Clec7a (C-type lectin domain containing 7A)

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Gene: Clec7a (C-type lectin domain containing 7A) Rattus norvegicus

Analyze

Symbol:

Clec7a

Name:

C-type lectin domain containing 7A

RGD ID:

1565140

Description:

Predicted to enable several functions, including (1->3)-beta-D-glucan binding activity; (1->3)-beta-D-glucan immune receptor activity; and identical protein binding activity. Predicted to be involved in several processes, including positive regulation of cytokine production; positive regulation of intracellular signal transduction; and response to fungus. Predicted to act upstream of or within several processes, including phagocytosis; positive regulation of tumor necrosis factor production; and response to fungus. Predicted to be located in cytoplasm and external side of plasma membrane. Human ortholog(s) of this gene implicated in aspergillosis and chronic mucocutaneous candidiasis. Orthologous to human CLEC7A (C-type lectin domain containing 7A); PARTICIPATES IN phagocytosis pathway; tuberculosis pathway; INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

C-type lectin domain family 7 member A; C-type lectin domain family 7, member A; Clec7b; dectin-1; LOC502902; RGD1565140; similar to Clecsf12 protein

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	4	162,902,731 - 162,913,931 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	162,902,732 - 162,913,897 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	169,137,545 - 169,148,615 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	164,920,504 - 164,931,574 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	163,554,549 - 163,565,619 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	163,216,152 - 163,227,367 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	163,216,163 - 163,227,334 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	211,859,714 - 211,870,889 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	166,723,515 - 166,734,681 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	4	151,587,575 - 151,598,651 (-)	NCBI		Celera
Cytogenetic Map	4	q42	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

aspergillosis (ISO)

Candidiasis, Familial, 4 (ISO)

Fungal Keratitis (ISO)

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,1-dichloroethene (ISO)

17beta-estradiol (EXP)

17beta-estradiol 3-benzoate (EXP)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,3',5,5'-tetrabromobisphenol A (EXP)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (ISO)

acetamide (EXP)

acrylamide (ISO)

aflatoxin B1 (EXP)

all-trans-retinoic acid (ISO)

amphetamine (EXP)

antirheumatic drug (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

Benzo[k]fluoranthene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP)

bortezomib (ISO)

butyric acid (ISO)

cadmium atom (ISO)

cadmium dichloride (EXP)

carbon nanotube (ISO)

chitosan (ISO)

chloroprene (ISO)

choline (ISO)

chromium(6+) (ISO)

cisplatin (ISO)

diarsenic trioxide (ISO)

diiodine (ISO)

dimethylarsinic acid (ISO)

dioxygen (EXP)

disulfiram (ISO)

epoxiconazole (ISO)

ethanol (ISO)

fenamidone (ISO)

fenthion (ISO)

folic acid (ISO)

formaldehyde (EXP,ISO)

furan (ISO)

GW 4064 (ISO)

indometacin (EXP)

L-methionine (ISO)

leukotriene C4 (ISO)

lidocaine (EXP)

lipopolysaccharide (ISO)

metam (ISO)

methylarsonic acid (ISO)

nickel atom (ISO)

ozone (ISO)

paracetamol (ISO)

paraquat (ISO)

PCB138 (ISO)

peptidoglycan (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phthalaldehyde (ISO)

protein kinase inhibitor (ISO)

resveratrol (ISO)

silicon dioxide (EXP)

sodium arsenate (ISO)

sodium arsenite (ISO)

sodium dichromate (ISO)

succimer (ISO)

tacrolimus hydrate (ISO)

testosterone (EXP)

tetrachloroethene (ISO)

tetrachloromethane (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

tremolite asbestos (ISO)

Tributyltin oxide (ISO)

trimellitic anhydride (ISO)

trovafloxacin (ISO)

vinclozolin (EXP)

ziram (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

antifungal innate immune response (ISO)

cell activation (ISO)

cell recognition (ISO)

cell surface pattern recognition receptor signaling pathway (ISO)

cell-cell adhesion (ISO)

cellular response to molecule of fungal origin (IBA,ISO)

detection of fungus (IBA)

detection of molecule of fungal origin (IBA,ISO)

detection of yeast (ISO)

innate immune response (ISO)

leukocyte activation involved in immune response (ISO)

phagocytosis, engulfment (ISO)

phagocytosis, recognition (IBA,ISO)

positive regulation of calcium-mediated signaling (ISO)

positive regulation of canonical NF-kappaB signal transduction (ISO)

positive regulation of cell maturation (ISO)

