HNRNPF (heterogeneous nuclear ribonucleoprotein F) - Rat Genome Database

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Gene: HNRNPF (heterogeneous nuclear ribonucleoprotein F) Homo sapiens
Analyze
Symbol: HNRNPF
Name: heterogeneous nuclear ribonucleoprotein F
RGD ID: 1349083
HGNC Page HGNC:5039
Description: Enables single-stranded RNA binding activity. Involved in regulation of RNA splicing. Located in cytosol and nucleoplasm. Part of catalytic step 2 spliceosome.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: HnRNP F protein; HNRPF; mcs94-1; MGC110997; nucleolin-like protein mcs94-1; OK/SW-cl.23
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381043,385,618 - 43,409,186 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1043,385,617 - 43,409,186 (-)EnsemblGRCh38hg38GRCh38
GRCh371043,881,066 - 43,904,634 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361043,201,071 - 43,224,702 (-)NCBINCBI36Build 36hg18NCBI36
Build 341043,201,070 - 43,224,620NCBI
Celera1039,883,455 - 39,907,087 (-)NCBICelera
Cytogenetic Map10q11.21NCBI
HuRef1040,407,603 - 40,431,235 (-)NCBIHuRef
CHM1_11043,920,400 - 43,944,037 (-)NCBICHM1_1
T2T-CHM13v2.01044,264,607 - 44,288,176 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (EXP)
(Z)-3-butylidenephthalide  (EXP)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (ISO)
2-palmitoylglycerol  (EXP)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (EXP)
5-fluorouracil  (EXP)
6-propyl-2-thiouracil  (ISO)
actinomycin D  (EXP)
Aflatoxin B2 alpha  (EXP)
amitrole  (ISO)
ammonium chloride  (ISO)
antirheumatic drug  (EXP)
Aroclor 1254  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[b]fluoranthene  (ISO)
bisphenol A  (ISO)
bisphenol F  (ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (EXP)
carbon nanotube  (EXP)
CGP 52608  (EXP)
chlorpyrifos  (ISO)
choline  (ISO)
chrysene  (ISO)
cisplatin  (ISO)
cobalt dichloride  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
coumarin  (EXP)
cyclosporin A  (EXP)
DDE  (EXP)
Dibutyl phosphate  (EXP)
doxorubicin  (EXP)
enzyme inhibitor  (EXP)
flutamide  (ISO)
folic acid  (ISO)
FR900359  (EXP)
gentamycin  (ISO)
glyphosate  (ISO)
ivermectin  (EXP)
L-methionine  (ISO)
lovastatin  (ISO)
Mesaconitine  (ISO)
methimazole  (ISO)
nefazodone  (ISO)
nickel atom  (EXP)
Nutlin-3  (EXP)
ochratoxin A  (ISO)
oxaliplatin  (ISO)
ozone  (ISO)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenethyl isothiocyanate  (EXP)
pirinixic acid  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
quinomethionate  (EXP)
SB 431542  (EXP)
silicon dioxide  (EXP)
sodium arsenite  (EXP)
sulfadimethoxine  (ISO)
sulforaphane  (EXP)
tetrachloromethane  (ISO)
tetraphene  (ISO)
thiram  (EXP)
titanium dioxide  (ISO)
topotecan  (ISO)
tributylstannane  (ISO)
trichloroethene  (ISO)
triptonide  (ISO)
trovafloxacin  (ISO)
valproic acid  (EXP)
warfarin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1351868   PMID:7499401   PMID:7512260   PMID:9111328   PMID:9858532   PMID:10456323   PMID:10620016   PMID:11003644   PMID:11054566   PMID:11158309   PMID:11827452   PMID:11991638  
PMID:12226669   PMID:12388589   PMID:12477932   PMID:14702039   PMID:14980514   PMID:15161933   PMID:15164054   PMID:15302935   PMID:15489334   PMID:15592455   PMID:15635413   PMID:16055720  
PMID:16159877   PMID:16196087   PMID:16236267   PMID:16344560   PMID:16385451   PMID:16424007   PMID:16568080   PMID:16713569   PMID:16885237   PMID:17081983   PMID:17220478   PMID:17314511  
PMID:17620599   PMID:17725712   PMID:17932509   PMID:18029348   PMID:18187620   PMID:18247557   PMID:18377426   PMID:18654987   PMID:18781797   PMID:19244236   PMID:19322201   PMID:19394292  
PMID:19454010   PMID:19738201   PMID:19946888   PMID:20308064   PMID:20308327   PMID:20360068   PMID:20467437   PMID:20473970   PMID:20508642   PMID:20526337   PMID:21081503   PMID:21081666  
PMID:21139048   PMID:21145461   PMID:21182205   PMID:21319273   PMID:21516116   PMID:21565611   PMID:21625959   PMID:21853274   PMID:21873635   PMID:21890473   PMID:21900255   PMID:21906983  
PMID:21963094   PMID:21987572   PMID:21988832   PMID:22053931   PMID:22079093   PMID:22132154   PMID:22174317   PMID:22178446   PMID:22268729   PMID:22365833   PMID:22446626   PMID:22505724  
