Wbp11 (WW domain binding protein 11)

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Gene: Wbp11 (WW domain binding protein 11) Rattus norvegicus

Analyze

Symbol:

Wbp11

Name:

WW domain binding protein 11

RGD ID:

1307911

Description:

Predicted to enable WW domain binding activity and protein phosphatase regulator activity. Predicted to be involved in mRNA processing and rRNA processing. Predicted to act upstream of or within RNA splicing and regulation of catalytic activity. Predicted to be located in cytosol and nuclear speck. Orthologous to human WBP11 (WW domain binding protein 11); PARTICIPATES IN spliceosome pathway; INTERACTS WITH 2,6-dinitrotoluene; 4,4'-sulfonyldiphenol; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC297695; MGC94547; splicing factor that interacts with PQBP-1 and PP1; wbp-11; WW domain-binding protein 11

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	WBP11 (WW domain binding protein 11)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Wbp11 (WW domain binding protein 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Wbp11 (WW domain binding protein 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	WBP11 (WW domain binding protein 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	WBP11 (WW domain binding protein 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Wbp11 (WW domain binding protein 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	WBP11 (WW domain binding protein 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	WBP11 (WW domain binding protein 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Wbp11 (WW domain binding protein 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	WBP11 (WW domain binding protein 11)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Wbp11 (WW domain binding protein 11)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	wbp11 (WW domain binding protein 11)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG2685	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	F33H1.3	Alliance	DIOPT (OrthoFinder\|PANTHER\|PhylomeDB)

Related Pseudogenes:

Wbp11-ps1 Wbp11-ps3

Candidate Gene For:

Kidm48

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	4	169,680,984 - 169,694,431 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	169,680,983 - 169,694,443 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	175,975,711 - 175,989,125 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	4	171,757,453 - 171,770,900 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	4	170,381,374 - 170,394,788 (-)	NCBI	Rnor_WKY
Rnor_6.0	4	170,772,166 - 170,785,613 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	170,154,227 - 170,186,942 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	4	170,772,163 - 170,810,080 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	234,414,445 - 234,427,903 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	173,823,936 - 173,837,308 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	174,069,061 - 174,082,432 (-)	NCBI
Celera	4	158,264,513 - 158,277,960 (-)	NCBI		Celera
Cytogenetic Map	4	q43	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal dominant intellectual developmental disorder 6 (ISO)

developmental and epileptic encephalopathy 27 (ISO)

genetic disease (ISO)

VERTEBRAL, CARDIAC, TRACHEOESOPHAGEAL, RENAL, AND LIMB DEFECTS (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,6-dinitrotoluene (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (EXP,ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

CGP 52608 (ISO)

cisplatin (ISO)

copper(II) sulfate (ISO)

coumarin (ISO)

dexamethasone (ISO)

dicrotophos (ISO)

endosulfan (EXP)

ethanol (ISO)

gentamycin (EXP)

indometacin (ISO)

ivermectin (ISO)

methapyrilene (ISO)

progesterone (ISO)

resveratrol (ISO)

tert-butyl hydroperoxide (ISO)

thapsigargin (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

triptonide (ISO)

tungsten (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mRNA processing (IEA)

RNA processing (IEA)

RNA splicing (ISO)

rRNA processing (IEA)

Cellular Component

cytoplasm (ISO)

cytosol (ISO)

intracellular membrane-bounded organelle (ISO)

nuclear speck (ISO)

nucleolus (ISO)

nucleoplasm (ISO)

nucleus (ISO)

Molecular Function

protein binding (ISO)

protein phosphatase regulator activity (ISO)

WW domain binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

spliceosome pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
5.	GOA pipeline	RGD automated data pipeline
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:14640981	PMID:15489334	PMID:19592703	PMID:22681889	PMID:24912190

Genomics

Comparative Map Data

Wbp11
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	4	169,680,984 - 169,694,431 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	169,680,983 - 169,694,443 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	175,975,711 - 175,989,125 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	4	171,757,453 - 171,770,900 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	4	170,381,374 - 170,394,788 (-)	NCBI	Rnor_WKY
Rnor_6.0	4	170,772,166 - 170,785,613 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	170,154,227 - 170,186,942 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	4	170,772,163 - 170,810,080 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	234,414,445 - 234,427,903 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	173,823,936 - 173,837,308 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	174,069,061 - 174,082,432 (-)	NCBI
Celera	4	158,264,513 - 158,277,960 (-)	NCBI		Celera
Cytogenetic Map	4	q43	NCBI

