jr 176
WAG/RijKyo 178 WF/Pit 176 WIST/Nhg 170
WKY/OlaHsd 176 WN/N 176 WTC/Kyo 176


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1560077Lmntd1lamin tail domain containing 14178354302178588483Rat
GenBank Nucleotide JH614873.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


1 to 10 of 13 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4144639524182687754Rat
2303623Vencon2Ventilatory control QTL 23.8respiration trait (VT:0001943)minute ventilation (CMO:0000132)4135204660180204660Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4144639524182687754Rat
1578674Bmd12Bone mineral density QTL 123.8femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)4135699135180699135Rat
1331738Bp209Blood pressure QTL 2092.979arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)4138503169179293946Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
10053718Scort25Serum corticosterone level QTL 252.150.0097blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)4155561574182687754Rat
2293659Bmd35Bone mineral density QTL 354.50.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)4137755016181392681Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4145568712182687754Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat

1 to 10 of 13 rows