positive regulation of cell migration (IBA,ISO)

positive regulation of cell population proliferation (IBA,ISO)

positive regulation of cytokine production involved in immune response (ISO)

positive regulation of cytokine production involved in inflammatory response (IBA,ISO)

positive regulation of dendritic cell cytokine production (ISO)

positive regulation of gene expression (ISO)

positive regulation of interleukin-1 beta production (ISO)

positive regulation of interleukin-10 production (ISO)

positive regulation of interleukin-12 production (ISO)

positive regulation of interleukin-2 production (ISO)

positive regulation of interleukin-23 production (ISO)

positive regulation of interleukin-6 production (ISO)

positive regulation of interleukin-8 production (ISO)

positive regulation of killing of cells of another organism (IBA,ISO)

positive regulation of lymphocyte activation (IBA,ISO)

positive regulation of monocyte chemotactic protein-1 production (ISO)

positive regulation of nitric oxide biosynthetic process (ISO)

positive regulation of peptidyl-tyrosine phosphorylation (ISO)

positive regulation of phagocytosis (IBA,ISO)

positive regulation of protein-containing complex assembly (ISO)

positive regulation of respiratory burst (ISO)

positive regulation of stress-activated MAPK cascade (ISO)

positive regulation of superoxide anion generation (ISO)

positive regulation of T-helper 17 type immune response (ISO)

positive regulation of tumor necrosis factor production (ISO)

positive regulation of type II interferon production (ISO)

positive regulation of wound healing (IBA,ISO)

regulation of calcineurin-NFAT signaling cascade (ISO)

regulation of canonical NF-kappaB signal transduction (ISO)

response to molecule of fungal origin (ISO)

response to yeast (ISO)

stimulatory C-type lectin receptor signaling pathway (ISO)

Cellular Component

cell surface (IBA,ISO)

cytoplasm (ISO)

external side of plasma membrane (ISO)

Molecular Function

(1->3)-beta-D-glucan binding (IBA,ISO)

(1->3)-beta-D-glucan immune receptor activity (ISO)

carbohydrate binding (ISO)

identical protein binding (ISO)

opsonin binding (ISO)

pattern recognition receptor activity (IBA,ISO)

polysaccharide binding (ISO)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

phagocytosis pathway (IEA)

tuberculosis pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
3.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
4.	GOA pipeline	RGD automated data pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
7.	Inhibition of TREM-1 and Dectin-1 Alleviates the Severity of Fungal Keratitis by Modulating Innate Immune Responses.	Zhong J, etal., PLoS One. 2016 Mar 10;11(3):e0150114. doi: 10.1371/journal.pone.0150114. eCollection 2016.

Additional References at PubMed

PMID:11567029	PMID:12477932	PMID:18667041	PMID:19358895	PMID:20544345	PMID:21691936	PMID:22267217	PMID:23285072	PMID:24721111	PMID:25246527	PMID:25251945	PMID:32790017

Genomics

Comparative Map Data

Clec7a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	4	162,902,731 - 162,913,931 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	162,902,732 - 162,913,897 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	169,137,545 - 169,148,615 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	164,920,504 - 164,931,574 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	163,554,549 - 163,565,619 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	163,216,152 - 163,227,367 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	163,216,163 - 163,227,334 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	211,859,714 - 211,870,889 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	166,723,515 - 166,734,681 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	4	151,587,575 - 151,598,651 (-)	NCBI		Celera
Cytogenetic Map	4	q42	NCBI

CLEC7A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	10,116,777 - 10,130,304 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	10,116,777 - 10,130,258 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	10,269,376 - 10,282,798 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	10,160,643 - 10,174,135 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	10,171,190 - 10,174,103	NCBI
Celera	12	15,430,059 - 15,443,548 (-)	NCBI		Celera
Cytogenetic Map	12	p13.2	NCBI
HuRef	12	10,012,523 - 10,026,010 (-)	NCBI		HuRef
CHM1_1	12	10,238,652 - 10,252,134 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	10,003,452 - 10,016,972 (-)	NCBI		T2T-CHM13v2.0

Clec7a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	129,438,554 - 129,449,748 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	129,438,554 - 129,449,742 (-)	Ensembl		GRCm39 Ensembl
GRCm38	6	129,461,591 - 129,472,785 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	129,461,591 - 129,472,779 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	129,411,609 - 129,422,795 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	129,427,284 - 129,438,465 (-)	NCBI		MGSCv36	mm8
Celera	6	131,183,577 - 131,194,776 (-)	NCBI		Celera
Cytogenetic Map	6	F3	NCBI
cM Map	6	63.34	NCBI