WBP11
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	14,784,582 - 14,803,478 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	12	14,784,582 - 14,803,486 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	14,937,516 - 14,956,412 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	14,830,679 - 14,847,668 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	14,830,680 - 14,847,668	NCBI
Celera	12	20,084,400 - 20,101,388 (-)	NCBI		Celera
Cytogenetic Map	12	p12.3	NCBI
HuRef	12	14,708,868 - 14,725,858 (-)	NCBI		HuRef
CHM1_1	12	14,905,505 - 14,922,494 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	14,661,939 - 14,680,843 (-)	NCBI		T2T-CHM13v2.0

Wbp11
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	136,790,652 - 136,805,214 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	136,790,652 - 136,805,231 (-)	Ensembl		GRCm39 Ensembl
GRCm38	6	136,813,654 - 136,828,216 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	136,813,654 - 136,828,233 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	136,762,175 - 136,776,737 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	136,777,852 - 136,792,324 (-)	NCBI		MGSCv36	mm8
Celera	6	139,822,906 - 139,837,714 (-)	NCBI		Celera
Cytogenetic Map	6	G1	NCBI
cM Map	6	66.72	NCBI

Wbp11
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955413	11,533,303 - 11,549,067 (-)	NCBI	ChiLan1.0	ChiLan1.0

WBP11
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	12	15,189,323 - 15,206,377 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	15,189,323 - 15,206,377 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	12	14,791,495 - 14,809,460 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

WBP11
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	31,805,590 - 31,822,602 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	31,805,590 - 31,821,147 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	14,626,424 - 14,643,484 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	32,114,165 - 32,129,069 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	27	32,001,615 - 32,018,608 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	31,960,078 - 31,977,326 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	14,358,481 - 14,375,518 (-)	NCBI		UU_Cfam_GSD_1.0

Wbp11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	92,945,542 - 92,959,156 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936587	2,673,206 - 2,687,298 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

WBP11
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	5	57,749,948 - 57,766,788 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	61,196,695 - 61,205,103 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

WBP11
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	14,686,047 - 14,704,172 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	14,686,636 - 14,704,127 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666069	20,606,064 - 20,624,173 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Wbp11
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624752	23,220,021 - 23,235,739 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Wbp11
8 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	41
Count of miRNA genes:	35
Interacting mature miRNAs:	37
Transcripts:	ENSRNOT00000007402
Prediction methods:	Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	11320076	180699135	Rat
1576316	Ept5	Estrogen-induced pituitary tumorigenesis QTL 5	3.8		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	4	83428419	177635233	Rat
6478778	Anxrr51	Anxiety related response QTL 51		0.25384	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	4	124778595	169778595	Rat
7411558	Bw133	Body weight QTL 133	13.84	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	125590636	170590636	Rat
1549827	Scl46	Serum cholesterol level QTL 46	3.5		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	4	132396220	177396220	Rat
724558	Plsm2	Polydactyly-luxate syndrome (PLS) morphotypes QTL 2		0.0003	hindlimb integrity trait (VT:0010563)	hind foot phalanges count (CMO:0001949)	4	132422778	177422778	Rat
2303623	Vencon2	Ventilatory control QTL 2	3.8		respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	4	135204660	180204660	Rat
1578674	Bmd12	Bone mineral density QTL 12	3.8		femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	4	135699135	180699135	Rat
2293659	Bmd35	Bone mineral density QTL 35	4.5	0.0001	femur strength trait (VT:0010010)	femoral neck ultimate force (CMO:0001703)	4	137755016	181392681	Rat
61362	Oia2	Oil induced arthritis QTL 2		0.001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	138503169	173369699	Rat
1298524	Oia8	Oil induced arthritis QTL 8			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	138503169	173369699	Rat
1331738	Bp209	Blood pressure QTL 209	2.979		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	138503169	179293946	Rat
6478718	Anxrr34	Anxiety related response QTL 34		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	144639524	182687754	Rat
6478748	Anxrr42	Anxiety related response QTL 42		0.28008	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	144639524	182687754	Rat
6478754	Anxrr43	Anxiety related response QTL 43		0.14035	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	144639524	182687754	Rat
6478693	Anxrr32	Anxiety related response QTL 32		0.00092	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	4	144639524	182687754	Rat
6478700	Anxrr33	Anxiety related response QTL 33		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	144639524	182687754	Rat
10401796	Kidm48	Kidney mass QTL 48			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	4	145568712	182687754	Rat
634342	Cia24	Collagen induced arthritis QTL 24	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	146565735	175236377	Rat
10053718	Scort25	Serum corticosterone level QTL 25	2.15	0.0097	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	155561574	182687754	Rat
1300109	Rf13	Renal function QTL 13	3.91		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	4	157710145	182687754	Rat

