Hnrnpf (heterogeneous nuclear ribonucleoprotein F)

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Gene: Hnrnpf (heterogeneous nuclear ribonucleoprotein F) Rattus norvegicus

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Symbol:

Hnrnpf

Name:

heterogeneous nuclear ribonucleoprotein F

RGD ID:

620366

Description:

Enables TBP-class protein binding activity. Predicted to be involved in regulation of RNA splicing. Predicted to be located in cytosol. Predicted to be part of catalytic step 2 spliceosome. Predicted to be active in nucleoplasm and synapse. Orthologous to human HNRNPF (heterogeneous nuclear ribonucleoprotein F); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 3H-1,2-dithiole-3-thione.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

hnRNP F; Hnrpf; MGC125106; ribonucleoprotein F

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	152,755,668 - 152,776,867 (+)	NCBI		GRCr8
mRatBN7.2	4	151,083,262 - 151,104,464 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	151,083,062 - 151,109,038 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	157,345,624 - 157,366,761 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	153,129,584 - 153,150,719 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	151,752,602 - 151,773,735 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	149,957,143 - 149,978,896 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	149,957,206 - 149,978,895 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	215,886,322 - 215,908,012 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	154,207,198 - 154,228,398 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	154,471,357 - 154,473,232 (+)	NCBI
Celera	4	139,958,784 - 139,979,932 (+)	NCBI		Celera
Cytogenetic Map	4	q42	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

renal glycosuria (ISS)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

(Z)-3-butylidenephthalide (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17beta-hydroxy-17-methylestra-4,9,11-trien-3-one (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2-palmitoylglycerol (ISO)

3H-1,2-dithiole-3-thione (EXP)

4,4'-sulfonyldiphenol (EXP)

4-hydroxyphenyl retinamide (ISO)

5-aza-2'-deoxycytidine (ISO)

5-fluorouracil (ISO)

6-propyl-2-thiouracil (EXP)

actinomycin D (ISO)

Aflatoxin B2 alpha (ISO)

amitrole (EXP)

ammonium chloride (EXP)

antirheumatic drug (ISO)

Aroclor 1254 (ISO)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP)

cadmium dichloride (EXP,ISO)

caffeine (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chlorpyrifos (EXP)

choline (ISO)

chrysene (ISO)

cisplatin (EXP)

cobalt dichloride (ISO)

copper atom (ISO)

copper(0) (ISO)

coumarin (ISO)

cyclosporin A (ISO)

DDE (ISO)

Dibutyl phosphate (ISO)

doxorubicin (ISO)

enzyme inhibitor (ISO)

flutamide (EXP)

folic acid (ISO)

FR900359 (ISO)

gentamycin (EXP)

glyphosate (EXP)

ivermectin (ISO)

L-methionine (ISO)

lovastatin (ISO)

Mesaconitine (EXP)

methimazole (EXP)

nefazodone (EXP)

nickel atom (ISO)

Nutlin-3 (ISO)

ochratoxin A (ISO)

oxaliplatin (EXP)

ozone (EXP)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (EXP)

phenethyl isothiocyanate (ISO)

pirinixic acid (EXP,ISO)

pregnenolone 16alpha-carbonitrile (EXP)

quinomethionate (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

sulforaphane (ISO)

tetrachloromethane (EXP)

tetraphene (ISO)

thiram (ISO)

titanium dioxide (ISO)

topotecan (EXP)

tributylstannane (EXP)

trichloroethene (EXP)

triptonide (ISO)

trovafloxacin (ISO)

valproic acid (ISO)

warfarin (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mRNA processing (IEA)

regulation of RNA splicing (IBA,ISO,ISS)

RNA splicing (IEA)

Cellular Component

catalytic step 2 spliceosome (ISO)

cytosol (ISO)

nucleoplasm (IBA,ISO)

ribonucleoprotein complex (IBA)

synapse (ISO)

Molecular Function

protein binding (IPI,ISO)

RNA binding (IBA)

single-stranded RNA binding (ISO,ISS)

TBP-class protein binding (IPI)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
4.	GOA pipeline	RGD automated data pipeline
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Heterogeneous nuclear ribonucleoprotein K modulates angiotensinogen gene expression in kidney cells.	Wei CC, etal., J Biol Chem. 2006 Sep 1;281(35):25344-55. Epub 2006 Jul 12.
7.	Association of the rat heterogeneous nuclear RNA-ribonucleoprotein F with TATA-binding protein.	Yoshida T, etal., FEBS Lett 1999 Aug 27;457(2):251-4.

Additional References at PubMed

PMID:9111328	PMID:11991638	PMID:12477932	PMID:15489334	PMID:15659559	PMID:18573884	PMID:19946888	PMID:20526337	PMID:22082260	PMID:22658674	PMID:22681889	PMID:26316108
PMID:28424160	PMID:29476059	PMID:31505169	PMID:35352799

Genomics

Comparative Map Data

Hnrnpf
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	152,755,668 - 152,776,867 (+)	NCBI		GRCr8
mRatBN7.2	4	151,083,262 - 151,104,464 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	151,083,062 - 151,109,038 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	157,345,624 - 157,366,761 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	153,129,584 - 153,150,719 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	151,752,602 - 151,773,735 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	149,957,143 - 149,978,896 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	149,957,206 - 149,978,895 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	215,886,322 - 215,908,012 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	154,207,198 - 154,228,398 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	154,471,357 - 154,473,232 (+)	NCBI
Celera	4	139,958,784 - 139,979,932 (+)	NCBI		Celera
Cytogenetic Map	4	q42	NCBI

HNRNPF
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	43,385,618 - 43,409,186 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	43,385,617 - 43,409,186 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	10	43,881,066 - 43,904,634 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	43,201,071 - 43,224,702 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	10	43,201,070 - 43,224,620	NCBI
Celera	10	39,883,455 - 39,907,087 (-)	NCBI		Celera
Cytogenetic Map	10	q11.21	NCBI
HuRef	10	40,407,603 - 40,431,235 (-)	NCBI		HuRef
CHM1_1	10	43,920,400 - 43,944,037 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	10	44,264,607 - 44,288,176 (-)	NCBI		T2T-CHM13v2.0

Hnrnpf
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	117,877,301 - 117,902,583 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	117,877,285 - 117,902,583 (+)	Ensembl		GRCm39 Ensembl
GRCm38	6	117,900,340 - 117,925,622 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	117,900,324 - 117,925,622 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	117,850,358 - 117,875,640 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	117,872,436 - 117,891,238 (+)	NCBI		MGSCv36	mm8
Celera	6	119,720,885 - 119,746,167 (+)	NCBI		Celera
Cytogenetic Map	6	F1	NCBI
cM Map	6	55.66	NCBI

Hnrnpf
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955546	1,386,186 - 1,401,071 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955546	1,386,186 - 1,401,071 (-)	NCBI	ChiLan1.0	ChiLan1.0