CLEC7A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	12	15,599,522 - 15,614,341 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	10,161,780 - 10,174,943 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	10,410,384 - 10,425,452 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	10,410,384 - 10,425,452 (-)	Ensembl	panpan1.1		panPan2

CLEC7A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	35,852,685 - 35,885,673 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	35,853,099 - 36,007,157 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	10,738,120 - 10,766,549 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	36,203,142 - 36,231,601 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	36,209,883 - 36,264,356 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	36,091,248 - 36,119,494 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	36,120,431 - 36,141,974 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	10,260,084 - 10,288,263 (-)	NCBI		UU_Cfam_GSD_1.0

Clec7a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	97,304,630 - 97,315,165 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936902	436,224 - 446,435 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CLEC7A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	61,832,954 - 61,846,434 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	61,832,910 - 61,846,441 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	64,542,875 - 64,556,425 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CLEC7A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	9,989,520 - 10,007,442 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	9,995,203 - 10,006,746 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666089	2,066,063 - 2,084,594 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Clec7a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624752	26,871,292 - 26,891,910 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624752	26,871,556 - 26,885,778 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Clec7a
13 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	533
Count of miRNA genes:	249
Interacting mature miRNAs:	295
Transcripts:	ENSRNOT00000052373, ENSRNOT00000059885
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	11320076	180699135	Rat
1576316	Ept5	Estrogen-induced pituitary tumorigenesis QTL 5	3.8		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	4	83428419	177635233	Rat
1358202	Gluco11	Glucose level QTL 11	2.4	0.02	adipocyte glucose uptake trait (VT:0004185)	absolute change in adipocyte glucose uptake (CMO:0000873)	4	85379421	167139601	Rat
634335	Anxrr16	Anxiety related response QTL 16	7.22		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	4	93308457	167139447	Rat
737821	Hcar9	Hepatocarcinoma resistance QTL 9	3.7		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	4	109866907	167139601	Rat
1331759	Hrtrt13	Heart rate QTL 13	3.54628		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	4	110275411	168266883	Rat
724535	Cm18	Cardiac mass QTL 18	2.6		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	4	118856416	163856416	Rat
634347	Hcar8	Hepatocarcinoma resistance QTL 8	5.8		liver integrity trait (VT:0010547)	liver tumorous lesion area to total liver area ratio (CMO:0001075)	4	123143783	168143783	Rat
631683	Bp116	Blood pressure QTL 116		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	124303370	169303370	Rat
6478778	Anxrr51	Anxiety related response QTL 51		0.25384	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	4	124778595	169778595	Rat
7411558	Bw133	Body weight QTL 133	13.84	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	125590636	170590636	Rat
61451	Ciaa4	CIA Autoantibody QTL 4	3.1		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	4	126395976	167139601	Rat
737978	Pia23	Pristane induced arthritis QTL 23	5.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	131730738	167139601	Rat
631511	Pia7	Pristane induced arthritis QTL 7	4.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	131730738	167139601	Rat
1549827	Scl46	Serum cholesterol level QTL 46	3.5		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	4	132396220	177396220	Rat
724558	Plsm2	Polydactyly-luxate syndrome (PLS) morphotypes QTL 2		0.0003	hindlimb integrity trait (VT:0010563)	hind foot phalanges count (CMO:0001949)	4	132422778	177422778	Rat
61422	Cia13	Collagen induced arthritis QTL 13	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	132642577	167139601	Rat
2303623	Vencon2	Ventilatory control QTL 2	3.8		respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	4	135204660	180204660	Rat
1578674	Bmd12	Bone mineral density QTL 12	3.8		femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	4	135699135	180699135	Rat
2293659	Bmd35	Bone mineral density QTL 35	4.5	0.0001	femur strength trait (VT:0010010)	femoral neck ultimate force (CMO:0001703)	4	137755016	181392681	Rat
61362	Oia2	Oil induced arthritis QTL 2		0.001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	138503169	173369699	Rat
1298524	Oia8	Oil induced arthritis QTL 8			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	138503169	173369699	Rat
1331738	Bp209	Blood pressure QTL 209	2.979		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	138503169	179293946	Rat
6478718	Anxrr34	Anxiety related response QTL 34		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	144639524	182687754	Rat
6478748	Anxrr42	Anxiety related response QTL 42		0.28008	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	144639524	182687754	Rat
6478754	Anxrr43	Anxiety related response QTL 43		0.14035	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	144639524	182687754	Rat
6478693	Anxrr32	Anxiety related response QTL 32		0.00092	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	4	144639524	182687754	Rat
6478700	Anxrr33	Anxiety related response QTL 33		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	144639524	182687754	Rat
10401796	Kidm48	Kidney mass QTL 48			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	4	145568712	182687754	Rat
634342	Cia24	Collagen induced arthritis QTL 24	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	146565735	175236377	Rat
12798525	Anxrr57	Anxiety related response QTL 57	3.21	0.05	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	147278504	167139601	Rat
1582237	Kidm34	Kidney mass QTL 34	4	0.0001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	4	148090542	168069246	Rat
10053718	Scort25	Serum corticosterone level QTL 25	2.15	0.0097	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	155561574	182687754	Rat
1300109	Rf13	Renal function QTL 13	3.91		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	4	157710145	182687754	Rat