PMID:22586326   PMID:22623428   PMID:22658674   PMID:22681889   PMID:22863883   PMID:22912744   PMID:22939629   PMID:23000965   PMID:23084401   PMID:23125841   PMID:23184937   PMID:23246001  
PMID:23255806   PMID:23438482   PMID:23443559   PMID:23602568   PMID:23798571   PMID:23825951   PMID:23858473   PMID:24189400   PMID:24244333   PMID:24316072   PMID:24332808   PMID:24457600  
PMID:24550385   PMID:24591637   PMID:24654937   PMID:24690621   PMID:24711643   PMID:24816145   PMID:24978456   PMID:24980433   PMID:25015289   PMID:25071155   PMID:25147182   PMID:25169827  
PMID:25192599   PMID:25277244   PMID:25315684   PMID:25324306   PMID:25416956   PMID:25437307   PMID:25515538   PMID:25756610   PMID:25796446   PMID:25798074   PMID:25852190   PMID:25882849  
PMID:25921289   PMID:25959826   PMID:25963833   PMID:26217791   PMID:26288249   PMID:26291670   PMID:26318153   PMID:26344197   PMID:26460568   PMID:26496610   PMID:26627737   PMID:26641092  
PMID:26725010   PMID:26816005   PMID:26831064   PMID:26979993   PMID:27025967   PMID:27320910   PMID:27342126   PMID:27365398   PMID:27462432   PMID:27503909   PMID:27505670   PMID:27545878  
PMID:27557628   PMID:27591049   PMID:27609421   PMID:27684187   PMID:27976729   PMID:28218735   PMID:28302793   PMID:28424160   PMID:28431233   PMID:28443643   PMID:28514442   PMID:28515276  
PMID:28581483   PMID:28611215   PMID:28902428   PMID:28927264   PMID:28973437   PMID:28977470   PMID:28977666   PMID:28986522   PMID:29050934   PMID:29104064   PMID:29117863   PMID:29180619  
PMID:29229926   PMID:29269483   PMID:29298432   PMID:29331416   PMID:29395067   PMID:29467282   PMID:29507755   PMID:29511296   PMID:29676528   PMID:29706618   PMID:29773655   PMID:29773831  
PMID:29777862   PMID:29795372   PMID:29802200   PMID:29844126   PMID:29845934   PMID:29863498   PMID:29884807   PMID:29892012   PMID:29934401   PMID:29955894   PMID:30021884   PMID:30115631  
PMID:30209976   PMID:30312683   PMID:30349055   PMID:30404004   PMID:30462309   PMID:30463901   PMID:30468106   PMID:30575818   PMID:30652415   PMID:30662561   PMID:30804502   PMID:30809309  
PMID:30884312   PMID:30890647   PMID:30940648   PMID:30948266   PMID:31010829   PMID:31048545   PMID:31059266   PMID:31091453   PMID:31180492   PMID:31221586   PMID:31239290   PMID:31253590  
PMID:31403184   PMID:31586073   PMID:31594818   PMID:31665637   PMID:31732153   PMID:31980649   PMID:31980815   PMID:32041737   PMID:32129710   PMID:32152128   PMID:32160526   PMID:32239614  
PMID:32296183   PMID:32344865   PMID:32529326   PMID:32538781   PMID:32552912   PMID:32687490   PMID:32694731   PMID:32698014   PMID:32780723   PMID:32807901   PMID:32814053   PMID:32963011  
PMID:32994395   PMID:33005030   PMID:33022573   PMID:33024031   PMID:33111431   PMID:33239621   PMID:33301849   PMID:33306668   PMID:33349959   PMID:33536335   PMID:33567341   PMID:33644029  
PMID:33658012   PMID:33729478   PMID:33742100   PMID:33766124   PMID:33838681   PMID:33916271   PMID:33961781   PMID:34079125   PMID:34091597   PMID:34185411   PMID:34226595   PMID:34244482  
PMID:34244565   PMID:34316702   PMID:34349018   PMID:34428256   PMID:34462429   PMID:34582376   PMID:34645483   PMID:34650049   PMID:34662580   PMID:34711951   PMID:34728620   PMID:34732716  
PMID:34901782   PMID:35013218   PMID:35063084   PMID:35102251   PMID:35182466   PMID:35198878   PMID:35256949   PMID:35271311   PMID:35338135   PMID:35446349   PMID:35509820   PMID:35546148  
PMID:35563538   PMID:35575683   PMID:35676246   PMID:35676659   PMID:35785414   PMID:35819319   PMID:35831314   PMID:35914814   PMID:35915203   PMID:35944360   PMID:35987950   PMID:36030824  
PMID:36057605   PMID:36114006   PMID:36180527   PMID:36180891   PMID:36199071   PMID:36215168   PMID:36282215   PMID:36373674   PMID:36424410   PMID:36517590   PMID:36526897   PMID:36574265  
PMID:36634849   PMID:36652389   PMID:36912080   PMID:36949045   PMID:36964488   PMID:37039823   PMID:37059091   PMID:37071682   PMID:37117180   PMID:37211047   PMID:37267103   PMID:37314180  
PMID:37314216   PMID:37317656   PMID:37372979   PMID:37399401   PMID:37616343   PMID:37794589   PMID:37827155   PMID:37929963   PMID:38113892   PMID:38172120   PMID:38195017   PMID:38334954  