HNRNPF
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	56,108,006 - 56,131,277 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	56,113,335 - 56,136,606 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	40,368,029 - 40,391,406 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	43,548,945 - 43,572,750 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

HNRNPF
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	28	3,651,685 - 3,672,320 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	28	3,670,455 - 3,671,699 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	28	3,884,981 - 3,905,567 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	28	3,830,441 - 3,851,040 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	28	3,830,470 - 3,851,057 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	28	3,627,701 - 3,648,283 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	28	3,670,843 - 3,691,409 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	28	3,804,685 - 3,825,327 (+)	NCBI		UU_Cfam_GSD_1.0

Hnrnpf
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	83,520,630 - 83,542,686 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936617	3,241,299 - 3,263,318 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

HNRNPF
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	61,644,965 - 61,667,940 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	61,646,712 - 61,667,947 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	66,478,356 - 66,498,623 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

HNRNPF
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	39,058,238 - 39,083,825 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666056	47,386,999 - 47,411,260 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Hnrnpf
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624922	471,853 - 571,678 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624922	555,345 - 571,586 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Hnrnpf
92 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	49
Count of miRNA genes:	47
Interacting mature miRNAs:	47
Transcripts:	ENSRNOT00000019529
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1582237	Kidm34	Kidney mass QTL 34	4	0.0001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	4	148090542	168069246	Rat
61446	Coreg2	Compensatory renal growth QTL 2	3.5		kidney mass (VT:0002707)	compensatory renal growth score (CMO:0001894)	4	148423102	157580971	Rat
1300116	Hrtrt5	Heart rate QTL 5	3.76		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	4	116179486	151161268	Rat
6478693	Anxrr32	Anxiety related response QTL 32		0.00092	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	4	144639524	182687754	Rat
10755501	Bp390	Blood pressure QTL 390	2.5		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	4	26775591	168368347	Rat
631683	Bp116	Blood pressure QTL 116		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	124303370	169303370	Rat
61451	Ciaa4	CIA Autoantibody QTL 4	3.1		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	4	126395976	167139601	Rat
1331738	Bp209	Blood pressure QTL 209	2.979		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	138503169	179293946	Rat
6478700	Anxrr33	Anxiety related response QTL 33		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	144639524	182687754	Rat
1549827	Scl46	Serum cholesterol level QTL 46	3.5		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	4	132396220	177396220	Rat
731165	Uae21	Urinary albumin excretion QTL 21	2.4	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	4	106649412	151649412	Rat
737821	Hcar9	Hepatocarcinoma resistance QTL 9	3.7		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	4	109866907	167139601	Rat
7411558	Bw133	Body weight QTL 133	13.84	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	125590636	170590636	Rat
10401796	Kidm48	Kidney mass QTL 48			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	4	145568712	182687754	Rat
6478718	Anxrr34	Anxiety related response QTL 34		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	144639524	182687754	Rat
1549832	Bss3	Bone structure and strength QTL 3	11		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	4	109827074	154827074	Rat
70177	Xhs1	X-ray hypersensitivity QTL 1	25.1		intestine integrity trait (VT:0010554)	post-insult time to onset of moribundity (CMO:0001896)	4	82798864	152731274	Rat
2303623	Vencon2	Ventilatory control QTL 2	3.8		respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	4	135204660	180204660	Rat
1578674	Bmd12	Bone mineral density QTL 12	3.8		femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	4	135699135	180699135	Rat
737978	Pia23	Pristane induced arthritis QTL 23	5.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	131730738	167139601	Rat
61362	Oia2	Oil induced arthritis QTL 2		0.001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	138503169	173369699	Rat
2293659	Bmd35	Bone mineral density QTL 35	4.5	0.0001	femur strength trait (VT:0010010)	femoral neck ultimate force (CMO:0001703)	4	137755016	181392681	Rat
1331759	Hrtrt13	Heart rate QTL 13	3.54628		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	4	110275411	168266883	Rat
724535	Cm18	Cardiac mass QTL 18	2.6		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	4	118856416	163856416	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	11320076	180699135	Rat
6478754	Anxrr43	Anxiety related response QTL 43		0.14035	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	144639524	182687754	Rat
724558	Plsm2	Polydactyly-luxate syndrome (PLS) morphotypes QTL 2		0.0003	hindlimb integrity trait (VT:0010563)	hind foot phalanges count (CMO:0001949)	4	132422778	177422778	Rat
6478763	Anxrr46	Anxiety related response QTL 46		0.07428	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	110870972	155870972	Rat
6478760	Anxrr45	Anxiety related response QTL 45		0.06717	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	110870972	155870972	Rat
1331802	Srn5	Serum renin concentration QTL 5	3.045		renin activity (VT:0005581)	plasma renin activity level (CMO:0000116)	4	119428175	157578333	Rat
1298524	Oia8	Oil induced arthritis QTL 8			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	138503169	173369699	Rat
738009	Sach4	Saccharine consumption QTL 4	4.9	0.000016	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	4	59948935	154902892	Rat
7207480	Bss105	Bone structure and strength QTL 105	8.1		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	4	109827074	154827074	Rat
634335	Anxrr16	Anxiety related response QTL 16	7.22		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	4	93308457	167139447	Rat
6478778	Anxrr51	Anxiety related response QTL 51		0.25384	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	4	124778595	169778595	Rat
631511	Pia7	Pristane induced arthritis QTL 7	4.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	131730738	167139601	Rat
61406	Scwia1	Streptococcal cell wall induced arthritis QTL 1	2.3		joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	4	106805662	151805662	Rat
634347	Hcar8	Hepatocarcinoma resistance QTL 8	5.8		liver integrity trait (VT:0010547)	liver tumorous lesion area to total liver area ratio (CMO:0001075)	4	123143783	168143783	Rat
738031	Alc14	Alcohol consumption QTL 14	7.6	0.00003	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	59948935	154902892	Rat
1576316	Ept5	Estrogen-induced pituitary tumorigenesis QTL 5	3.8		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	4	83428419	177635233	Rat
1576305	Emca6	Estrogen-induced mammary cancer QTL 6	5.8		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	4	44463720	155883716	Rat
738016	Alc16	Alcohol consumption QTL 16	3.6	0.00015	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	59948935	154902892	Rat
1358202	Gluco11	Glucose level QTL 11	2.4	0.02	adipocyte glucose uptake trait (VT:0004185)	absolute change in adipocyte glucose uptake (CMO:0000873)	4	85379421	167139601	Rat
61422	Cia13	Collagen induced arthritis QTL 13	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	132642577	167139601	Rat
634342	Cia24	Collagen induced arthritis QTL 24	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	146565735	175236377	Rat
631674	Iddm14	Insulin dependent diabetes mellitus QTL 14			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	4	64528739	157573521	Rat
12798519	Anxrr54	Anxiety related response QTL 54	2.54	0.05	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	114627026	159627026	Rat
6478748	Anxrr42	Anxiety related response QTL 42		0.28008	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	144639524	182687754	Rat
12798525	Anxrr57	Anxiety related response QTL 57	3.21	0.05	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	147278504	167139601	Rat