Markers in Region

RH130710

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	162,902,903 - 162,903,084 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	163,216,335 - 163,216,515	NCBI	Rnor6.0
Rnor_5.0	4	211,859,887 - 211,860,067	UniSTS	Rnor5.0
RGSC_v3.4	4	166,723,688 - 166,723,868	UniSTS	RGSC3.4
Celera	4	151,587,748 - 151,587,928	UniSTS
RH 3.4 Map	4	1013.4	UniSTS
Cytogenetic Map	4	q42	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium			7	2	14	2				1	5	11
Low	3	18	42	31	5	31	5	5	7	22	11		5
Below cutoff		15	8	8		8	3	6	35	10	19		3

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001173386	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237100	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039108259	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039108260	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001837491	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB455106	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AB455107	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC166774	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473964	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GU357485	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000150	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000077793 ⟹ ENSRNOP00000069723

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	162,904,376 - 162,913,897 (-)	Ensembl
Rnor_6.0 Ensembl	4	163,217,813 - 163,227,334 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000091552 ⟹ ENSRNOP00000073639

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	162,902,732 - 162,913,805 (-)	Ensembl
Rnor_6.0 Ensembl	4	163,216,163 - 163,227,242 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000108367 ⟹ ENSRNOP00000087024

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	162,902,732 - 162,913,805 (-)	Ensembl

RefSeq Acc Id:

NM_001173386 ⟹ NP_001166857

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	162,902,731 - 162,913,805 (-)	NCBI
Rnor_6.0	4	163,216,162 - 163,227,242 (-)	NCBI
Rnor_5.0	4	211,859,714 - 211,870,889 (-)	NCBI
Celera	4	151,587,575 - 151,598,651 (-)	NCBI

Sequence:

show sequence

GAACATTCAAGTGCTCTGCCTACGTAGAGTCCTGTGAAGCAGTGGAATATCATTCTCAAATAGA
GAACATGGACGAAGATGGATATACTCAATTAGACTTCGGCACTCGAAACATCCACAAAAGACCT
GTAAAATCAGAGAAAGGAAGCCCAGCTCCATCTTCTCGTTGGCGGTCCATTGCGGTAGCTTTAG
GAATCCTGTGCTTGCTCACAGTAGTGGTCGCAGCAGTGCTGGGTGCCCTAGCATTTCGGAGATT
CAATTCAGGGAGATATCCAGAGGAGAAAGACAACTTCCCATCAAGAAATAAGGAGAACCACAAA
CCCACAGAACCATCTTTAGATGAGAAGGTGGCTCCCTCCAAGGCATCCCAAACTACAGGCGTCT
TTTCTGGACCTTGCCTTCCCAATTGGATCATGCATGCCAAGAGCTGTTATCTATTTAGCTTCTC
AGAAAATTCCTGGTATGGAAGTAGGAGACACTGTTCCCAGCTAGGAGCTCATCTATTGAAGATA
GACAATGCAAAAGAATTTGAGTTCATTGAAAGCCAAACATCTTCTCACCGTGTTAACTCATTCT
GGATAGGTCTATCTCGCAATCAGAGTGAAGGGCCGTGGTTCTGGGAGGATGGATCAGCATTTAC
CCCCAACTCGTTTCAAGTCAGAAATACAGCTCCCCAAGAAAGCTTACCCCACAATTGTGTTTGG
ATCCATGGGTCAGAGGTCTACAACCAAATGTGCATTGCTTCCTCATTCACTATCTGTGAGAAGG
AACTGTAAAATGTAATGTATGTGAGAGTGTAAAGGTGGAATGCATGTGTGTGTGCATGCACACA
CACACCCACACACATCACCACCACCATAACCACCAACACAACCAATAACAACAACAACAATAAA
ACAACACAACAACAACAGCAACAACAAAACAGAACAGAACAGAACAGGAAAGATGAATATTGAA
AATCAGAGAAAACGCTGAAATGCTAAGAGACTTTAACCTCAGCTGAGAACTTGGATGCAGAAGC
TAAGACTTCTGCACTTGCCAGCTTCATAAAGAAGGCAGCGCTATCTTCCAGTTAGTAAGCCACT
AGATGTGAAATGAAGGCAGCTCAGAAATAGGGAATATGTGAACATGAGGTATCCTAACCCAAAT
GCCACAACCACAACAAAACCCCTACACCATCAGGAAATACTGTAGAAGGGGGCTGAAGACTCTA
AGCGTCAGAGGACCAGCATGCCTACTGCTAGTGTCTTCTAGACAGGACTCACTTCCAAGAAGTG
AGTACCCAGGTAATAACAATACAATTTAGCAAACAAGATGTGCATAATAACAACCTCAGTTGGT
ATGCCAATACAGATGTAGAAATTTCACAGGGTCCTACTCCCCACATGAAGGACTACAGGCCATT
AATGATTCTCAAAGAGAGGGACAAGCCTCCTGATGGGTTACTGAACCCCGAGCAGTCAGCACTG
AACACACGTACAGAACAGTATCATTGAACCAGTAAGACATATGCATATGTGTTAATCAAAAGGT
ATTACTGGAGCACACACTGTGTTAGCGTGATTTGCTCAGTGTCTAGCAGTACATCAGACACAGG
GAGAAGGCATGATGCACTTCTAAATTGAGACGTGAAGGGATGAGGGAGGAAAATCTTCATTATA
ACCAGAGCTTTTATTTTCATCCACATGATCACTATTAAGATGATCATCATTCAGACGTAGTGAC
CCAAGCTTCTTCCCCAACTAGATAACCCAGAGAGTCTGCCTGCCTTTTCTGATAGCAAAATCTG
CTACGACAAGGTGCTTCCCTCACAGGAAGCACTCTCCTTAAATGTTAGAGTTGGAAAGAGAAAT
GATATCGGATAGTGGATATTTAAAAGGCACCCAGTCAGGATTCGTGTTTTTGAGCACAGAATGT
ATTTCATCTTTTTAGGACATACTATTTTGCAGTTAACAATCAATTCTTTAGTCGTTTCCTTACA
AACGTGCGACTGGAATGTGCCTCTGTTTCCTAGTGTGACCTGCCTTGCTGCCTTCTAAGATTGT
CCATTAATGCCACCCATATTTCCTGTGTGAATTTCCATATTGCTGGGGATCTATTTGTAGCTTC
CTCAGACTGATCAATGTGTGGGTAGAAATTGTTCTGGGTCCACTGAATTATTCACTTGAAAGTG
ATTGGTTTTATGTCACTTTCATCTTAACTGAAAAAAAAAACTGCTTATTAAAGGATCTTTGGCC
TCTGGATAACTTGCCTATATGTAGCAATCACTAACATAATTCTTGCCTTCTCCCTAAAAAGTTG
ATGAATTTGATACTAGGAAATGTGTATACTAGATAGTTTTTCACTGAAGCATAAACTTGCGTTC
TTAAAGATTTTATAATGTCTCCAAGAAAAAAATAAACATTTTTGTGAGGTTTGCTCTCAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006237100 ⟹ XP_006237162

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	162,902,731 - 162,913,924 (-)	NCBI
Rnor_6.0	4	163,216,152 - 163,227,365 (-)	NCBI
Rnor_5.0	4	211,859,714 - 211,870,889 (-)	NCBI

Sequence:

show sequence

TTTTCATTTCCTGCTTTGGGCACTGGCTAGACTACGTAGGCTGAGCTCCATGAACCTCAGGGAA
GGGGCTCTTTCAGGGTTTGGTTTAGAGATCCTCATCCTGGTAGTTATTTTGCTGGGAAAGAACA
TTCAAGTGCTCTGCCTACGTAGAGTCCTGTGAAGCAGTGGAATATCATTCTCAAATAGAGAACA
TGGACGAAGATGGATATACTCAATTAGACTTCGGCACTCGAAACATCCACAAAAGACCTGTAAA
ATCAGAGAAAGGAAGCCCAGCTCCATCTTCTCGTTGGCGGTCCATTGCGGTAGCTTTAGGAATC
CTGTGCTTGCTCACAGTAGTGGTCGCAGCAGTGCTGGGTGCCCTAGGCGTCTTTTCTGGACCTT
GCCTTCCCAATTGGATCATGCATGCCAAGAGCTGTTATCTATTTAGCTTCTCAGAAAATTCCTG
GTATGGAAGTAGGAGACACTGTTCCCAGCTAGGAGCTCATCTATTGAAGATAGACAATGCAAAA
GAATTTGAGTTCATTGAAAGCCAAACATCTTCTCACCGTGTTAACTCATTCTGGATAGGTCTAT
CTCGCAATCAGAGTGAAGGGCCGTGGTTCTGGGAGGATGGATCAGCATTTACCCCCAACTCGTT
TCAAGTCAGAAATACAGCTCCCCAAGAAAGCTTACCCCACAATTGTGTTTGGATCCATGGGTCA
GAGGTCTACAACCAAATGTGCATTGCTTCCTCATTCACTATCTGTGAGAAGGAACTGTAAAATG
TAATGTATGTGAGAGTGTAAAGGTGGAATGCGTGTGTGTGTGCATGCACACACACACCCACACA
CATCACCACCACCATAACCACCAACACAACCAATAACAACAACAACAATAAAACAACACAACAA
CAACAGCAACAACAAAACAGAACAGAACAGAACAGGAAAGATGAATATTGAAAATCAGAGAAAA
CGCTGAAATGCTAAGAGACTTTAACCTCAGCTGAGAACTTGGATGCAGAAGCTAAGACTTCTGC
ACTTGCCAGCTTCATAAAGAAGGCAGCGCTATCTTCCAGTTAGTAAGCCACTAGATGTGAAATG
AAGGCAGCTCAGAAATAGGGAATATGTGAACATGAGGTATCCTAACCCAAATGCCACAACCACA
ACAAAACCCCTACACCATCAGGAAATACTGTAGAAGGGGGCTGAAGACTCTAAGCGTCAGAGGA
CCAGCATGCCTACTGCTAGTGTCTTCTAGACAGGACTCACTTCCAAGAAGTGAGTACCCAGGTA
ATAACAATACAATTTAGCAAACAAGATGTGCATAATAACAACCTCAGTTGGTATGCCAATACAG
ATGTAGAAATTTCACAGGGTCCTACTCCCCACATGAAGGACTACAGGCCATTAATGATTCTCAA
AGAGAGGGACAAGCCTCCTGATGGGTTACTGAACCCCGAGCAGTCAGCACTGAACACACGTACA
GAACAGTATCATTGAACCAGTAAGACATATGCATATGTGTTAATCAAAAGGTATTACTGGAGCA
CACACTGTGTTAGCGTGATTTGCTCAGTGTCTAGCAGTACATCAGACACAGGGAGAAGGCATGA
TGCACTTCTAAATTGAGACGTGAAGGGATGAGGGAGGAAAATCTTCATTATAACCAGAGCTTTT
ATTTTCATCCACATGATCACTATTAAGATGATCATCATTCAGACGTAGTGACCCAAGCTTCTTC
CCCAACTAGATAACCCAGAGAGTCTGCCTGCCTTTTCTGATAGCAAAATCTGCTACGACAAGGT
GCTTCCCTCACAGGAAGCACTCTCCTTAAATGTTAGAGTTGGAAAGAGAAATGATATCGGATAG
TGGATATTTAAAAGGCACCCAGTCAGGATTCGTGTTTTTGAGCACAGAATGTATTTCATCTTTT
TAGGACATACTATTTTGCAGTTAACAATCAATTCTTTAGTCGTTTCCTTACAAACGTGCGACTG
GAATGTGCCTCTGTTTCCTAGTGTGACCTGCCTTGCTGCCTTCTAAGATTGTCCATTAATGCCA
CCCATATTTCCTGTGTGAATTTCCATATTGCTGGGGATCTATTTGTAGCTTCCTCAGACTGATC
AATGTGTGGGTAGAAATTGTTCTGGGTCCACTGAATTATTCACTTGAAAGTGATTGGTTTTATG
TCACTTTCATCTTAACTGAAAAAAAAAACTGCTTATTAAAGGATCTTTGGCCTCTGGATAACTT
GCCTATATGTAGCAATCACTAACATAATTCTTGCCTTCTCCCTAAAAAGTTGATGAATTTGATA
CTAGGAAATGTGTATACTAGATAGTTTTTCACTGAAGCATAAACTTGCGTTCTTAAAGATTTTA
TAATGTCTCCAAGAAAAAAATAAACATTTTTGTGAGGTTTGCTCTCATCTTTTAACA

hide sequence

RefSeq Acc Id:

XM_039108259 ⟹ XP_038964187

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	162,905,942 - 162,913,930 (-)	NCBI

RefSeq Acc Id:

XM_039108260 ⟹ XP_038964188

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	162,907,264 - 162,913,931 (-)	NCBI

RefSeq Acc Id:

XR_001837491

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	162,904,367 - 162,913,929 (-)	NCBI
Rnor_6.0	4	163,217,851 - 163,227,367 (-)	NCBI

Sequence:

show sequence

GCTTTTCATTTCCTGCTTTGGGCACTGGCTAGACTACGTAGGCTGAGCTCCATGAACCTCAGGG
AAGGGGCTCTTTCAGGGTTTGGTTTAGAGATCCTCATCCTGGTAGTTATTTTGCTGGGAAAGAA
CATTCAAGTGCTCTGCCTACGTAGAGTCCTGTGAAGCAGTGGAATATCATTCTCAAATAGAGAA
CATGGACGAAGATGGATATACTCAATTAGACTTCGGCACTCGAAACATCCACAAAAGACCTGTA
AAATCAGAGAAAGGAAGCCCAGCTCCATCTTCTCGTTGGCGGTCCATTGCGGTAGCTTTAGGAA
TCCTGTGCTTGCTCACAGTAGTGGTCGCAGCAGTGCTGGGTGCCCTAGCATTTCGGAGATTCAA
TTCAGGGAGATATCCAGAGGAGAAAGACAACTTCCCATCAAGAAATAAGGAGAACCACAAACCC
ACAGAACCATCTTTAGATGAGAAGGTGGCTCCCTCCAAGGCATCCCAAACTACAGGCGTCTTTT
CTGGACCTTGCCTTCCCAATTGGATCATGCATGCCAAGAGCTGTTATCTATTTAGCTTCTCAGA
AAATTCCTGGTATGGAAGTAGGAGACACTGTTCCCAGCTAGGAGCTCATCTATTGAAGATAGAC
AATGCAAAAGAATTTGAGTTCATTGAAAGCCAAACATCTTCTCACCGTGTTAACTCATTCTGGA
TAGGTCTATCTCGCAATCAGAGTGAAGGGCCGTGGTTCTGGGAGGATGGATCAGCATTTACCCC
CAACTCGGTGGTGGTAACTTAATTTCTGTCTCCAAACCACTTGAATGTCAGGGAAAATTTTTGG
AAATTACTGGTGAAAATTCTCCCTGAGGTCTGGGTCAAGGCAGTTTATCCTGCCCCTGTCATTT
CAAGAGCAGATTTTCTCAATCTACCAACCACTGGGTCAAGGAGAGGCAACCATTCAAGGTTTCA
AGTCAGAAATACAGCTCCCCAAGAAAGCTTACCCCACAATTGTGTTTGGATCCATGGGTCAGAG
GTCTACAACCAAATGTGCA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001166857	(Get FASTA)	NCBI Sequence Viewer
	XP_006237162	(Get FASTA)	NCBI Sequence Viewer
	XP_038964187	(Get FASTA)	NCBI Sequence Viewer
	XP_038964188	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI66774	(Get FASTA)	NCBI Sequence Viewer
	ADK94895	(Get FASTA)	NCBI Sequence Viewer
	BAG69160	(Get FASTA)	NCBI Sequence Viewer
	BAG69161	(Get FASTA)	NCBI Sequence Viewer
	EDM01739	(Get FASTA)	NCBI Sequence Viewer
	EDM01740	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000069723.2
	ENSRNOP00000073639
	ENSRNOP00000073639.1
	ENSRNOP00000087024
	ENSRNOP00000087024.1

RefSeq Acc Id:

NP_001166857 ⟸ NM_001173386

- UniProtKB:

B5BUZ1 (UniProtKB/TrEMBL), E9PTB9 (UniProtKB/TrEMBL), A0A0G2JW33 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDEDGYTQLDFGTRNIHKRPVKSEKGSPAPSSRWRSIAVALGILCLLTVVVAAVLGALAFRRFN
SGRYPEEKDNFPSRNKENHKPTEPSLDEKVAPSKASQTTGVFSGPCLPNWIMHAKSCYLFSFSE
NSWYGSRRHCSQLGAHLLKIDNAKEFEFIESQTSSHRVNSFWIGLSRNQSEGPWFWEDGSAFTP
NSFQVRNTAPQESLPHNCVWIHGSEVYNQMCIASSFTICEKEL

hide sequence

RefSeq Acc Id:	XP_006237162 ⟸ XM_006237100
- Peptide Label:	isoform X2
- UniProtKB:	B5BUZ2 (UniProtKB/TrEMBL), E9PTT6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDEDGYTQLDFGTRNIHKRPVKSEKGSPAPSSRWRSIAVALGILCLLTVVVAAVLGALGVFSGP CLPNWIMHAKSCYLFSFSENSWYGSRRHCSQLGAHLLKIDNAKEFEFIESQTSSHRVNSFWIGL SRNQSEGPWFWEDGSAFTPNSFQVRNTAPQESLPHNCVWIHGSEVYNQMCIASSFTICEKEL hide sequence

RefSeq Acc Id:

ENSRNOP00000069723 ⟸ ENSRNOT00000077793

RefSeq Acc Id:

ENSRNOP00000073639 ⟸ ENSRNOT00000091552

RefSeq Acc Id:	XP_038964187 ⟸ XM_039108259
- Peptide Label:	isoform X1
- UniProtKB:	A6IM50 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038964188 ⟸ XM_039108260
- Peptide Label:	isoform X3

RefSeq Acc Id:

ENSRNOP00000087024 ⟸ ENSRNOT00000108367

Protein Domains

C-type lectin

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B5BUZ1-F1-model_v2	AlphaFold	B5BUZ1	1-235	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693435

Promoter ID:

EPDNEW_R3960

Type:

single initiation site

Name:

Clec7a_1

Description:

C-type lectin domain containing 7A

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	163,227,268 - 163,227,328	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1565140	AgrOrtholog
BioCyc Gene	G2FUF-42780	BioCyc
Ensembl Genes	ENSRNOG00000054251	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000077793.2	UniProtKB/TrEMBL
	ENSRNOT00000091552	ENTREZGENE
	ENSRNOT00000091552.2	UniProtKB/TrEMBL
	ENSRNOT00000108367	ENTREZGENE
	ENSRNOT00000108367.1	UniProtKB/TrEMBL
Gene3D-CATH	3.10.100.10	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7934181	IMAGE-MGC_LOAD
InterPro	C-type_lectin	UniProtKB/TrEMBL
	C-type_lectin-like	UniProtKB/TrEMBL
	C-type_lectin_fold	UniProtKB/TrEMBL
	CLEC7A	UniProtKB/TrEMBL
	NKR-like_CTLD	UniProtKB/TrEMBL
KEGG Report	rno:502902	UniProtKB/TrEMBL
MGC_CLONE	MGC:188550	IMAGE-MGC_LOAD
NCBI Gene	502902	ENTREZGENE
PANTHER	C-TYPE LECTIN DOMAIN FAMILY 7 MEMBER A	UniProtKB/TrEMBL
	PTHR47218	UniProtKB/TrEMBL
Pfam	Lectin_C	UniProtKB/TrEMBL
PhenoGen	Clec7a	PhenoGen
PROSITE	C_TYPE_LECTIN_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000054251	RatGTEx
SMART	CLECT	UniProtKB/TrEMBL
Superfamily-SCOP	C-type_lectin_fold	UniProtKB/TrEMBL
UniProt	A0A0G2JW33	ENTREZGENE, UniProtKB/TrEMBL
	A6IM50	ENTREZGENE, UniProtKB/TrEMBL
	B2RYG9_RAT	UniProtKB/TrEMBL
	B5BUZ1	ENTREZGENE, UniProtKB/TrEMBL
	B5BUZ2	ENTREZGENE, UniProtKB/TrEMBL
	E9PTB9	ENTREZGENE
	E9PTT6	ENTREZGENE
UniProt Secondary	E9PTB9	UniProtKB/TrEMBL
	E9PTT6	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-03-29	Clec7a	C-type lectin domain containing 7A	Clec7a	C-type lectin domain family 7, member A	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2011-06-08	Clec7a	C-type lectin domain family 7, member A	Clec7a	C-type lectin domain family 7, member a	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-06	Clec7a	C-type lectin domain family 7, member a	RGD1565140_predicted	similar to Clecsf12 protein (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1565140_predicted	similar to Clecsf12 protein (predicted)	LOC502902	similar to Clecsf12 protein	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC502902	similar to Clecsf12 protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)