PMID:38492217   PMID:38496616   PMID:38697112   PMID:38777146   PMID:39066279   PMID:39231216  


Genomics

Comparative Map Data
HNRNPF
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381043,385,618 - 43,409,186 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1043,385,617 - 43,409,186 (-)EnsemblGRCh38hg38GRCh38
GRCh371043,881,066 - 43,904,634 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361043,201,071 - 43,224,702 (-)NCBINCBI36Build 36hg18NCBI36
Build 341043,201,070 - 43,224,620NCBI
Celera1039,883,455 - 39,907,087 (-)NCBICelera
Cytogenetic Map10q11.21NCBI
HuRef1040,407,603 - 40,431,235 (-)NCBIHuRef
CHM1_11043,920,400 - 43,944,037 (-)NCBICHM1_1
T2T-CHM13v2.01044,264,607 - 44,288,176 (-)NCBIT2T-CHM13v2.0
Hnrnpf
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396117,877,301 - 117,902,583 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6117,877,285 - 117,902,583 (+)EnsemblGRCm39 Ensembl
GRCm386117,900,340 - 117,925,622 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6117,900,324 - 117,925,622 (+)EnsemblGRCm38mm10GRCm38
MGSCv376117,850,358 - 117,875,640 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366117,872,436 - 117,891,238 (+)NCBIMGSCv36mm8
Celera6119,720,885 - 119,746,167 (+)NCBICelera
Cytogenetic Map6F1NCBI
cM Map655.66NCBI
Hnrnpf
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84152,755,668 - 152,776,867 (+)NCBIGRCr8
mRatBN7.24151,083,262 - 151,104,464 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4151,083,062 - 151,109,038 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4157,345,624 - 157,366,761 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04153,129,584 - 153,150,719 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04151,752,602 - 151,773,735 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04149,957,143 - 149,978,896 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4149,957,206 - 149,978,895 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04215,886,322 - 215,908,012 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44154,207,198 - 154,228,398 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14154,471,357 - 154,473,232 (+)NCBI
Celera4139,958,784 - 139,979,932 (+)NCBICelera
Cytogenetic Map4q42NCBI
Hnrnpf
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555461,386,186 - 1,401,071 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555461,386,186 - 1,401,071 (-)NCBIChiLan1.0ChiLan1.0
HNRNPF
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2856,108,006 - 56,131,277 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11056,113,335 - 56,136,606 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01040,368,029 - 40,391,406 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11043,548,945 - 43,572,750 (-)NCBIpanpan1.1PanPan1.1panPan2
HNRNPF
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1283,651,685 - 3,672,320 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl283,670,455 - 3,671,699 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha283,884,981 - 3,905,567 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0283,830,441 - 3,851,040 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl283,830,470 - 3,851,057 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1283,627,701 - 3,648,283 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0283,670,843 - 3,691,409 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0283,804,685 - 3,825,327 (+)NCBIUU_Cfam_GSD_1.0
Hnrnpf
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721383,520,630 - 83,542,686 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366173,241,299 - 3,263,318 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HNRNPF
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1461,644,965 - 61,667,940 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11461,646,712 - 61,667,947 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21466,478,356 - 66,498,623 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HNRNPF
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1939,058,238 - 39,083,825 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605647,386,999 - 47,411,260 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hnrnpf