Markers in Region

Hnrnpf

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	151,103,480 - 151,103,805 (+)	MAPPER	mRatBN7.2
mRatBN7.2	6	16,145,375 - 16,145,698 (-)	MAPPER	mRatBN7.2
Rnor_6.0	6	1,508,288 - 1,508,610	NCBI	Rnor6.0
Rnor_6.0	4	149,977,913 - 149,978,237	NCBI	Rnor6.0
Rnor_5.0	6	1,498,397 - 1,498,719	UniSTS	Rnor5.0
Rnor_5.0	4	215,907,029 - 215,907,353	UniSTS	Rnor5.0
RGSC_v3.4	4	154,227,415 - 154,227,739	UniSTS	RGSC3.4
RGSC_v3.4	6	1,690,066 - 1,690,388	UniSTS	RGSC3.4
Celera	6	15,809,990 - 15,810,312	UniSTS
Celera	4	139,978,949 - 139,979,273	UniSTS
Cytogenetic Map	6	q11	UniSTS
Cytogenetic Map	4	q42	UniSTS

RH125671

Rat Assembly	Chr	Position (strand)	Source
Celera	2	166,982,807 - 166,983,009	UniSTS
Celera	4	139,979,678 - 139,979,881	UniSTS
Cytogenetic Map	4	q42	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001037285	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001037286	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001037287	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_022397	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008763262	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592869	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592870	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592871	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592872	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592873	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592874	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592875	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039108313	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039108314	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286660	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB022209	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC097275	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC103634	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473964	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CK359545	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CK366752	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CK473366	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ233657	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000019529 ⟹ ENSRNOP00000019529

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	151,083,431 - 151,104,463 (+)	Ensembl
Rnor_6.0 Ensembl	4	149,970,237 - 149,978,895 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000083843 ⟹ ENSRNOP00000068652

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	151,083,239 - 151,104,456 (+)	Ensembl
Rnor_6.0 Ensembl	4	149,957,206 - 149,978,895 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000091765 ⟹ ENSRNOP00000069655

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	151,083,075 - 151,107,223 (+)	Ensembl
Rnor_6.0 Ensembl	4	149,970,567 - 149,978,895 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000108423 ⟹ ENSRNOP00000081128

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	151,083,062 - 151,109,038 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000108890 ⟹ ENSRNOP00000087661

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	151,084,126 - 151,109,038 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000112326 ⟹ ENSRNOP00000079597

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	151,090,970 - 151,109,038 (+)	Ensembl

RefSeq Acc Id:

NM_001037285 ⟹ NP_001032362

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	152,768,399 - 152,776,867 (+)	NCBI
mRatBN7.2	4	151,095,995 - 151,104,464 (+)	NCBI
Rnor_6.0	4	149,970,237 - 149,978,896 (+)	NCBI
Rnor_5.0	4	215,886,322 - 215,908,012 (+)	NCBI
RGSC_v3.4	4	154,207,198 - 154,228,398 (+)	RGD
Celera	4	139,971,463 - 139,979,932 (+)	NCBI

Sequence:

show sequence

CACGCGGCTGCTGCTTCCCGGACTCCGGACTCGAACGCCCGTCTCGGCGTGGTGAGCCCCGCTT
CCCGCCCGAGCCCCAGGTTGAGAACAAAAAGAAGATGCACCTGGACTTTCCCCGGAGCCCTCTG
CGTTTTTAAGGCGTCGGGTGGAGTTGGGGTTCGTAAGCCGCGTTCGTTATTGAAAATAGAAGTC
ACTTCTACCTTCCTCCCGTGGAAAACTTGTTATCTTCCATTCTGTGTTTCCTACAGAAGGCATC
TGTGGTGGTTCTTTAAGCTACAAAAAATTGCCCAAGCTTGTGTGACATCAACCCTGTCAAGTGT
CCATGATGCTGGGCCCTGAGGGAGGTGAAGGCTATGTGGTCAAACTCCGTGGCCTACCCTGGTC
CTGCTCAATTGAGGACGTACAAAACTTCCTCTCCGACTGCACAATTCATGATGGGGTCGCAGGT
GTTCATTTCATTTATACTAGAGAAGGCAGGCAGAGTGGTGAGGCTTTTGTTGAACTTGAGTCAG
AAGATGATGTAAAATTGGCTCTGAAAAAAGACAGGGAAAGCATGGGACACCGGTATATTGAGGT
GTTCAAGTCACACAGAACCGAGATGGATTGGGTGTTGAAGCACAGTGGTCCAAACAGCGCCGAC
AGTGCCAATGATGGCTTTGTGAGGCTTCGGGGACTCCCGTTTGGATGCACAAAGGAAGAAATCG
TTCAGTTCTTCTCAGGGTTGGAAATTGTGCCAAACGGGATCACACTACCTGTGGACCCGGAAGG
CAAGATTACAGGGGAGGCCTTCGTTCAGTTTGCCTCACAAGAGTTAGCCGAGAAAGCTTTAGGG
AAGCACAAGGAGAGAATAGGGCACAGGTATATTGAAGTGTTCAAGAGCAGTCAGGAGGAAGTTA
GGTCATACTCAGATCCACCTCTGAAGTTTATGTCTGTGCAGAGGCCTGGGCCTTATGACAGGCC
TGGCACAGCCCGGAGGTACATTGGCATTGTGAAACAGGCAGGCCTGGATAGGATGAGGTCTGGT
GCCTATAGTGCAGGCTATGGGGGCTATGAAGAATACAGTGGCCTCAGTGATGGCTATGGCTTCA
CCACTGACCTGTTTGGGAGAGACCTCAGCTATTGTCTCTCAGGAATGTATGATCACAGATACGG
AGACAGCGAGTTCACAGTGCAGAGCACCACCGGCCACTGCGTCCACATGAGAGGGCTGCCCTAC
AAAGCAACGGAGAACGACATTTACAACTTCTTCTCTCCACTCAACCCTGTGAGAGTTCATATTG
AGATTGGTCCTGATGGAAGAGTGACCGGAGAAGCTGATGTTGAGTTTGCTACTCATGAAGAAGC
AGTGGCAGCTATGTCCAAGGACAGGGCCAACATGCAGCACAGATACATAGAACTCTTCCTGAAT
TCAACAACAGGAGCTAGCAATGGGGCTTATAGCAGCCAGGTGATGCAGGGCATGGGTGTGTCAG
CTGCCCAGGCAACTTACAGTGGCCTGGAGAGCCAGTCAGTGAGTGGCTGTTACGGGGCCGGCTA
CAGCGGTCAGAACAGCATGGGTGGATATGATTAGTATTGTAGGAACATTTGGGTTATTTCAATC
AGAAAATTTCACAGGCAGCCAATAAACAGTCAAGAGCAGTTTATAACTCTAGAGGAAGCTGGGG
GACCCACTTTGCACCATGAGTTTGTGAAATCTGGATTAAAAAATTACCTCTTCAGTGTTTCTCA
TGCAAACTTTTCTTCTAGCATGTAATATTGAGTAAACTAAAAACTATTTTCTTCCGCTTTTCTC
AATTAACATTTTTGGTAGTATACTTAAGAGTGATGTTATCTGAGTTAAGTAGTTTAAGTATGTT
GAGTGGATCTTTCAGCACACCACAGTGAACACACTGGGGGCATGTACTTTTCTGGAGAACTCAA
GGTGCTAGATCCCTGATGCAAAGAGAAGCATTTCTCATGTTCATTCTAGTTTATATTTTCATTT
AAAATCTTTAGGTTAAGTTTAAGCTTTTTAAAAGTTAGTTTTGAGAATTGAGACACAATACTAA
TACTGTAGGAATTGGTGAGGCCTTGACTTAAAGCTTTCTTTGTACTGTGATTTCCTTTTGGGTG
TATTTTGCTAAGTGAAACTTGTTAAATTTTTTGTTAACTAAATTTTTTTCTTAAAATAAAGACT
TTTTCACAATGAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001037286 ⟹ NP_001032363