Markers in Region

RH129142

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	169,681,031 - 169,681,220 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	170,772,214 - 170,772,402	NCBI	Rnor6.0
Rnor_6.0	4	170,154,309 - 170,154,497	NCBI	Rnor6.0
Rnor_5.0	4	234,414,495 - 234,414,683	UniSTS	Rnor5.0
Rnor_5.0	4	235,030,486 - 235,030,674	UniSTS	Rnor5.0
RGSC_v3.4	4	173,823,984 - 173,824,172	UniSTS	RGSC3.4
Celera	4	158,264,561 - 158,264,749	UniSTS
Cytogenetic Map	4	q43	UniSTS

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001009661	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001303017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC097939	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC087082	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473964	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000151	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000007402 ⟹ ENSRNOP00000007402

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	169,680,984 - 169,694,443 (-)	Ensembl
Rnor_6.0 Ensembl	4	170,154,263 - 170,167,633 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000072528 ⟹ ENSRNOP00000065287

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	169,680,984 - 169,694,443 (-)	Ensembl
Rnor_6.0 Ensembl	4	170,772,647 - 170,783,725 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000082235 ⟹ ENSRNOP00000069027

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	169,680,984 - 169,692,255 (-)	Ensembl
Rnor_6.0 Ensembl	4	170,154,227 - 170,186,942 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000082312 ⟹ ENSRNOP00000070403

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	169,680,983 - 169,691,058 (-)	Ensembl
Rnor_6.0 Ensembl	4	170,772,163 - 170,810,080 (-)	Ensembl

RefSeq Acc Id:

NM_001009661 ⟹ NP_001009661

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	169,680,984 - 169,694,431 (-)	NCBI
Rnor_6.0	4	170,772,166 - 170,785,613 (-)	NCBI
Rnor_5.0	4	234,414,445 - 234,427,903 (-)	NCBI
RGSC_v3.4	4	173,823,936 - 173,837,308 (-)	RGD
Celera	4	158,264,513 - 158,277,960 (-)	NCBI

Sequence:

show sequence

CGAGGTTTCAAGATGGCGGTGCCTGTGTGGTTGACCGAGACCCAGAGGTGAAGGCCCCTTCGGA
GAAAGTACTCGGGAACCCCTCGCTAGTCGCTCTCGCCGTCCCGGGAGACTCTCAGTCGTTTTTT
TTTTTTTTAATGAAGAAGTAAACCATATAAACTGTCAACATGGGACGAAGATCAACATCCTCCA
CCAAGAGTGGGAAGTTTATGAACCCCACAGACCAAGCCCGAAAAGAAGCCCGGAAAAGAGAGTT
GAAAAAGAACAAAAAACAGCGCATGATGGTCCGAGCTGCAGTTTTGAAGATGAAAGACCCCAAG
CAGATTATCCGGGACATGGAGAAATTGGATGAAATGGAGTTTAACCCAGTGCAACAGCCGCAGT
TGAATGAAAAAGTACTGAAAGACAAGCGTAAAAAGCTGCGAGAAACCTTTGAACGAATTCTGCG
GCTCTATGAGAAAGAAAACCCAGACATCTACAAAGAGCTGAGGAAGCTGGAAGTGGAGTACGAG
CAGAAGAGGGCGCAGCTGAGCCAGTACTTTGATGCCGTCAAGAACGCCCAGCATGTGGAAGTAG
AGAGCATCCCTCTGCCAGATATGCCGCATGCCCCTTCCAACATCCTGATCCAGGACATTCCTCT
TCCTGGTGCCCAGCCACCCTCTATCCTGAAGAAAACCTCGGCATATGGGCCTCCAACTCGAGCA
GTTTCTATCCTTCCTCTCCTGGGACACGGTGTTCCACGTTTGCCCCCTGGCAGAAAACCGCCTG
GCCCTCCACCTGGCCCACCTCCTCCTCAAGTTCTGCAGATGTATGGCCGTAAAGTGGGCTTTGC
TCTCGATCTTCCCCCTCGGAGGCGAGATGAAGACATGCTGTACAGTCCGGAACTTGCTCAGCGG
GGCCATGATGATGACATGTCCAGCACCAGTGAGGACGACGGCTATCCTGAGGACATGGATCAGG
ATAAGCACGATGACAGTACTGAGGACAGTGACACTGACAGATCCGATGCAGAAAGTGATGGGGA
TGAGTTCGGCCACCGTGACGACAGTGAGCGTGACAACACTGAGGAGAAGAAGTCAGGTCTGAGC
GTCCGGTTTGCAGATATGCCTGGGAAATCTAGGAAGAAGAAGAAGAACATGAAGGAGCTGACTC
CTCTTCAAGCCATGATGCTGCGAATGGCAGGTCAGGAAATCCCTGAGGAAGGACGGGAAGTGGA
GGAGTTTTCAGAGGAGGAGGACGACGACGACTCTGAGGACTCTGAGGCAGAGAAGCCATCGCAG
AAGCAGCATAAAGAGGATTCCCACGCTGACGGCTCCTCGGCCGCCTCTTCACAGCAGCAGGCCC
CTCCACAGGCCGTTCCTCCTTCTCAGATACAAGCACCTCCCATGCCAGGACCGCCACCTCTCGG
ACCACCGCCTGCCCCACCCTTACGGCCTCCTGGACCACCTACAGGCCTTCCTCCTGGGCCACCT
CCAGGGGCTCCTCCATTCCTGAGACCACCTGGGATGCCAGGAATCCGAGGGCCTTTACCACGGC
TTTTACCTCCAGGACCACCACCAGGCCGACCTCCTGGCCCTCCGCCAGGCCCACCTCCAGGTCT
CCCCCCTGGGCCCCCTCCTCGAGGACCCCCACCAAGGCTACCTCCTCCTGCACCTCCAGGTATC
CCTCCTCCTCGTCCTGGCATGATGCGCCCTCCGTTGGTGCCTCCTCTTGGACCTGCCCCGCCTG
GCCTTTTCCCGCCAGCTCCCTTACCCAACCCAGGGGTGTTGAGTGCCCCACCCAGCCTCATTCA
GCGACCGAAGGCGGATGATGCAAGTGCAGCCACCATCGAGAAGAAGGCCACAGCGACCATCAGT
GCCAAGCCCCAGATCACCAATCCCAAGGCAGAGGTCACACGGTTTGTGCCCACTGCACTGAGGG
TGCGCCGCGAGAATAAGGGGGCTACTGCCGTTCCCCAAAGAAGGTCAGAGGAGGACTCTGCTGT
GCCTGTGGCCAAAGCAGCCCCCAGATCTGGGCCTTCAGTTCCTGTGTCGGTACAGACTAAGGAC
GATGTCTATGAAGCGTTTATGAAAGAGATGGAAGGGCTGCTGTGACAGATTGTCCTGCCAGTGC
AGGCTTCTCCTCAGAGGACTGGTTTGTGGAACAAGAGGCTCTCGTTAAACTTAGAGAGAAGAGC
GAAGTGCACTGTCAGGTGTAATAGACCAGGCTGTGAAGCACTGCTGCTAGCCCCATTCCCTGAC
ACCACCGTCTCCTCCCCTCTTCCCCTCTCCATTTTGGGAATTCTATCAGCGAGGTCTTAGTTAC
TTGTTTTGACTCATGTGCCATGAGCACTAGGGTAGAGAATTCTGGAGGAAGAAAGTTTATTTCA
TCTTGACTTTTGTGTTTGTGTTATTTTTAATATTTTCCTGTAAATATTTTGTAATATTTTCCTT
GTAGTGAAATGGATCACAATATCATTTCCTAATTCAAAGCAGGATATGTGGGAAGAAAATACAC
AATTCTGGGGTTAATGTTATTTCCCACAAACTAAACTCTTTTGAGTGTTTCTTGGAGAAATAAA
ATGTTCCATACCAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001303017 ⟹ NP_001289946