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624922471,853 - 571,678 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624922555,345 - 571,586 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in HNRNPF
12 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh37/hg19 10q11.21(chr10:43796180-44037408)x3 copy number gain VATER association [RCV000521892] Chr10:43796180..44037408 [GRCh37]
Chr10:10q11.21
likely pathogenic
GRCh38/hg38 10q11.21-21.2(chr10:42335305-60284876)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052506]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052506]|See cases [RCV000052506] Chr10:42335305..60284876 [GRCh38]
Chr10:42830753..62044634 [GRCh37]
Chr10:42150759..61714640 [NCBI36]
Chr10:10q11.21-21.2
pathogenic
GRCh38/hg38 10q11.21-21.1(chr10:42884294-52265317)x3 copy number gain See cases [RCV000134381] Chr10:42884294..52265317 [GRCh38]
Chr10:43379742..54025077 [GRCh37]
Chr10:42699748..53695083 [NCBI36]
Chr10:10q11.21-21.1
pathogenic
GRCh38/hg38 10q11.21-11.23(chr10:42395201-50877059)x3 copy number gain See cases [RCV000134846] Chr10:42395201..50877059 [GRCh38]
Chr10:42890649..52636819 [GRCh37]
Chr10:42210655..52306825 [NCBI36]
Chr10:10q11.21-11.23
pathogenic
GRCh38/hg38 10q11.21-22.2(chr10:42685306-73715908)x3 copy number gain See cases [RCV000134848] Chr10:42685306..73715908 [GRCh38]
Chr10:43180754..75475666 [GRCh37]
Chr10:42500760..75145672 [NCBI36]
Chr10:10q11.21-22.2
pathogenic
GRCh38/hg38 10p15.1-q11.22(chr10:4604734-48074662)x3 copy number gain See cases [RCV000141497] Chr10:4604734..48074662 [GRCh38]
Chr10:4646926..47531169 [GRCh37]
Chr10:4636926..47125152 [NCBI36]
Chr10:10p15.1-q11.22
benign
GRCh38/hg38 10q11.21-21.3(chr10:42112187-67400675)x3 copy number gain See cases [RCV000142967] Chr10:42112187..67400675 [GRCh38]
Chr10:42607635..69160433 [GRCh37]
Chr10:41927641..68830439 [NCBI36]
Chr10:10q11.21-21.3
pathogenic
NM_001098204.2(HNRNPF):c.1240T>G (p.Tyr414Asp) single nucleotide variant not specified [RCV004309596] Chr10:43386645 [GRCh38]
Chr10:43882093 [GRCh37]
Chr10:10q11.21
uncertain significance
NC_000010.10:g.43611191_61663279inv inversion Pediatric metastatic thyroid tumour [RCV000585841] Chr10:43611191..61663279 [GRCh37]
Chr10:10q11.21-21.2
likely pathogenic
GRCh37/hg19 10p15.3-q26.3(chr10:93297-135378918)x3 copy number gain See cases [RCV000448750] Chr10:93297..135378918 [GRCh37]
Chr10:10p15.3-q26.3
pathogenic
GRCh37/hg19 10q11.21(chr10:42706947-44489498)x3 copy number gain See cases [RCV000510280] Chr10:42706947..44489498 [GRCh37]
Chr10:10q11.21
uncertain significance
GRCh37/hg19 10p15.3-q26.3(chr10:100027-135427143) copy number gain See cases [RCV000511389] Chr10:100027..135427143 [GRCh37]
Chr10:10p15.3-q26.3
pathogenic|uncertain significance
GRCh37/hg19 10p15.3-q11.23(chr10:100026-50961640)x3 copy number gain See cases [RCV000510893] Chr10:100026..50961640 [GRCh37]
Chr10:10p15.3-q11.23
pathogenic
GRCh37/hg19 10p15.3-q26.3(chr10:100027-135427143)x3 copy number gain See cases [RCV000510861] Chr10:100027..135427143 [GRCh37]
Chr10:10p15.3-q26.3
pathogenic
GRCh37/hg19 10q11.21-26.3(chr10:42347406-135534747)x1 copy number loss Poly (ADP-Ribose) polymerase inhibitor response [RCV000626438] Chr10:42347406..135534747 [GRCh37]
Chr10:10q11.21-26.3
drug response
GRCh37/hg19 10p15.3-q26.3(chr10:73232-135524321)x3 copy number gain not provided [RCV000749464] Chr10:73232..135524321 [GRCh37]
Chr10:10p15.3-q26.3
pathogenic
GRCh37/hg19 10p15.3-q26.3(chr10:98087-135477883)x3 copy number gain not provided [RCV000749465] Chr10:98087..135477883 [GRCh37]
Chr10:10p15.3-q26.3
pathogenic
GRCh37/hg19 10p11.21-q11.22(chr10:37149872-46169876)x3 copy number gain not provided [RCV000762700] Chr10:37149872..46169876 [GRCh37]
Chr10:10p11.21-q11.22
likely pathogenic
NM_001098204.2(HNRNPF):c.635G>C (p.Arg212Pro) single nucleotide variant not provided [RCV002280217] Chr10:43387250 [GRCh38]
Chr10:43882698 [GRCh37]
Chr10:10q11.21
uncertain significance
GRCh37/hg19 10p15.3-q11.22(chr10:135655-47688677)x4 copy number gain Mosaic supernumerary isodicentric chromosome 10 [RCV001825164] Chr10:135655..47688677 [GRCh37]
Chr10:10p15.3-q11.22
not provided
GRCh37/hg19 10q11.21(chr10:43683704-44046611)x3 copy number gain not provided [RCV001829098] Chr10:43683704..44046611 [GRCh37]
Chr10:10q11.21
uncertain significance
