Gprc5d (G protein-coupled receptor, class C, group 5, member D) - Rat Genome Database

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Gene: Gprc5d (G protein-coupled receptor, class C, group 5, member D) Rattus norvegicus
Analyze
Symbol: Gprc5d
Name: G protein-coupled receptor, class C, group 5, member D
RGD ID: 1563887
Description: Predicted to enable protein kinase activator activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to be part of receptor complex. Predicted to be active in extracellular exosome; intracellular membrane-bounded organelle; and plasma membrane. Orthologous to human GPRC5D (G protein-coupled receptor class C group 5 member D); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; amphetamine; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: G protein-coupled receptor, family C, group 5, member D; G-protein coupled receptor family C group 5 member D; LOC500349; RGD1563887; similar to G protein-coupled receptor family C group 5 member D
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24167,943,523 - 167,955,616 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4167,943,523 - 167,955,616 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4174,238,761 - 174,250,851 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04170,019,983 - 170,032,080 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04168,644,122 - 168,656,210 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04168,872,897 - 168,884,925 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4168,872,897 - 168,884,886 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04233,143,883 - 233,155,649 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44172,027,523 - 172,039,757 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4156,539,852 - 156,551,914 (-)NCBICelera
Cytogenetic Map4q43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11311935  


Genomics

Comparative Map Data
Gprc5d
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24167,943,523 - 167,955,616 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4167,943,523 - 167,955,616 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4174,238,761 - 174,250,851 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04170,019,983 - 170,032,080 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04168,644,122 - 168,656,210 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04168,872,897 - 168,884,925 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4168,872,897 - 168,884,886 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04233,143,883 - 233,155,649 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44172,027,523 - 172,039,757 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4156,539,852 - 156,551,914 (-)NCBICelera
Cytogenetic Map4q43NCBI
GPRC5D
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381212,940,575 - 12,952,170 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1212,940,575 - 12,952,170 (-)EnsemblGRCh38hg38GRCh38
GRCh371213,093,509 - 13,105,104 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361212,984,976 - 12,994,585 (-)NCBINCBI36Build 36hg18NCBI36
Build 341212,984,975 - 12,994,585NCBI
Celera1218,242,561 - 18,252,157 (-)NCBICelera
Cytogenetic Map12p13.1NCBI
HuRef1212,863,299 - 12,872,851 (-)NCBIHuRef
CHM1_11213,059,039 - 13,068,587 (-)NCBICHM1_1
T2T-CHM13v2.01212,814,207 - 12,827,419 (-)NCBIT2T-CHM13v2.0
Gprc5d
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396135,082,989 - 135,095,281 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6135,082,989 - 135,095,281 (-)EnsemblGRCm39 Ensembl
GRCm386135,105,991 - 135,118,283 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6135,105,991 - 135,118,283 (-)EnsemblGRCm38mm10GRCm38
MGSCv376135,056,009 - 135,068,301 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366135,071,684 - 135,083,976 (-)NCBIMGSCv36mm8
Celera6138,061,630 - 138,073,612 (-)NCBICelera
Cytogenetic Map6G1NCBI
cM Map665.89NCBI
Gprc5d
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554139,805,839 - 9,815,616 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554139,805,848 - 9,815,616 (-)NCBIChiLan1.0ChiLan1.0
GPRC5D
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan11218,392,571 - 18,405,437 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01212,960,297 - 12,961,437 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11213,332,090 - 13,341,531 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1213,332,090 - 13,341,470 (-)Ensemblpanpan1.1panPan2
GPRC5D
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12733,415,856 - 33,424,772 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2733,286,571 - 33,426,458 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2713,019,891 - 13,028,135 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02733,722,472 - 33,730,740 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12733,616,739 - 33,625,006 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02733,567,110 - 33,575,385 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02712,754,918 - 12,763,281 (-)NCBIUU_Cfam_GSD_1.0