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	152,768,729 - 152,776,867 (+)	NCBI
mRatBN7.2	4	151,096,325 - 151,104,464 (+)	NCBI
Rnor_6.0	4	149,970,567 - 149,978,896 (+)	NCBI
Rnor_5.0	4	215,886,322 - 215,908,012 (+)	NCBI
RGSC_v3.4	4	154,207,198 - 154,228,398 (+)	RGD
Celera	4	139,971,793 - 139,979,932 (+)	NCBI

Sequence:

show sequence

CGGGCGAAGGCCGCGGAGCAGCGTCACCTTGCCCTCCGCCCTGCTTCCCGCCAAAACGCTCGTC
TCAAGGGGCTCCGCTTCCGCAAAAGCGTTTCCCCTGGTCATTTGAACTTCCATTTCAGGTTGAG
AACAAAAAGAAGATGCACCTGGACTTTCCCCGGAGCCCTCTGCGTTTTTAAGGCGTCGGGTGGA
GTTGGGGTTCGTAAGCCGCGTTCGTTATTGAAAATAGAAGTCACTTCTACCTTCCTCCCGTGGA
AAACTTGTTATCTTCCATTCTGTGTTTCCTACAGAAGGCATCTGTGGTGGTTCTTTAAGCTACA
AAAAATTGCCCAAGCTTGTGTGACATCAACCCTGTCAAGTGTCCATGATGCTGGGCCCTGAGGG
AGGTGAAGGCTATGTGGTCAAACTCCGTGGCCTACCCTGGTCCTGCTCAATTGAGGACGTACAA
AACTTCCTCTCCGACTGCACAATTCATGATGGGGTCGCAGGTGTTCATTTCATTTATACTAGAG
AAGGCAGGCAGAGTGGTGAGGCTTTTGTTGAACTTGAGTCAGAAGATGATGTAAAATTGGCTCT
GAAAAAAGACAGGGAAAGCATGGGACACCGGTATATTGAGGTGTTCAAGTCACACAGAACCGAG
ATGGATTGGGTGTTGAAGCACAGTGGTCCAAACAGCGCCGACAGTGCCAATGATGGCTTTGTGA
GGCTTCGGGGACTCCCGTTTGGATGCACAAAGGAAGAAATCGTTCAGTTCTTCTCAGGGTTGGA
AATTGTGCCAAACGGGATCACACTACCTGTGGACCCGGAAGGCAAGATTACAGGGGAGGCCTTC
GTTCAGTTTGCCTCACAAGAGTTAGCCGAGAAAGCTTTAGGGAAGCACAAGGAGAGAATAGGGC
ACAGGTATATTGAAGTGTTCAAGAGCAGTCAGGAGGAAGTTAGGTCATACTCAGATCCACCTCT
GAAGTTTATGTCTGTGCAGAGGCCTGGGCCTTATGACAGGCCTGGCACAGCCCGGAGGTACATT
GGCATTGTGAAACAGGCAGGCCTGGATAGGATGAGGTCTGGTGCCTATAGTGCAGGCTATGGGG
GCTATGAAGAATACAGTGGCCTCAGTGATGGCTATGGCTTCACCACTGACCTGTTTGGGAGAGA
CCTCAGCTATTGTCTCTCAGGAATGTATGATCACAGATACGGAGACAGCGAGTTCACAGTGCAG
AGCACCACCGGCCACTGCGTCCACATGAGAGGGCTGCCCTACAAAGCAACGGAGAACGACATTT
ACAACTTCTTCTCTCCACTCAACCCTGTGAGAGTTCATATTGAGATTGGTCCTGATGGAAGAGT
GACCGGAGAAGCTGATGTTGAGTTTGCTACTCATGAAGAAGCAGTGGCAGCTATGTCCAAGGAC
AGGGCCAACATGCAGCACAGATACATAGAACTCTTCCTGAATTCAACAACAGGAGCTAGCAATG
GGGCTTATAGCAGCCAGGTGATGCAGGGCATGGGTGTGTCAGCTGCCCAGGCAACTTACAGTGG
CCTGGAGAGCCAGTCAGTGAGTGGCTGTTACGGGGCCGGCTACAGCGGTCAGAACAGCATGGGT
GGATATGATTAGTATTGTAGGAACATTTGGGTTATTTCAATCAGAAAATTTCACAGGCAGCCAA
TAAACAGTCAAGAGCAGTTTATAACTCTAGAGGAAGCTGGGGGACCCACTTTGCACCATGAGTT
TGTGAAATCTGGATTAAAAAATTACCTCTTCAGTGTTTCTCATGCAAACTTTTCTTCTAGCATG
TAATATTGAGTAAACTAAAAACTATTTTCTTCCGCTTTTCTCAATTAACATTTTTGGTAGTATA
CTTAAGAGTGATGTTATCTGAGTTAAGTAGTTTAAGTATGTTGAGTGGATCTTTCAGCACACCA
CAGTGAACACACTGGGGGCATGTACTTTTCTGGAGAACTCAAGGTGCTAGATCCCTGATGCAAA
GAGAAGCATTTCTCATGTTCATTCTAGTTTATATTTTCATTTAAAATCTTTAGGTTAAGTTTAA
GCTTTTTAAAAGTTAGTTTTGAGAATTGAGACACAATACTAATACTGTAGGAATTGGTGAGGCC
TTGACTTAAAGCTTTCTTTGTACTGTGATTTCCTTTTGGGTGTATTTTGCTAAGTGAAACTTGT
TAAATTTTTTGTTAACTAAATTTTTTTCTTAAAATAAAGACTTTTTCACAATGAAAAAAAAAAA
AAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001037287 ⟹ NP_001032364

