Phc1 (polyhomeotic homolog 1) - Rat Genome Database

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Gene: Phc1 (polyhomeotic homolog 1) Rattus norvegicus
Analyze
Symbol: Phc1
Name: polyhomeotic homolog 1
RGD ID: 1309203
Description: Predicted to enable chromatin binding activity and histone binding activity. Predicted to be involved in chromatin remodeling and negative regulation of DNA-templated transcription. Predicted to act upstream of or within cellular response to leukemia inhibitory factor and cellular response to retinoic acid. Predicted to be located in nuclear body. Predicted to be part of PRC1 complex and sex chromatin. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in primary autosomal recessive microcephaly 11. Orthologous to human PHC1 (polyhomeotic homolog 1); PARTICIPATES IN histone modification pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC312690; polyhomeotic homolog 1 (Drosophila); polyhomeotic-like 1; polyhomeotic-like 1 (Drosophila); polyhomeotic-like protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24155,510,274 - 155,532,636 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4155,510,274 - 155,533,959 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4161,773,522 - 161,795,581 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04157,556,705 - 157,578,801 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04156,201,613 - 156,223,733 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04155,093,947 - 155,118,838 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4155,093,949 - 155,116,154 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04222,121,134 - 222,143,635 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44158,736,736 - 158,759,429 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14158,982,409 - 159,004,315 (-)NCBI
Celera4144,331,497 - 144,353,650 (-)NCBICelera
Cytogenetic Map4q42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. PRC1 complex diversity: where is it taking us? Gil J and O'Loghlen A, Trends Cell Biol. 2014 Jul 22. pii: S0962-8924(14)00102-0. doi: 10.1016/j.tcb.2014.06.005.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. GOA pipeline RGD automated data pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Comprehensive gene review and curation RGD comprehensive gene curation
10. Occupying chromatin: Polycomb mechanisms for getting to genomic targets, stopping transcriptional traffic, and staying put. Simon JA and Kingston RE, Mol Cell. 2013 Mar 7;49(5):808-24. doi: 10.1016/j.molcel.2013.02.013.
Additional References at PubMed
PMID:8070621   PMID:12167701   PMID:12183370   PMID:14557078   PMID:15525528   PMID:16687444   PMID:19636380   PMID:20439489   PMID:21282530   PMID:23418308  


Genomics

Comparative Map Data
Phc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24155,510,274 - 155,532,636 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4155,510,274 - 155,533,959 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4161,773,522 - 161,795,581 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04157,556,705 - 157,578,801 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04156,201,613 - 156,223,733 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04155,093,947 - 155,118,838 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4155,093,949 - 155,116,154 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04222,121,134 - 222,143,635 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44158,736,736 - 158,759,429 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14158,982,409 - 159,004,315 (-)NCBI
Celera4144,331,497 - 144,353,650 (-)NCBICelera
Cytogenetic Map4q42NCBI
PHC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38128,913,843 - 8,941,467 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl128,913,896 - 8,941,467 (+)EnsemblGRCh38hg38GRCh38
GRCh37129,067,105 - 9,094,063 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36128,958,583 - 8,985,330 (+)NCBINCBI36Build 36hg18NCBI36
Build 34128,958,532 - 8,984,156NCBI
Celera1210,604,723 - 10,631,471 (+)NCBICelera
Cytogenetic Map12p13.31NCBI
HuRef128,847,980 - 8,874,662 (+)NCBIHuRef
CHM1_1129,036,292 - 9,063,026 (+)NCBICHM1_1
T2T-CHM13v2.0128,896,088 - 8,923,703 (+)NCBIT2T-CHM13v2.0
Phc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396122,294,690 - 122,317,551 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6122,294,690 - 122,317,520 (-)EnsemblGRCm39 Ensembl
GRCm386122,317,731 - 122,340,227 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6122,317,731 - 122,340,561 (-)EnsemblGRCm38mm10GRCm38
MGSCv376122,267,749 - 122,287,033 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366122,283,350 - 122,302,616 (-)NCBIMGSCv36mm8
Celera6124,111,949 - 124,131,254 (-)NCBICelera
Cytogenetic Map6F1NCBI
cM Map657.52NCBI
Phc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554136,156,934 - 6,176,460 (-)NCBIChiLan1.0ChiLan1.0
PHC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan11214,437,482 - 14,463,797 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0128,999,018 - 9,025,900 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1129,230,801 - 9,257,811 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl129,231,394 - 9,257,806 (+)Ensemblpanpan1.1panPan2
PHC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12736,797,327 - 36,816,726 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2736,797,927 - 36,819,386 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha279,800,373 - 9,819,772 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02737,145,820 - 37,165,431 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2737,145,621 - 37,167,108 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12737,026,319 - 37,049,023 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02737,061,391 - 37,081,063 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0279,331,615 - 9,351,225 (+)NCBIUU_Cfam_GSD_1.0