Gprc5d
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494594,667,809 - 94,677,787 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365874,395,405 - 4,405,424 (+)EnsemblSpeTri2.0
SpeTri2.0NW_0049365874,396,912 - 4,405,416 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GPRC5D
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl559,527,895 - 59,545,857 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1559,534,913 - 59,545,417 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2562,862,675 - 62,864,597 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GPRC5D
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11112,846,623 - 12,869,310 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1112,846,036 - 12,857,124 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606922,459,979 - 22,472,879 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gprc5d
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475225,030,667 - 25,039,397 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475225,029,315 - 25,039,231 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gprc5d
35 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:32
Count of miRNA genes:29
Interacting mature miRNAs:31
Transcripts:ENSRNOT00000011141
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)483428419177635233Rat
1331759Hrtrt13Heart rate QTL 133.54628heart pumping trait (VT:2000009)heart rate (CMO:0000002)4110275411168266883Rat
634347Hcar8Hepatocarcinoma resistance QTL 85.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)4123143783168143783Rat
631683Bp116Blood pressure QTL 1160.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4124303370169303370Rat
6478778Anxrr51Anxiety related response QTL 510.25384locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4124778595169778595Rat
7411558Bw133Body weight QTL 13313.840.001body mass (VT:0001259)body weight gain (CMO:0000420)4125590636170590636Rat
1549827Scl46Serum cholesterol level QTL 463.5blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)4132396220177396220Rat
724558Plsm2Polydactyly-luxate syndrome (PLS) morphotypes QTL 20.0003hindlimb integrity trait (VT:0010563)hind foot phalanges count (CMO:0001949)4132422778177422778Rat
2303623Vencon2Ventilatory control QTL 23.8respiration trait (VT:0001943)minute ventilation (CMO:0000132)4135204660180204660Rat
1578674Bmd12Bone mineral density QTL 123.8femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)4135699135180699135Rat
2293659Bmd35Bone mineral density QTL 354.50.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)4137755016181392681Rat
61362Oia2Oil induced arthritis QTL 20.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4138503169173369699Rat
1298524Oia8Oil induced arthritis QTL 8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4138503169173369699Rat
1331738Bp209Blood pressure QTL 2092.979arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)4138503169179293946Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4144639524182687754Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4144639524182687754Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4145568712182687754Rat
634342Cia24Collagen induced arthritis QTL 244.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4146565735175236377Rat
1582237Kidm34Kidney mass QTL 3440.0001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)4148090542168069246Rat
10053718Scort25Serum corticosterone level QTL 252.150.0097blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)4155561574182687754Rat
1300109Rf13Renal function QTL 133.91renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)4157710145182687754Rat

Markers in Region
D4Got142  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24167,943,066 - 167,943,303 (+)MAPPERmRatBN7.2
Rnor_6.04168,872,441 - 168,872,677NCBIRnor6.0
Rnor_5.04233,143,427 - 233,143,663UniSTSRnor5.0
RGSC_v3.44172,027,066 - 172,027,303RGDRGSC3.4
RGSC_v3.44172,027,067 - 172,027,303UniSTSRGSC3.4
RGSC_v3.14172,272,003 - 172,272,239RGD
Celera4156,539,396 - 156,539,632UniSTS
RH 3.4 Map41023.5RGD
RH 3.4 Map41023.5UniSTS
Cytogenetic Map4q43UniSTS
BM392090  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24167,943,569 - 167,943,769 (+)MAPPERmRatBN7.2
Rnor_6.04168,872,944 - 168,873,143NCBIRnor6.0
Rnor_5.04233,143,930 - 233,144,129UniSTSRnor5.0
RGSC_v3.44172,027,570 - 172,027,769UniSTSRGSC3.4
Celera4156,539,899 - 156,540,098UniSTS
RH 3.4 Map41025.2UniSTS
Cytogenetic Map4q43UniSTS
Gprc5d  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24167,953,595 - 167,953,647 (+)MAPPERmRatBN7.2
Rnor_6.04168,882,866 - 168,882,917NCBIRnor6.0
Rnor_5.04233,153,629 - 233,153,680UniSTSRnor5.0
Celera4156,549,894 - 156,549,945UniSTS
Cytogenetic Map4q43UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system appendage
High
Medium
Low 7 3 1 1 2 1
Below cutoff 1 17 14 8 14 8 3 5 15 12 6 3