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	169,680,984 - 169,694,431 (-)	NCBI
Rnor_6.0	4	170,772,166 - 170,785,613 (-)	NCBI
Celera	4	158,264,513 - 158,277,960 (-)	NCBI

Sequence:

show sequence

CGAGGTTTCAAGATGGCGGTGCCTGTGTGGTTGACCGAGACCCAGAGGTGAAGGCCCCTTCGGA
GAAAGTACTCGGGAACCCCTCGCTAGTCGCTCTCGCCGTCCCGGGAGACTCTCAGTCGTTTTTT
TTTTTTAATGAAGAAGTAAACCATATAAACTGTCAACATGGGACGAAGATCAACATCCTCCACC
AAGAGTGGGAAGTTTATGAACCCCACAGACCAAGCCCGAAAAGAAGCCCGGAAAAGAGAGTTGA
AAAAGAACAAAAAACAGCGCATGATGGTCCGAGCTGCAGTTTTGAAGATGAAAGACCCCAAGCA
GATTATCCGGGACATGGAGAAATTGGATGAAATGGAGTTTAACCCAGTGCAACAGCCGCAGTTG
AATGAAAAAGTACTGAAAGACAAGCGTAAAAAGCTGCGAGAAACCTTTGAACGAATTCTGCGGC
TCTATGAGAAAGAAAACCCAGACATCTACAAAGAGCTGAGGAAGCTGGAAGTGGAGTACGAGCA
GAAGAGGGCGCAGCTGAGCCAGTACTTTGATGCCGTCAAGAACGCCCAGCATGTGGAAGTAGAG
AGCATCCCTCTGCCAGATATGCCGCATGCCCCTTCCAACATCCTGATCCAGGACATTCCTCTTC
CTGGTGCCCAGCCACCCTCTATCCTGAAGAAAACCTCGGCATATGGGCCTCCAACTCGAGCAGT
TTCTATCCTTCCTCTCCTGGGACACGGTGTTCCACGTTTGCCCCCTGGCAGAAAACCGCCTGGC
CCTCCACCTGGCCCACCTCCTCCTCAAGTTCTGCAGATGTATGGCCGTAAAGTGGGCTTTGCTC
TCGATCTTCCCCCTCGGAGGCGAGATGAAGACATGCTGTACAGTCCGGAACTTGCTCAGCGGGG
CCATGATGATGACATGTCCAGCACCAGTGAGGACGACGGCTATCCTGAGGACATGGATCAGGAT
AAGCACGATGACAGTACTGAGGACAGTGACACTGACAGATCCGATGCAGAAAGTGATGGGGATG
AGTTCGGCCACCGTGACGACAGTGAGCGTGACAACACTGAGGAGAAGAAGTCAGGTCTGAGCGT
CCGGTTTGCAGATATGCCTGGGAAATCTAGGAAGAAGAAGAAGAACATGAAGGAGCTGACTCCT
CTTCAAGCCATGATGCTGCGAATGGCAGGTCAGGAAATCCCTGAGGAAGGACGGGAAGTGGAGG
AGTTTTCAGAGGAGGAGGACGACGACGACTCTGAGGACTCTGAGGCAGAGAAGCCATCGCAGAA
GCAGCATAAAGAGGATTCCCACGCTGACGGCTCCTCGGCCGCCTCTTCACAGCAGCAGGCCCCT
CCACAGGCCGTTCCTCCTTCTCAGATACAAGCACCTCCCATGCCAGGACCGCCACCTCTCGGAC
CACCGCCTGCCCCACCCTTACGGCCTCCTGGACCACCTACAGGCCTTCCTCCTGGGCCACCTCC
AGGGGCTCCTCCATTCCTGAGACCACCTGGGATGCCAGGAATCCGAGGGCCTTTACCACGGCTT
TTACCTCCAGGACCACCACCAGGCCGACCTCCTGGCCCTCCGCCAGGCCCACCTCCAGGTCTCC
CCCCTGGGCCCCCTCCTCGAGGACCCCCACCAAGGCTACCTCCTCCTGCACCTCCAGGTATCCC
TCCTCCTCGTCCTGGCATGATGCGCCCTCCGTTGGTGCCTCCTCTTGGACCTGCCCCGCCTGGC
CTTTTCCCGCCAGCTCCCTTACCCAACCCAGGGGTGTTGAGTGCCCCACCCAGCCTCATTCAGC
GACCGAAGGCGGATGATGCAAGTGCAGCCACCATCGAGAAGAAGGCCACAGCGACCATCAGTGC
CAAGCCCCAGATCACCAATCCCAAGGCAGAGGTCACACGGTTTGTGCCCACTGCACTGAGGGTG
CGCCGCGAGAATAAGGGGGCTACTGCCGTTCCCCAAAGAAGGTCAGAGGAGGACTCTGCTGTGC
CTGTGGCCAAAGCAGCCCCCAGATCTGGGCCTTCAGTTCCTGTGTCGGTACAGACTAAGGACGA
TGTCTATGAAGCGTTTATGAAAGAGATGGAAGGGCTGCTGTGACAGATTGTCCTGCCAGTGCAG
GCTTCTCCTCAGAGGACTGGTTTGTGGAACAAGAGGCTCTCGTTAAACTTAGAGAGAAGAGCGA
AGTGCACTGTCAGGTGTAATAGACCAGGCTGTGAAGCACTGCTGCTAGCCCCATTCCCTGACAC
CACCGTCTCCTCCCCTCTTCCCCTCTCCATTTTGGGAATTCTATCAGCGAGGTCTTAGTTACTT
GTTTTGACTCATGTGCCATGAGCACTAGGGTAGAGAATTCTGGAGGAAGAAAGTTTATTTCATC
TTGACTTTTGTGTTTGTGTTATTTTTAATATTTTCCTGTAAATATTTTGTAATATTTTCCTTGT
AGTGAAATGGATCACAATATCATTTCCTAATTCAAAGCAGGATATGTGGGAAGAAAATACACAA
TTCTGGGGTTAATGTTATTTCCCACAAACTAAACTCTTTTGAGTGTTTCTTGGAGAAATAAAAT
GTTCCATACCAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001009661	(Get FASTA)	NCBI Sequence Viewer
	NP_001289946	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH87082	(Get FASTA)	NCBI Sequence Viewer
	EDM01604	(Get FASTA)	NCBI Sequence Viewer
	Q5PQQ2	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001009661 ⟸ NM_001009661