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	152,755,668 - 152,776,867 (+)	NCBI
mRatBN7.2	4	151,083,262 - 151,104,464 (+)	NCBI
Rnor_6.0	4	149,957,206 - 149,978,896 (+)	NCBI
Rnor_5.0	4	215,886,322 - 215,908,012 (+)	NCBI
RGSC_v3.4	4	154,207,198 - 154,228,398 (+)	RGD
Celera	4	139,958,784 - 139,979,932 (+)	RGD

Sequence:

show sequence

CGTCGTGGAAGGAGGACTGCGCCTCGTCTTCCTGAAGGTTGAGAACAAAAAGAAGATGCACCTG
GACTTTCCCCGGAGCCCTCTGCGTTTTTAAGGCGTCGGGTGGAGTTGGGGTTCGTAAGCCGCGT
TCGTTATTGAAAATAGAAGTCACTTCTACCTTCCTCCCGTGGAAAACTTGTTATCTTCCATTCT
GTGTTTCCTACAGAAGGCATCTGTGGTGGTTCTTTAAGCTACAAAAAATTGCCCAAGCTTGTGT
GACATCAACCCTGTCAAGTGTCCATGATGCTGGGCCCTGAGGGAGGTGAAGGCTATGTGGTCAA
ACTCCGTGGCCTACCCTGGTCCTGCTCAATTGAGGACGTACAAAACTTCCTCTCCGACTGCACA
ATTCATGATGGGGTCGCAGGTGTTCATTTCATTTATACTAGAGAAGGCAGGCAGAGTGGTGAGG
CTTTTGTTGAACTTGAGTCAGAAGATGATGTAAAATTGGCTCTGAAAAAAGACAGGGAAAGCAT
GGGACACCGGTATATTGAGGTGTTCAAGTCACACAGAACCGAGATGGATTGGGTGTTGAAGCAC
AGTGGTCCAAACAGCGCCGACAGTGCCAATGATGGCTTTGTGAGGCTTCGGGGACTCCCGTTTG
GATGCACAAAGGAAGAAATCGTTCAGTTCTTCTCAGGGTTGGAAATTGTGCCAAACGGGATCAC
ACTACCTGTGGACCCGGAAGGCAAGATTACAGGGGAGGCCTTCGTTCAGTTTGCCTCACAAGAG
TTAGCCGAGAAAGCTTTAGGGAAGCACAAGGAGAGAATAGGGCACAGGTATATTGAAGTGTTCA
AGAGCAGTCAGGAGGAAGTTAGGTCATACTCAGATCCACCTCTGAAGTTTATGTCTGTGCAGAG
GCCTGGGCCTTATGACAGGCCTGGCACAGCCCGGAGGTACATTGGCATTGTGAAACAGGCAGGC
CTGGATAGGATGAGGTCTGGTGCCTATAGTGCAGGCTATGGGGGCTATGAAGAATACAGTGGCC
TCAGTGATGGCTATGGCTTCACCACTGACCTGTTTGGGAGAGACCTCAGCTATTGTCTCTCAGG
AATGTATGATCACAGATACGGAGACAGCGAGTTCACAGTGCAGAGCACCACCGGCCACTGCGTC
CACATGAGAGGGCTGCCCTACAAAGCAACGGAGAACGACATTTACAACTTCTTCTCTCCACTCA
ACCCTGTGAGAGTTCATATTGAGATTGGTCCTGATGGAAGAGTGACCGGAGAAGCTGATGTTGA
GTTTGCTACTCATGAAGAAGCAGTGGCAGCTATGTCCAAGGACAGGGCCAACATGCAGCACAGA
TACATAGAACTCTTCCTGAATTCAACAACAGGAGCTAGCAATGGGGCTTATAGCAGCCAGGTGA
TGCAGGGCATGGGTGTGTCAGCTGCCCAGGCAACTTACAGTGGCCTGGAGAGCCAGTCAGTGAG
TGGCTGTTACGGGGCCGGCTACAGCGGTCAGAACAGCATGGGTGGATATGATTAGTATTGTAGG
AACATTTGGGTTATTTCAATCAGAAAATTTCACAGGCAGCCAATAAACAGTCAAGAGCAGTTTA
TAACTCTAGAGGAAGCTGGGGGACCCACTTTGCACCATGAGTTTGTGAAATCTGGATTAAAAAA
TTACCTCTTCAGTGTTTCTCATGCAAACTTTTCTTCTAGCATGTAATATTGAGTAAACTAAAAA
CTATTTTCTTCCGCTTTTCTCAATTAACATTTTTGGTAGTATACTTAAGAGTGATGTTATCTGA
GTTAAGTAGTTTAAGTATGTTGAGTGGATCTTTCAGCACACCACAGTGAACACACTGGGGGCAT
GTACTTTTCTGGAGAACTCAAGGTGCTAGATCCCTGATGCAAAGAGAAGCATTTCTCATGTTCA
TTCTAGTTTATATTTTCATTTAAAATCTTTAGGTTAAGTTTAAGCTTTTTAAAAGTTAGTTTTG
AGAATTGAGACACAATACTAATACTGTAGGAATTGGTGAGGCCTTGACTTAAAGCTTTCTTTGT
ACTGTGATTTCCTTTTGGGTGTATTTTGCTAAGTGAAACTTGTTAAATTTTTTGTTAACTAAAT
TTTTTTCTTAAAATAAAGACTTTTTCACAATGAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_022397 ⟹ NP_071792

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	152,768,399 - 152,776,867 (+)	NCBI
mRatBN7.2	4	151,095,995 - 151,104,464 (+)	NCBI
Rnor_6.0	4	149,970,237 - 149,978,896 (+)	NCBI
Rnor_5.0	4	215,886,322 - 215,908,012 (+)	NCBI
RGSC_v3.4	4	154,207,198 - 154,228,398 (+)	RGD
Celera	4	139,971,463 - 139,979,932 (+)	NCBI