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000011141   ⟹   ENSRNOP00000011141
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4167,943,523 - 167,955,616 (-)Ensembl
Rnor_6.0 Ensembl4168,872,897 - 168,884,886 (-)Ensembl
RefSeq Acc Id: NM_001109254   ⟹   NP_001102724
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24167,943,523 - 167,955,616 (-)NCBI
Rnor_6.04168,872,897 - 168,884,886 (-)NCBI
Rnor_5.04233,143,883 - 233,155,649 (-)NCBI
RGSC_v3.44172,027,523 - 172,039,757 (-)RGD
Celera4156,539,852 - 156,551,914 (-)RGD
Sequence:
RefSeq Acc Id: XM_039108223   ⟹   XP_038964151
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24167,943,524 - 167,954,575 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001102724 (Get FASTA)   NCBI Sequence Viewer  
  XP_038964151 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM01634 (Get FASTA)   NCBI Sequence Viewer  
  EDM01635 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000011141
  ENSRNOP00000011141.4
Reference Protein Sequences
RefSeq Acc Id: NP_001102724   ⟸   NM_001109254
- UniProtKB: D4A7N4 (UniProtKB/TrEMBL),   A6IMF4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000011141   ⟸   ENSRNOT00000011141
RefSeq Acc Id: XP_038964151   ⟸   XM_039108223
- Peptide Label: isoform X1
- UniProtKB: A6IMF5 (UniProtKB/TrEMBL)
Protein Domains
G-protein coupled receptors family 3 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A7N4-F1-model_v2 AlphaFold D4A7N4 1-332 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693456
Promoter ID:EPDNEW_R3981
Type:single initiation site
Name:Gprc5d_1
Description:G protein-coupled receptor, class C, group 5, member D
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04168,884,849 - 168,884,909EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1563887 AgrOrtholog
BioCyc Gene G2FUF-42638 BioCyc
Ensembl Genes ENSRNOG00000008439 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000011141 ENTREZGENE
  ENSRNOT00000011141.5 UniProtKB/TrEMBL
InterPro GPCR_3_C UniProtKB/TrEMBL
KEGG Report rno:500349 UniProtKB/TrEMBL
NCBI Gene 500349 ENTREZGENE
PANTHER G PROTEIN COUPLED RECEPTOR, CLASS C, GROUP 5 UniProtKB/TrEMBL
  G-PROTEIN COUPLED RECEPTOR FAMILY C GROUP 5 MEMBER D UniProtKB/TrEMBL
Pfam 7tm_3 UniProtKB/TrEMBL
PhenoGen Gprc5d PhenoGen
RatGTEx ENSRNOG00000008439 RatGTEx
UniProt A6IMF4 ENTREZGENE, UniProtKB/TrEMBL
  A6IMF5 ENTREZGENE, UniProtKB/TrEMBL
  D4A7N4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-02-06 Gprc5d  G protein-coupled receptor, class C, group 5, member D  Gprc5d  G protein-coupled receptor, family C, group 5, member D  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-06 Gprc5d  G protein-coupled receptor, family C, group 5, member D  RGD1563887_predicted  similar to G protein-coupled receptor family C group 5 member D (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1563887_predicted  similar to G protein-coupled receptor family C group 5 member D (predicted)  LOC500349  similar to G protein-coupled receptor family C group 5 member D  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC500349  similar to G protein-coupled receptor family C group 5 member D      Symbol and Name status set to provisional 70820 PROVISIONAL