- UniProtKB:

Q5PQQ2 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MGRRSTSSTKSGKFMNPTDQARKEARKRELKKNKKQRMMVRAAVLKMKDPKQIIRDMEKLDEME
FNPVQQPQLNEKVLKDKRKKLRETFERILRLYEKENPDIYKELRKLEVEYEQKRAQLSQYFDAV
KNAQHVEVESIPLPDMPHAPSNILIQDIPLPGAQPPSILKKTSAYGPPTRAVSILPLLGHGVPR
LPPGRKPPGPPPGPPPPQVLQMYGRKVGFALDLPPRRRDEDMLYSPELAQRGHDDDMSSTSEDD
GYPEDMDQDKHDDSTEDSDTDRSDAESDGDEFGHRDDSERDNTEEKKSGLSVRFADMPGKSRKK
KKNMKELTPLQAMMLRMAGQEIPEEGREVEEFSEEEDDDDSEDSEAEKPSQKQHKEDSHADGSS
AASSQQQAPPQAVPPSQIQAPPMPGPPPLGPPPAPPLRPPGPPTGLPPGPPPGAPPFLRPPGMP
GIRGPLPRLLPPGPPPGRPPGPPPGPPPGLPPGPPPRGPPPRLPPPAPPGIPPPRPGMMRPPLV
PPLGPAPPGLFPPAPLPNPGVLSAPPSLIQRPKADDASAATIEKKATATISAKPQITNPKAEVT
RFVPTALRVRRENKGATAVPQRRSEEDSAVPVAKAAPRSGPSVPVSVQTKDDVYEAFMKEMEGL
L

hide sequence

RefSeq Acc Id:

NP_001289946 ⟸ NM_001303017

- UniProtKB:

Q5PQQ2 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MGRRSTSSTKSGKFMNPTDQARKEARKRELKKNKKQRMMVRAAVLKMKDPKQIIRDMEKLDEME
FNPVQQPQLNEKVLKDKRKKLRETFERILRLYEKENPDIYKELRKLEVEYEQKRAQLSQYFDAV
KNAQHVEVESIPLPDMPHAPSNILIQDIPLPGAQPPSILKKTSAYGPPTRAVSILPLLGHGVPR
LPPGRKPPGPPPGPPPPQVLQMYGRKVGFALDLPPRRRDEDMLYSPELAQRGHDDDMSSTSEDD
GYPEDMDQDKHDDSTEDSDTDRSDAESDGDEFGHRDDSERDNTEEKKSGLSVRFADMPGKSRKK
KKNMKELTPLQAMMLRMAGQEIPEEGREVEEFSEEEDDDDSEDSEAEKPSQKQHKEDSHADGSS
AASSQQQAPPQAVPPSQIQAPPMPGPPPLGPPPAPPLRPPGPPTGLPPGPPPGAPPFLRPPGMP
GIRGPLPRLLPPGPPPGRPPGPPPGPPPGLPPGPPPRGPPPRLPPPAPPGIPPPRPGMMRPPLV
PPLGPAPPGLFPPAPLPNPGVLSAPPSLIQRPKADDASAATIEKKATATISAKPQITNPKAEVT
RFVPTALRVRRENKGATAVPQRRSEEDSAVPVAKAAPRSGPSVPVSVQTKDDVYEAFMKEMEGL
L

hide sequence

RefSeq Acc Id:

ENSRNOP00000065287 ⟸ ENSRNOT00000072528

RefSeq Acc Id:

ENSRNOP00000069027 ⟸ ENSRNOT00000082235

RefSeq Acc Id:

ENSRNOP00000070403 ⟸ ENSRNOT00000082312

RefSeq Acc Id:

ENSRNOP00000007402 ⟸ ENSRNOT00000007402

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5PQQ2-F1-model_v2	AlphaFold	Q5PQQ2	1-641	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693466

Promoter ID:

EPDNEW_R3991

Type:

single initiation site

Name:

Wbp11_1

Description:

WW domain binding protein 11

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	170,783,755 - 170,783,815	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307911	AgrOrtholog
BioCyc Gene	G2FUF-42597	BioCyc
Ensembl Genes	ENSRNOG00000005505	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSRNOG00000049593	Ensembl
Ensembl Protein	ENSRNOP00000007402	ENTREZGENE
	ENSRNOP00000007402.5	UniProtKB/Swiss-Prot
	ENSRNOP00000065287.2	UniProtKB/TrEMBL
	ENSRNOP00000069027.1	UniProtKB/TrEMBL
	ENSRNOP00000070403.2	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000007402	ENTREZGENE
	ENSRNOT00000007402.6	UniProtKB/Swiss-Prot
	ENSRNOT00000072528.2	UniProtKB/TrEMBL
	ENSRNOT00000082235.2	UniProtKB/TrEMBL
	ENSRNOT00000082312.2	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7189215	IMAGE-MGC_LOAD
InterPro	WW_dom-bd_prot_11	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:297695	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94547	IMAGE-MGC_LOAD
NCBI Gene	297695	ENTREZGENE
PANTHER	PTHR13361	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	WW DOMAIN-BINDING PROTEIN 11	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Wbp11	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Wbp11	PhenoGen
UniProt	A0A0G2JUA6_RAT	UniProtKB/TrEMBL
	A0A0G2JXU2_RAT	UniProtKB/TrEMBL
	A0A8L2QW34_RAT	UniProtKB/TrEMBL
	Q5PQQ2	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-12-06	Wbp11	WW domain binding protein 11	Wbp11_predicted	WW domain binding protein 11 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Wbp11_predicted	WW domain binding protein 11 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)