GRCh37/hg19 10q11.21(chr10:43683704-44151599) copy number gain not specified [RCV002052869] Chr10:43683704..44151599 [GRCh37]
Chr10:10q11.21
uncertain significance
NM_001098204.2(HNRNPF):c.1106A>G (p.Asn369Ser) single nucleotide variant not specified [RCV004167574] Chr10:43386779 [GRCh38]
Chr10:43882227 [GRCh37]
Chr10:10q11.21
uncertain significance
NM_001098204.2(HNRNPF):c.658A>G (p.Ile220Val) single nucleotide variant not specified [RCV004167082] Chr10:43387227 [GRCh38]
Chr10:43882675 [GRCh37]
Chr10:10q11.21
uncertain significance
NM_001098204.2(HNRNPF):c.719A>G (p.Tyr240Cys) single nucleotide variant not specified [RCV004274729] Chr10:43387166 [GRCh38]
Chr10:43882614 [GRCh37]
Chr10:10q11.21
uncertain significance
GRCh37/hg19 10p14-q26.3(chr10:11138692-135427143) copy number gain Distal trisomy 10q [RCV003319593] Chr10:11138692..135427143 [GRCh37]
Chr10:10p14-q26.3
pathogenic
GRCh37/hg19 10p13-q26.3(chr10:12829206-135427143) copy number loss Distal 10q deletion syndrome [RCV003319583] Chr10:12829206..135427143 [GRCh37]
Chr10:10p13-q26.3
pathogenic
NM_001098204.2(HNRNPF):c.781G>A (p.Gly261Arg) single nucleotide variant not provided [RCV003331493] Chr10:43387104 [GRCh38]
Chr10:43882552 [GRCh37]
Chr10:10q11.21
uncertain significance
GRCh37/hg19 10q11.21-24.2(chr10:42709645-100834951)x3 copy number gain not provided [RCV003484798] Chr10:42709645..100834951 [GRCh37]
Chr10:10q11.21-24.2
pathogenic
NM_001098204.2(HNRNPF):c.45C>T (p.Leu15=) single nucleotide variant not specified [RCV004399797] Chr10:43387840 [GRCh38]
Chr10:43883288 [GRCh37]
Chr10:10q11.21
likely benign
NM_001098204.2(HNRNPF):c.813G>T (p.Met271Ile) single nucleotide variant not specified [RCV004399798] Chr10:43387072 [GRCh38]
Chr10:43882520 [GRCh37]
Chr10:10q11.21
uncertain significance
NM_001098204.2(HNRNPF):c.10G>T (p.Gly4Cys) single nucleotide variant not specified [RCV004399795] Chr10:43387875 [GRCh38]
Chr10:43883323 [GRCh37]
Chr10:10q11.21
uncertain significance
NM_001098204.2(HNRNPF):c.23G>T (p.Gly8Val) single nucleotide variant not specified [RCV004399796] Chr10:43387862 [GRCh38]
Chr10:43883310 [GRCh37]
Chr10:10q11.21
uncertain significance
NM_001098204.2(HNRNPF):c.832G>A (p.Asp278Asn) single nucleotide variant not specified [RCV004632934] Chr10:43387053 [GRCh38]
Chr10:43882501 [GRCh37]
Chr10:10q11.21
uncertain significance
NM_001098204.2(HNRNPF):c.199G>A (p.Val67Ile) single nucleotide variant not specified [RCV004632935] Chr10:43387686 [GRCh38]
Chr10:43883134 [GRCh37]
Chr10:10q11.21
uncertain significance
NM_001098204.2(HNRNPF):c.955A>G (p.Ile319Val) single nucleotide variant not specified [RCV004626230] Chr10:43386930 [GRCh38]
Chr10:43882378 [GRCh37]
Chr10:10q11.21
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1878
Count of miRNA genes:438
Interacting mature miRNAs:477
Transcripts:ENST00000337970, ENST00000356053, ENST00000357065, ENST00000443950, ENST00000477108, ENST00000498176, ENST00000544000
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1643515BW287_HBody Weight QTL 287 (human)2.450.0004Body weightBMI101842411044424110Human
407061653GWAS710629_Htriacylglycerol 56:2 measurement QTL GWAS710629 (human)0.000007blood triglyceride amount (VT:0002644)104339274543392746Human
407360655GWAS1009631_Hplatelet count QTL GWAS1009631 (human)2e-08platelet quantity (VT:0003179)platelet count (CMO:0000029)104338789443387895Human
1300009BW22_HBody weight QTL 22 (human)2.32Body weightbody mass index101842411044424110Human
407232667GWAS881643_Hbone density QTL GWAS881643 (human)1e-48bone mineral mass (VT:0005007)bone mineral density (CMO:0001226)104339170943391710Human
407317448GWAS966424_Hblood urea nitrogen measurement QTL GWAS966424 (human)1e-10blood urea nitrogen measurementblood urea nitrogen level (CMO:0000049)104339375743393758Human

Markers in Region
HNRPF_2089  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371043,881,899 - 43,882,767UniSTSGRCh37
Build 361043,201,905 - 43,202,773RGDNCBI36
Celera1039,884,289 - 39,885,157RGD
HuRef1040,408,437 - 40,409,305UniSTS
SGC35271  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371043,881,855 - 43,882,066UniSTSGRCh37
Build 361043,201,861 - 43,202,072RGDNCBI36
Celera1039,884,245 - 39,884,456RGD
Cytogenetic Map10q11.21UniSTS
HuRef1040,408,393 - 40,408,604UniSTS