Phc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494598,470,772 - 98,495,688 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936870277,252 - 303,125 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936870275,764 - 300,460 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PHC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl562,557,776 - 62,580,651 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1562,557,774 - 62,580,640 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2565,355,682 - 65,378,586 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PHC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1118,733,769 - 8,759,430 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl118,733,988 - 8,758,600 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666089829,972 - 856,201 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Phc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248604,720,722 - 4,747,456 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Phc1
85 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:86
Count of miRNA genes:71
Interacting mature miRNAs:74
Transcripts:ENSRNOT00000020529
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)444463720155883716Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)464528739157573521Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)483428419177635233Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)485379421167139601Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)493308457167139447Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4109866907167139601Rat
1331759Hrtrt13Heart rate QTL 133.54628heart pumping trait (VT:2000009)heart rate (CMO:0000002)4110275411168266883Rat
6478760Anxrr45Anxiety related response QTL 450.06717locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
6478763Anxrr46Anxiety related response QTL 460.07428locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
12798519Anxrr54Anxiety related response QTL 542.540.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4114627026159627026Rat
724535Cm18Cardiac mass QTL 182.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)4118856416163856416Rat
1331802Srn5Serum renin concentration QTL 53.045renin activity (VT:0005581)plasma renin activity level (CMO:0000116)4119428175157578333Rat
634347Hcar8Hepatocarcinoma resistance QTL 85.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)4123143783168143783Rat
631683Bp116Blood pressure QTL 1160.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4124303370169303370Rat
6478778Anxrr51Anxiety related response QTL 510.25384locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4124778595169778595Rat
7411558Bw133Body weight QTL 13313.840.001body mass (VT:0001259)body weight gain (CMO:0000420)4125590636170590636Rat
61451Ciaa4CIA Autoantibody QTL 43.1blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)4126395976167139601Rat
737978Pia23Pristane induced arthritis QTL 235.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4131730738167139601Rat
631511Pia7Pristane induced arthritis QTL 74.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4131730738167139601Rat
1549827Scl46Serum cholesterol level QTL 463.5blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)4132396220177396220Rat
724558Plsm2Polydactyly-luxate syndrome (PLS) morphotypes QTL 20.0003hindlimb integrity trait (VT:0010563)hind foot phalanges count (CMO:0001949)4132422778177422778Rat
61422Cia13Collagen induced arthritis QTL 134.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4132642577167139601Rat
2303623Vencon2Ventilatory control QTL 23.8respiration trait (VT:0001943)minute ventilation (CMO:0000132)4135204660180204660Rat
1578674Bmd12Bone mineral density QTL 123.8femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)4135699135180699135Rat
2293659Bmd35Bone mineral density QTL 354.50.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)4137755016181392681Rat
61362Oia2Oil induced arthritis QTL 20.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4138503169173369699Rat
1298524Oia8Oil induced arthritis QTL 8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4138503169173369699Rat
1331738Bp209Blood pressure QTL 2092.979arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)4138503169179293946Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4144639524182687754Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4144639524182687754Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4145568712182687754Rat
634342Cia24Collagen induced arthritis QTL 244.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4146565735175236377Rat
12798525Anxrr57Anxiety related response QTL 573.210.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4147278504167139601Rat
1582237Kidm34Kidney mass QTL 3440.0001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)4148090542168069246Rat
61446Coreg2Compensatory renal growth QTL 23.5kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)4148423102157580971Rat
1581574Eae20Experimental allergic encephalomyelitis QTL 207.8nervous system integrity trait (VT:0010566)percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)4153031106158841762Rat

Markers in Region
AA955967  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24155,510,343 - 155,510,477 (+)MAPPERmRatBN7.2
Rnor_6.04155,094,019 - 155,094,152NCBIRnor6.0