Sequence:

show sequence

CACGCGGCTGCTGCTTCCCGGACTCCGGACTCGAACGCCCGTCTCGGCGTGGTTGAGAACAAAA
AGAAGATGCACCTGGACTTTCCCCGGAGCCCTCTGCGTTTTTAAGGCGTCGGGTGGAGTTGGGG
TTCGTAAGCCGCGTTCGTTATTGAAAATAGAAGTCACTTCTACCTTCCTCCCGTGGAAAACTTG
TTATCTTCCATTCTGTGTTTCCTACAGAAGGCATCTGTGGTGGTTCTTTAAGCTACAAAAAATT
GCCCAAGCTTGTGTGACATCAACCCTGTCAAGTGTCCATGATGCTGGGCCCTGAGGGAGGTGAA
GGCTATGTGGTCAAACTCCGTGGCCTACCCTGGTCCTGCTCAATTGAGGACGTACAAAACTTCC
TCTCCGACTGCACAATTCATGATGGGGTCGCAGGTGTTCATTTCATTTATACTAGAGAAGGCAG
GCAGAGTGGTGAGGCTTTTGTTGAACTTGAGTCAGAAGATGATGTAAAATTGGCTCTGAAAAAA
GACAGGGAAAGCATGGGACACCGGTATATTGAGGTGTTCAAGTCACACAGAACCGAGATGGATT
GGGTGTTGAAGCACAGTGGTCCAAACAGCGCCGACAGTGCCAATGATGGCTTTGTGAGGCTTCG
GGGACTCCCGTTTGGATGCACAAAGGAAGAAATCGTTCAGTTCTTCTCAGGGTTGGAAATTGTG
CCAAACGGGATCACACTACCTGTGGACCCGGAAGGCAAGATTACAGGGGAGGCCTTCGTTCAGT
TTGCCTCACAAGAGTTAGCCGAGAAAGCTTTAGGGAAGCACAAGGAGAGAATAGGGCACAGGTA
TATTGAAGTGTTCAAGAGCAGTCAGGAGGAAGTTAGGTCATACTCAGATCCACCTCTGAAGTTT
ATGTCTGTGCAGAGGCCTGGGCCTTATGACAGGCCTGGCACAGCCCGGAGGTACATTGGCATTG
TGAAACAGGCAGGCCTGGATAGGATGAGGTCTGGTGCCTATAGTGCAGGCTATGGGGGCTATGA
AGAATACAGTGGCCTCAGTGATGGCTATGGCTTCACCACTGACCTGTTTGGGAGAGACCTCAGC
TATTGTCTCTCAGGAATGTATGATCACAGATACGGAGACAGCGAGTTCACAGTGCAGAGCACCA
CCGGCCACTGCGTCCACATGAGAGGGCTGCCCTACAAAGCAACGGAGAACGACATTTACAACTT
CTTCTCTCCACTCAACCCTGTGAGAGTTCATATTGAGATTGGTCCTGATGGAAGAGTGACCGGA
GAAGCTGATGTTGAGTTTGCTACTCATGAAGAAGCAGTGGCAGCTATGTCCAAGGACAGGGCCA
ACATGCAGCACAGATACATAGAACTCTTCCTGAATTCAACAACAGGAGCTAGCAATGGGGCTTA
TAGCAGCCAGGTGATGCAGGGCATGGGTGTGTCAGCTGCCCAGGCAACTTACAGTGGCCTGGAG
AGCCAGTCAGTGAGTGGCTGTTACGGGGCCGGCTACAGCGGTCAGAACAGCATGGGTGGATATG
ATTAGTATTGTAGGAACATTTGGGTTATTTCAATCAGAAAATTTCACAGGCAGCCAATAAACAG
TCAAGAGCAGTTTATAACTCTAGAGGAAGCTGGGGGACCCACTTTGCACCATGAGTTTGTGAAA
TCTGGATTAAAAAATTACCTCTTCAGTGTTTCTCATGCAAACTTTTCTTCTAGCATGTAATATT
GAGTAAACTAAAAACTATTTTCTTCCGCTTTTCTCAATTAACATTTTTGGTAGTATACTTAAGA
GTGATGTTATCTGAGTTAAGTAGTTTAAGTATGTTGAGTGGATCTTTCAGCACACCACAGTGAA
CACACTGGGGGCATGTACTTTTCTGGAGAACTCAAGGTGCTAGATCCCTGATGCAAAGAGAAGC
ATTTCTCATGTTCATTCTAGTTTATATTTTCATTTAAAATCTTTAGGTTAAGTTTAAGCTTTTT
AAAAGTTAGTTTTGAGAATTGAGACACAATACTAATACTGTAGGAATTGGTGAGGCCTTGACTT
AAAGCTTTCTTTGTACTGTGATTTCCTTTTGGGTGTATTTTGCTAAGTGAAACTTGTTAAATTT
TTTGTTAACTAAATTTTTTTCTTAAAATAAAGACTTTTTCACAATGAAAAAAAAAAAAAAAAAA
AAAAAA

hide sequence

RefSeq Acc Id:

XM_017592875 ⟹ XP_017448364

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	152,755,679 - 152,776,867 (+)	NCBI
mRatBN7.2	4	151,083,278 - 151,104,464 (+)	NCBI
Rnor_6.0	4	149,957,244 - 149,978,896 (+)	NCBI

Sequence:

show sequence

TGGGGTTCGGGGAAGGCCAGCCCGCGGTCACGCCGGCTGTGGGAAGGGAAAGTGGGCTCCCCGG
GCTACTGTTTCCGGGTGCTCGGGGCGTGGGCCGAGCGGGGATCGGACCGGGGATCTGGAGGGCT
TCCGGAAGCGCCGTGGGCGCTCGGCAGGCGGGAGTTGAGGACCAGGCCGGCCTCGCGGTTGACT
CGCTCAGCGGAGGCCCCACCGCGAGCGCGCCTGTGGGGGTTTCCATGGTGACAGTAAACAAGCC
TCAACTGCCTCAGCTACAACTGCCAAGTCCCCGGGGTTCCACCCTCCTCTAGGTGCTCTGAGGG
CCGGCGAGGTTCCGGATGTGAGTAGGAGCGTGGAGACGAGAAGCCCGAGGTTGAGAACAAAAAG
AAGATGCACCTGGACTTTCCCCGGAGCCCTCTGCGTTTTTAAGGCGTCGGGTGGAGTTGGGGTT
CGTAAGCCGCGTTCGTTATTGAAAATAGAAGTCACTTCTACCTTCCTCCCGTGGAAAACTTGTT
ATCTTCCATTCTGTGTTTCCTACAGAAGGCATCTGTGGTGGTTCTTTAAGCTACAAAAAATTGC
CCAAGCTTGTGTGACATCAACCCTGTCAAGTGTCCATGATGCTGGGCCCTGAGGGAGGTGAAGG
CTATGTGGTCAAACTCCGTGGCCTACCCTGGTCCTGCTCAATTGAGGACGTACAAAACTTCCTC
TCCGACTGCACAATTCATGATGGGGTCGCAGGTGTTCATTTCATTTATACTAGAGAAGGCAGGC
AGAGTGGTGAGGCTTTTGTTGAACTTGAGTCAGAAGATGATGTAAAATTGGCTCTGAAAAAAGA
CAGGGAAAGCATGGGACACCGGTATATTGAGGTGTTCAAGTCACACAGAACCGAGATGGATTGG
GTGTTGAAGCACAGTGGTCCAAACAGCGCCGACAGTGCCAATGATGGCTTTGTGAGGCTTCGGG
GACTCCCGTTTGGATGCACAAAGGAAGAAATCGTTCAGTTCTTCTCAGGGTTGGAAATTGTGCC
AAACGGGATCACACTACCTGTGGACCCGGAAGGCAAGATTACAGGGGAGGCCTTCGTTCAGTTT
GCCTCACAAGAGTTAGCCGAGAAAGCTTTAGGGAAGCACAAGGAGAGAATAGGGCACAGGTATA
TTGAAGTGTTCAAGAGCAGTCAGGAGGAAGTTAGGTCATACTCAGATCCACCTCTGAAGTTTAT
GTCTGTGCAGAGGCCTGGGCCTTATGACAGGCCTGGCACAGCCCGGAGGTACATTGGCATTGTG
AAACAGGCAGGCCTGGATAGGATGAGGTCTGGTGCCTATAGTGCAGGCTATGGGGGCTATGAAG
AATACAGTGGCCTCAGTGATGGCTATGGCTTCACCACTGACCTGTTTGGGAGAGACCTCAGCTA
TTGTCTCTCAGGAATGTATGATCACAGATACGGAGACAGCGAGTTCACAGTGCAGAGCACCACC
GGCCACTGCGTCCACATGAGAGGGCTGCCCTACAAAGCAACGGAGAACGACATTTACAACTTCT
TCTCTCCACTCAACCCTGTGAGAGTTCATATTGAGATTGGTCCTGATGGAAGAGTGACCGGAGA
AGCTGATGTTGAGTTTGCTACTCATGAAGAAGCAGTGGCAGCTATGTCCAAGGACAGGGCCAAC
ATGCAGCACAGATACATAGAACTCTTCCTGAATTCAACAACAGGAGCTAGCAATGGGGCTTATA
GCAGCCAGGTGATGCAGGGCATGGGTGTGTCAGCTGCCCAGGCAACTTACAGTGGCCTGGAGAG
CCAGTCAGTGAGTGGCTGTTACGGGGCCGGCTACAGCGGTCAGAACAGCATGGGTGGATATGAT
TAGTATTGTAGGAACATTTGGGTTATTTCAATCAGAAAATTTCACAGGCAGCCAATAAACAGTC
AAGAGCAGTTTATAACTCTAGAGGAAGCTGGGGGACCCACTTTGCACCATGAGTTTGTGAAATC
TGGATTAAAAAATTACCTCTTCAGTGTTTCTCATGCAAACTTTTCTTCTAGCATGTAATATTGA
GTAAACTAAAAACTATTTTCTTCCGCTTTTCTCAATTAACATTTTTGGTAGTATACTTAAGAGT
GATGTTATCTGAGTTAAGTAGTTTAAGTATGTTGAGTGGATCTTTCAGCACACCACAGTGAACA
CACTGGGGGCATGTACTTTTCTGGAGAACTCAAGGTGCTAGATCCCTGATGCAAAGAGAAGCAT
TTCTCATGTTCATTCTAGTTTATATTTTCATTTAAAATCTTTAGGTTAAGTTTAAGCTTTTTAA
AAGTTAGTTTTGAGAATTGAGACACAATACTAATACTGTAGGAATTGGTGAGGCCTTGACTTAA
AGCTTTCTTTGTACTGTGATTTCCTTTTGGGTGTATTTTGCTAAGTGAAACTTGTTAAATTTTT
TGTTAACTAAATTTTTTTCTTAAAATAAAGACTTTTTCACAATGA

hide sequence

RefSeq Acc Id:

XM_039108313 ⟹ XP_038964241

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	152,756,169 - 152,776,867 (+)	NCBI
mRatBN7.2	4	151,084,227 - 151,104,464 (+)	NCBI

RefSeq Acc Id:

XM_039108314 ⟹ XP_038964242

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	152,756,611 - 152,776,867 (+)	NCBI
mRatBN7.2	4	151,084,198 - 151,104,464 (+)	NCBI

RefSeq Acc Id:

XM_063286660 ⟹ XP_063142730

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	152,755,686 - 152,776,867 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001032362	(Get FASTA)	NCBI Sequence Viewer
	NP_001032363	(Get FASTA)	NCBI Sequence Viewer
	NP_001032364	(Get FASTA)	NCBI Sequence Viewer
	NP_071792	(Get FASTA)	NCBI Sequence Viewer
	XP_017448364	(Get FASTA)	NCBI Sequence Viewer
	XP_038964241	(Get FASTA)	NCBI Sequence Viewer
	XP_038964242	(Get FASTA)	NCBI Sequence Viewer
	XP_063142730	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH97275	(Get FASTA)	NCBI Sequence Viewer
	AAI03635	(Get FASTA)	NCBI Sequence Viewer
	BAA37095	(Get FASTA)	NCBI Sequence Viewer
	EDM02089	(Get FASTA)	NCBI Sequence Viewer
	EDM02090	(Get FASTA)	NCBI Sequence Viewer
	EDM02091	(Get FASTA)	NCBI Sequence Viewer
	EDM02092	(Get FASTA)	NCBI Sequence Viewer
	EDM02093	(Get FASTA)	NCBI Sequence Viewer
	EDM02094	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000019529.4
	ENSRNOP00000068652.1
	ENSRNOP00000069655.1
	ENSRNOP00000079597.1
	ENSRNOP00000081128.1
	ENSRNOP00000087661.1
	ENSRNOP00055010905
	ENSRNOP00055010906
	ENSRNOP00055010909
	ENSRNOP00055010912
	ENSRNOP00055010915
	ENSRNOP00060038976
	ENSRNOP00060039000
	ENSRNOP00060039010
	ENSRNOP00060039018
	ENSRNOP00060039029
	ENSRNOP00065040467
	ENSRNOP00065040472
	ENSRNOP00065040476
	ENSRNOP00065040477
	ENSRNOP00065040488
GenBank Protein	Q794E4	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001032364 ⟸ NM_001037287

- UniProtKB:

Q794E4 (UniProtKB/Swiss-Prot), A6IL49 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MMLGPEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESE
DDVKLALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIV
QFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVR
SYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLDRMRSGAYSAGYGGYEEYSGLSDGYGFT
TDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIE
IGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGASNGAYSSQVMQGMGVSA
AQATYSGLESQSVSGCYGAGYSGQNSMGGYD

hide sequence

RefSeq Acc Id:

NP_001032362 ⟸ NM_001037285

- UniProtKB:

Q794E4 (UniProtKB/Swiss-Prot), A6IL49 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MMLGPEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESE
DDVKLALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIV
QFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVR
SYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLDRMRSGAYSAGYGGYEEYSGLSDGYGFT
TDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIE
IGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGASNGAYSSQVMQGMGVSA
AQATYSGLESQSVSGCYGAGYSGQNSMGGYD

hide sequence

RefSeq Acc Id:

NP_071792 ⟸ NM_022397

- UniProtKB:

Q794E4 (UniProtKB/Swiss-Prot), A6IL49 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MMLGPEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESE
DDVKLALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIV
QFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVR
SYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLDRMRSGAYSAGYGGYEEYSGLSDGYGFT
TDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIE
IGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGASNGAYSSQVMQGMGVSA
AQATYSGLESQSVSGCYGAGYSGQNSMGGYD

hide sequence

RefSeq Acc Id:

NP_001032363 ⟸ NM_001037286

- UniProtKB:

Q794E4 (UniProtKB/Swiss-Prot), A6IL49 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MMLGPEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESE
DDVKLALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIV
QFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVR
SYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLDRMRSGAYSAGYGGYEEYSGLSDGYGFT
TDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIE
IGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGASNGAYSSQVMQGMGVSA
AQATYSGLESQSVSGCYGAGYSGQNSMGGYD

hide sequence

RefSeq Acc Id:	XP_017448364 ⟸ XM_017592875
- Peptide Label:	isoform X1
- UniProtKB:	Q794E4 (UniProtKB/Swiss-Prot), A6IL49 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMLGPEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESE DDVKLALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIV QFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVR SYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLDRMRSGAYSAGYGGYEEYSGLSDGYGFT TDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIE IGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGASNGAYSSQVMQGMGVSA AQATYSGLESQSVSGCYGAGYSGQNSMGGYD hide sequence

Ensembl Acc Id:

ENSRNOP00000019529 ⟸ ENSRNOT00000019529

Ensembl Acc Id:

ENSRNOP00000068652 ⟸ ENSRNOT00000083843

Ensembl Acc Id:

ENSRNOP00000069655 ⟸ ENSRNOT00000091765

RefSeq Acc Id:	XP_038964242 ⟸ XM_039108314
- Peptide Label:	isoform X1
- UniProtKB:	Q794E4 (UniProtKB/Swiss-Prot), A6IL49 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038964241 ⟸ XM_039108313
- Peptide Label:	isoform X1
- UniProtKB:	Q794E4 (UniProtKB/Swiss-Prot), A6IL49 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000087661 ⟸ ENSRNOT00000108890

Ensembl Acc Id:

ENSRNOP00000081128 ⟸ ENSRNOT00000108423

Ensembl Acc Id:

ENSRNOP00000079597 ⟸ ENSRNOT00000112326

RefSeq Acc Id:	XP_063142730 ⟸ XM_063286660
- Peptide Label:	isoform X1
- UniProtKB:	Q794E4 (UniProtKB/Swiss-Prot), A6IL49 (UniProtKB/TrEMBL)

Protein Domains

RRM

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q794E4-F1-model_v2	AlphaFold	Q794E4	1-415	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693342

Promoter ID:

EPDNEW_R3865

Type:

initiation region

Name:

Hnrnpf_1

Description:

heterogeneous nuclear ribonucleoprotein F

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R3866 EPDNEW_R3867

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	149,957,191 - 149,957,251	EPDNEW

RGD ID:

13693343

Promoter ID:

EPDNEW_R3866

Type:

initiation region

Name:

Hnrnpf_2

Description:

heterogeneous nuclear ribonucleoprotein F

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R3865 EPDNEW_R3867

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	149,970,215 - 149,970,275	EPDNEW

RGD ID:

13693345

Promoter ID:

EPDNEW_R3867

Type:

initiation region

Name:

Hnrnpf_3

Description:

heterogeneous nuclear ribonucleoprotein F

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R3865 EPDNEW_R3866

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	149,970,524 - 149,970,584	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620366	AgrOrtholog
BioCyc Gene	G2FUF-43246	BioCyc
Ensembl Genes	ENSRNOG00000014562	Ensembl, UniProtKB/Swiss-Prot
	ENSRNOG00055008046	UniProtKB/Swiss-Prot
	ENSRNOG00060027004	UniProtKB/Swiss-Prot
	ENSRNOG00065028612	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000019529.7	UniProtKB/Swiss-Prot
	ENSRNOT00000083843.2	UniProtKB/Swiss-Prot
	ENSRNOT00000091765.2	UniProtKB/Swiss-Prot
	ENSRNOT00000108423.1	UniProtKB/Swiss-Prot
	ENSRNOT00000108890.1	UniProtKB/Swiss-Prot
	ENSRNOT00000112326.1	UniProtKB/Swiss-Prot
	ENSRNOT00055013585	UniProtKB/Swiss-Prot
	ENSRNOT00055013586	UniProtKB/Swiss-Prot
	ENSRNOT00055013589	UniProtKB/Swiss-Prot
	ENSRNOT00055013592	UniProtKB/Swiss-Prot
	ENSRNOT00055013595	UniProtKB/Swiss-Prot
	ENSRNOT00060046872	UniProtKB/Swiss-Prot
	ENSRNOT00060046898	UniProtKB/Swiss-Prot
	ENSRNOT00060046911	UniProtKB/Swiss-Prot
	ENSRNOT00060046921	UniProtKB/Swiss-Prot
	ENSRNOT00060046933	UniProtKB/Swiss-Prot
	ENSRNOT00065049336	UniProtKB/Swiss-Prot
	ENSRNOT00065049341	UniProtKB/Swiss-Prot
	ENSRNOT00065049345	UniProtKB/Swiss-Prot
	ENSRNOT00065049346	UniProtKB/Swiss-Prot
	ENSRNOT00065049357	UniProtKB/Swiss-Prot
Gene3D-CATH	3.30.70.330	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7097633	IMAGE-MGC_LOAD
	IMAGE:7444983	IMAGE-MGC_LOAD
InterPro	ESRP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Nucleotide-bd_a/b_plait_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	RBD_domain_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	RRM_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Znf_CHHC	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:64200	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE	MGC:114252	IMAGE-MGC_LOAD
	MGC:125106	IMAGE-MGC_LOAD
NCBI Gene	64200	ENTREZGENE
PANTHER	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN F	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	RRM_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	zf-RNPHF	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Hnrnpf	PhenoGen
PROSITE	RRM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000014562	RatGTEx
	ENSRNOG00055008046	RatGTEx
	ENSRNOG00060027004	RatGTEx
	ENSRNOG00065028612	RatGTEx
SMART	RRM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	RNA-binding domain, RBD	UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
UniProt	A6IL49	ENTREZGENE, UniProtKB/TrEMBL
	HNRPF_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-05-19	Hnrnpf	heterogeneous nuclear ribonucleoprotein F	Hnrpf	heterogeneous nuclear ribonucleoprotein F	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	Hnrpf	heterogeneous nuclear ribonucleoprotein F		ribonucleoprotein F	Name updated	1299863	APPROVED
2002-08-07	Hnrpf	ribonucleoprotein F			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_physical_interaction	interacts with TATA-binding protein in nuclear extracts	632913

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - MGI