GeneMap99-GB4 RH Map10264.64UniSTS
Whitehead-RH Map10317.8UniSTS
NCBI RH Map10591.5UniSTS
RH17918  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371043,881,585 - 43,881,731UniSTSGRCh37
GRCh37142,508,082 - 42,508,228UniSTSGRCh37
Build 36142,280,669 - 42,280,815RGDNCBI36
Celera1039,883,975 - 39,884,121UniSTS
Celera140,790,375 - 40,790,521RGD
Cytogenetic Map10q11.21UniSTS
Cytogenetic Map1p34.2UniSTS
HuRef1040,408,123 - 40,408,269UniSTS
HuRef140,627,700 - 40,627,846UniSTS
GeneMap99-GB4 RH Map10259.25UniSTS
NCBI RH Map10591.5UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2439 2788 2253 4974 1726 2351 6 624 1951 465 2270 7306 6472 53 3734 1 852 1744 1617 175 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001098204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001098205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001098206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001098207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001098208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_004966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB062287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI133166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK001364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK296696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL450326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL512654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL542769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW069399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AX876593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC001432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC004254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC015580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC016736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC106008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR976524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA535143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA594075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA679417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB011453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB049909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KT584876 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L28010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000337970   ⟹   ENSP00000338477
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1043,386,022 - 43,409,166 (-)Ensembl
Ensembl Acc Id: ENST00000356053   ⟹   ENSP00000348345
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1043,385,617 - 43,408,882 (-)Ensembl
Ensembl Acc Id: ENST00000357065   ⟹   ENSP00000349573
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1043,385,617 - 43,407,819 (-)Ensembl
Ensembl Acc Id: ENST00000443950   ⟹   ENSP00000400433
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1043,385,617 - 43,396,831 (-)Ensembl
Ensembl Acc Id: ENST00000477108   ⟹   ENSP00000490768
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1043,387,589 - 43,397,278 (-)Ensembl
Ensembl Acc Id: ENST00000498176
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1043,387,643 - 43,396,817 (-)Ensembl
Ensembl Acc Id: ENST00000544000   ⟹   ENSP00000438061
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1043,385,617 - 43,397,346 (-)Ensembl
Ensembl Acc Id: ENST00000682386   ⟹   ENSP00000507787
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1043,385,618 - 43,409,186 (-)Ensembl
RefSeq Acc Id: NM_001098204   ⟹   NP_001091674
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381043,385,618 - 43,409,186 (-)NCBI
GRCh371043,881,065 - 43,904,696 (-)ENTREZGENE
Build 361043,201,071 - 43,224,702 (-)NCBI Archive
HuRef1040,407,603 - 40,431,235 (-)ENTREZGENE
CHM1_11043,920,400 - 43,944,037 (-)NCBI
T2T-CHM13v2.01044,264,607 - 44,288,176 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001098205   ⟹   NP_001091675
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381043,385,618 - 43,408,857 (-)NCBI
GRCh371043,881,065 - 43,904,696 (-)ENTREZGENE
Build 361043,201,071 - 43,224,338 (-)NCBI Archive
HuRef1040,407,603 - 40,431,235 (-)ENTREZGENE
CHM1_11043,920,400 - 43,943,673 (-)NCBI