Rnor_5.04222,121,295 - 222,121,428UniSTSRnor5.0
RGSC_v3.44158,736,806 - 158,736,939UniSTSRGSC3.4
Celera4144,331,567 - 144,331,700UniSTS
RH 3.4 Map4997.0UniSTS
Cytogenetic Map4q42UniSTS
RH143857  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24155,529,803 - 155,529,913 (+)MAPPERmRatBN7.2
Rnor_6.04155,113,470 - 155,113,579NCBIRnor6.0
Rnor_5.04222,140,656 - 222,140,765UniSTSRnor5.0
RGSC_v3.44158,756,745 - 158,756,854UniSTSRGSC3.4
Celera4144,350,966 - 144,351,075UniSTS
RH 3.4 Map4995.1UniSTS
Cytogenetic Map4q42UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 28 19 6 8 6 3 70 28 41 10
Low 2 15 38 35 11 35 8 8 4 7 1 8
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000020529   ⟹   ENSRNOP00000020529
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4155,510,274 - 155,532,488 (-)Ensembl
Rnor_6.0 Ensembl4155,093,949 - 155,116,154 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000097485   ⟹   ENSRNOP00000094390
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4155,510,274 - 155,533,959 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000104598   ⟹   ENSRNOP00000087501
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4155,510,274 - 155,532,488 (-)Ensembl
RefSeq Acc Id: NM_001107886   ⟹   NP_001101356
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24155,510,274 - 155,532,488 (-)NCBI
Rnor_6.04155,093,949 - 155,116,154 (-)NCBI
Rnor_5.04222,121,134 - 222,143,635 (-)NCBI
RGSC_v3.44158,736,736 - 158,759,429 (-)RGD
Celera4144,331,497 - 144,353,650 (-)RGD
Sequence:
RefSeq Acc Id: XM_006237300   ⟹   XP_006237362
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24155,510,279 - 155,532,513 (-)NCBI
Rnor_6.04155,093,947 - 155,116,164 (-)NCBI
Rnor_5.04222,121,134 - 222,143,635 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006237303   ⟹   XP_006237365
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24155,510,279 - 155,532,512 (-)NCBI
Rnor_6.04155,093,947 - 155,116,164 (-)NCBI
Rnor_5.04222,121,134 - 222,143,635 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039107668   ⟹   XP_038963596
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24155,510,279 - 155,532,513 (-)NCBI
RefSeq Acc Id: XM_039107669   ⟹   XP_038963597
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24155,510,279 - 155,532,629 (-)NCBI
RefSeq Acc Id: XM_039107670   ⟹   XP_038963598
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24155,510,279 - 155,532,636 (-)NCBI
RefSeq Acc Id: XM_039107671   ⟹   XP_038963599
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24155,510,279 - 155,532,512 (-)NCBI
RefSeq Acc Id: NP_001101356   ⟸   NM_001107886
- UniProtKB: D3ZVD1 (UniProtKB/TrEMBL),   A6ILE3 (UniProtKB/TrEMBL),   A0A8I6A4A7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006237365   ⟸   XM_006237303
- Peptide Label: isoform X5
- UniProtKB: A0A8I6A4A7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006237362   ⟸   XM_006237300
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AHM8 (UniProtKB/TrEMBL),   A0A8I6A4A7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000020529   ⟸   ENSRNOT00000020529
RefSeq Acc Id: XP_038963598   ⟸   XM_039107670
- Peptide Label: isoform X4
- UniProtKB: A0A8I6A4A7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963597   ⟸   XM_039107669
- Peptide Label: isoform X3
- UniProtKB: A0A8I6A4A7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963596   ⟸   XM_039107668
- Peptide Label: isoform X2
- UniProtKB: A0A8I6A4A7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963599   ⟸   XM_039107671
- Peptide Label: isoform X6
- UniProtKB: A0A8I6A4A7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000087501   ⟸   ENSRNOT00000104598
RefSeq Acc Id: ENSRNOP00000094390   ⟸   ENSRNOT00000097485
Protein Domains
FCS-type   SAM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZVD1-F1-model_v2 AlphaFold D3ZVD1 1-1042 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309203 AgrOrtholog
BioCyc Gene G2FUF-43158 BioCyc
Ensembl Genes ENSRNOG00000015191 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000020529 ENTREZGENE
  ENSRNOT00000020529.6 UniProtKB/TrEMBL
  ENSRNOT00000097485 ENTREZGENE
  ENSRNOT00000097485.1 UniProtKB/TrEMBL
  ENSRNOT00000104598 ENTREZGENE
  ENSRNOT00000104598.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.50 UniProtKB/TrEMBL
  3.30.60.160 UniProtKB/TrEMBL
InterPro SAM UniProtKB/TrEMBL
  SAM/pointed UniProtKB/TrEMBL
  Znf_FCS UniProtKB/TrEMBL
  Znf_FCS_sf UniProtKB/TrEMBL
KEGG Report rno:312690 UniProtKB/TrEMBL
NCBI Gene 312690 ENTREZGENE
PANTHER POLYCOMB GROUP PROTEIN UniProtKB/TrEMBL
  POLYHOMEOTIC-LIKE PROTEIN 1 UniProtKB/TrEMBL
Pfam PHC2_SAM_assoc UniProtKB/TrEMBL
  SAM_1 UniProtKB/TrEMBL
  zf-FCS_1 UniProtKB/TrEMBL
PhenoGen Phc1 PhenoGen
PROSITE SAM_DOMAIN UniProtKB/TrEMBL
  ZF_FCS UniProtKB/TrEMBL
RatGTEx ENSRNOG00000015191 RatGTEx
SMART SAM UniProtKB/TrEMBL
Superfamily-SCOP SAM_homology UniProtKB/TrEMBL
UniProt A0A8I6A4A7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AHM8 ENTREZGENE, UniProtKB/TrEMBL
  A6ILE3 ENTREZGENE, UniProtKB/TrEMBL
  D3ZVD1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-01-27 Phc1  polyhomeotic homolog 1  Phc1  polyhomeotic homolog 1 (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-04-29 Phc1  polyhomeotic homolog 1 (Drosophila)  Phc1  polyhomeotic-like 1 (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Phc1  polyhomeotic-like 1 (Drosophila)   Phc1_predicted  polyhomeotic-like 1 (Drosophila) (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Phc1_predicted  polyhomeotic-like 1 (Drosophila) (predicted)      Symbol and Name status set to approved 70820 APPROVED