T2T-CHM13v2.01044,264,607 - 44,287,847 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001098206   ⟹   NP_001091676
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381043,385,618 - 43,407,778 (-)NCBI
GRCh371043,881,065 - 43,904,696 (-)ENTREZGENE
Build 361043,201,071 - 43,223,305 (-)NCBI Archive
HuRef1040,407,603 - 40,431,235 (-)ENTREZGENE
CHM1_11043,920,400 - 43,942,640 (-)NCBI
T2T-CHM13v2.01044,264,607 - 44,286,768 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001098207   ⟹   NP_001091677
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381043,385,618 - 43,397,277 (-)NCBI
GRCh371043,881,065 - 43,904,696 (-)ENTREZGENE
Build 361043,201,071 - 43,212,800 (-)NCBI Archive
HuRef1040,407,603 - 40,431,235 (-)ENTREZGENE
CHM1_11043,920,400 - 43,932,135 (-)NCBI
T2T-CHM13v2.01044,264,607 - 44,276,266 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001098208   ⟹   NP_001091678
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381043,385,618 - 43,396,770 (-)NCBI
GRCh371043,881,065 - 43,904,696 (-)ENTREZGENE
Build 361043,201,071 - 43,212,285 (-)NCBI Archive
HuRef1040,407,603 - 40,431,235 (-)ENTREZGENE
CHM1_11043,920,400 - 43,931,614 (-)NCBI
T2T-CHM13v2.01044,264,607 - 44,275,759 (-)NCBI
Sequence:
RefSeq Acc Id: NM_004966   ⟹   NP_004957
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381043,385,618 - 43,409,186 (-)NCBI
GRCh371043,881,065 - 43,904,696 (-)ENTREZGENE
Build 361043,201,071 - 43,224,662 (-)NCBI Archive
HuRef1040,407,603 - 40,431,235 (-)ENTREZGENE
CHM1_11043,920,400 - 43,943,997 (-)NCBI
T2T-CHM13v2.01044,264,607 - 44,288,176 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001091674 (Get FASTA)   NCBI Sequence Viewer  
  NP_001091675 (Get FASTA)   NCBI Sequence Viewer  
  NP_001091676 (Get FASTA)   NCBI Sequence Viewer  
  NP_001091677 (Get FASTA)   NCBI Sequence Viewer  
  NP_001091678 (Get FASTA)   NCBI Sequence Viewer  
  NP_004957 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC37584 (Get FASTA)   NCBI Sequence Viewer  
  AAH01432 (Get FASTA)   NCBI Sequence Viewer  
  AAH04254 (Get FASTA)   NCBI Sequence Viewer  
  AAH15580 (Get FASTA)   NCBI Sequence Viewer  
  AAH16736 (Get FASTA)   NCBI Sequence Viewer  
  AAI06009 (Get FASTA)   NCBI Sequence Viewer  
  BAB93470 (Get FASTA)   NCBI Sequence Viewer  
  BAG50896 (Get FASTA)   NCBI Sequence Viewer  
  BAG59290 (Get FASTA)   NCBI Sequence Viewer  
  CAE89345 (Get FASTA)   NCBI Sequence Viewer  
  EAW86595 (Get FASTA)   NCBI Sequence Viewer  
  EAW86596 (Get FASTA)   NCBI Sequence Viewer  
  EAW86597 (Get FASTA)   NCBI Sequence Viewer  
  EAW86598 (Get FASTA)   NCBI Sequence Viewer  
  EAW86599 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000338477
  ENSP00000338477.3
  ENSP00000348345
  ENSP00000348345.3
  ENSP00000349573
  ENSP00000349573.4
  ENSP00000400433
  ENSP00000400433.2
  ENSP00000438061
  ENSP00000438061.1
  ENSP00000490768.1
  ENSP00000507787
  ENSP00000507787.1
GenBank Protein P52597 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001091674   ⟸   NM_001098204
- UniProtKB: Q5T0N2 (UniProtKB/Swiss-Prot),   B3KM84 (UniProtKB/Swiss-Prot),   Q96AU2 (UniProtKB/Swiss-Prot),   P52597 (UniProtKB/Swiss-Prot),   B4DKS8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_004957   ⟸   NM_004966
- UniProtKB: Q5T0N2 (UniProtKB/Swiss-Prot),   B3KM84 (UniProtKB/Swiss-Prot),   Q96AU2 (UniProtKB/Swiss-Prot),   P52597 (UniProtKB/Swiss-Prot),   B4DKS8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001091675   ⟸   NM_001098205
- UniProtKB: Q5T0N2 (UniProtKB/Swiss-Prot),   B3KM84 (UniProtKB/Swiss-Prot),   Q96AU2 (UniProtKB/Swiss-Prot),   P52597 (UniProtKB/Swiss-Prot),   B4DKS8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001091676   ⟸   NM_001098206
- UniProtKB: Q5T0N2 (UniProtKB/Swiss-Prot),   B3KM84 (UniProtKB/Swiss-Prot),   Q96AU2 (UniProtKB/Swiss-Prot),   P52597 (UniProtKB/Swiss-Prot),   B4DKS8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001091677   ⟸   NM_001098207
- UniProtKB: Q5T0N2 (UniProtKB/Swiss-Prot),   B3KM84 (UniProtKB/Swiss-Prot),   Q96AU2 (UniProtKB/Swiss-Prot),   P52597 (UniProtKB/Swiss-Prot),   B4DKS8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001091678   ⟸   NM_001098208
- UniProtKB: Q5T0N2 (UniProtKB/Swiss-Prot),   B3KM84 (UniProtKB/Swiss-Prot),   Q96AU2 (UniProtKB/Swiss-Prot),   P52597 (UniProtKB/Swiss-Prot),   B4DKS8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSP00000490768   ⟸   ENST00000477108
Ensembl Acc Id: ENSP00000438061   ⟸   ENST00000544000
Ensembl Acc Id: ENSP00000338477   ⟸   ENST00000337970
Ensembl Acc Id: ENSP00000400433   ⟸   ENST00000443950
Ensembl Acc Id: ENSP00000348345   ⟸   ENST00000356053
Ensembl Acc Id: ENSP00000349573   ⟸   ENST00000357065
Ensembl Acc Id: ENSP00000507787   ⟸   ENST00000682386
Protein Domains
RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P52597-F1-model_v2 AlphaFold P52597 1-415 view protein structure

Promoters
RGD ID:6787762
Promoter ID:HG_KWN:9247
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:UC009XMI.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361043,202,236 - 43,204,287 (-)MPROMDB
RGD ID:6787760
Promoter ID:HG_KWN:9248
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_001098207,   NM_001098208
Position:
Human AssemblyChrPosition (strand)Source
Build 361043,212,001 - 43,213,047 (-)MPROMDB
RGD ID:6787759
Promoter ID:HG_KWN:9249
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_001098206
Position:
Human AssemblyChrPosition (strand)Source
Build 361043,223,201 - 43,224,152 (-)MPROMDB
RGD ID:6787758
Promoter ID:HG_KWN:9250
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_001098204,   NM_001098205,   NM_004966
Position:
Human AssemblyChrPosition (strand)Source
Build 361043,224,446 - 43,225,647 (-)MPROMDB
RGD ID:7217393
Promoter ID:EPDNEW_H14442
Type:initiation region
Name:HNRNPF_2
Description:heterogeneous nuclear ribonucleoprotein F
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H14443  EPDNEW_H14444  EPDNEW_H14445  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381043,396,767 - 43,396,827EPDNEW
RGD ID:7217395
Promoter ID:EPDNEW_H14443
Type:initiation region
Name:HNRNPF_4
Description:heterogeneous nuclear ribonucleoprotein F
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H14442  EPDNEW_H14444  EPDNEW_H14445  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381043,397,197 - 43,397,257EPDNEW
RGD ID:7217397
Promoter ID:EPDNEW_H14444
Type:initiation region
Name:HNRNPF_1
Description:heterogeneous nuclear ribonucleoprotein F
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H14442  EPDNEW_H14443  EPDNEW_H14445  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381043,407,778 - 43,407,838EPDNEW
RGD ID:7217399
Promoter ID:EPDNEW_H14445
Type:initiation region
Name:HNRNPF_3
Description:heterogeneous nuclear ribonucleoprotein F
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H14442  EPDNEW_H14443  EPDNEW_H14444  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381043,409,182 - 43,409,242EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:5039 AgrOrtholog
COSMIC HNRNPF COSMIC
Ensembl Genes ENSG00000169813 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000337970 ENTREZGENE
  ENST00000337970.7 UniProtKB/Swiss-Prot
  ENST00000356053 ENTREZGENE
  ENST00000356053.7 UniProtKB/Swiss-Prot
  ENST00000357065 ENTREZGENE
  ENST00000357065.8 UniProtKB/Swiss-Prot
  ENST00000443950 ENTREZGENE
  ENST00000443950.6 UniProtKB/Swiss-Prot
  ENST00000477108.5 UniProtKB/TrEMBL
  ENST00000544000 ENTREZGENE
  ENST00000544000.5 UniProtKB/Swiss-Prot
  ENST00000682386 ENTREZGENE
  ENST00000682386.1 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.70.330 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000169813 GTEx
HGNC ID HGNC:5039 ENTREZGENE
Human Proteome Map HNRNPF Human Proteome Map
InterPro ESRP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_CHHC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:3185 UniProtKB/Swiss-Prot
NCBI Gene 3185 ENTREZGENE
OMIM 601037 OMIM
PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN F UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-RNPHF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA162391271 PharmGKB
PROSITE RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1B0GW42_HUMAN UniProtKB/TrEMBL
  B3KM84 ENTREZGENE
  B4DKS8 ENTREZGENE, UniProtKB/TrEMBL
  HNRPF_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
  Q5T0N2 ENTREZGENE
  Q96AU2 ENTREZGENE
UniProt Secondary B3KM84 UniProtKB/Swiss-Prot
  Q5T0N2 UniProtKB/Swiss-Prot
  Q96AU2 UniProtKB/Swiss-Prot