Ndufa9 (NADH:ubiquinone oxidoreductase subunit A9) - Rat Genome Database

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Gene: Ndufa9 (NADH:ubiquinone oxidoreductase subunit A9) Rattus norvegicus
Analyze
Symbol: Ndufa9
Name: NADH:ubiquinone oxidoreductase subunit A9
RGD ID: 1307307
Description: Predicted to enable NADH dehydrogenase activity. Involved in response to glucose. Located in mitochondrion. Human ortholog(s) of this gene implicated in nuclear type mitochondrial complex I deficiency 26. Orthologous to human NDUFA9 (NADH:ubiquinone oxidoreductase subunit A9); PARTICIPATES IN Alzheimer's disease pathway; Huntington's disease pathway; oxidative phosphorylation pathway; INTERACTS WITH (+)-schisandrin B; acrylamide; alloxan.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: CI-39kD; complex I-39kD; LOC362440; NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial; NADH-ubiquinone oxidoreductase 39 kDa subunit; sperm flagella protein 3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24159,659,242 - 159,688,034 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4159,659,242 - 159,688,018 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4165,889,046 - 165,917,811 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.04161,671,953 - 161,700,718 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.04160,305,984 - 160,334,750 (-)NCBIRnor_WKY
Rnor_6.04159,371,263 - 159,399,636 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4159,371,259 - 159,399,634 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04232,213,357 - 232,241,730 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44163,208,781 - 163,237,542 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14163,453,715 - 163,482,444 (-)NCBI
Celera4148,375,437 - 148,404,198 (-)NCBICelera
Cytogenetic Map4q42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Increased enzymatic O-GlcNAcylation of mitochondrial proteins impairs mitochondrial function in cardiac myocytes exposed to high glucose. Hu Y, et al., J Biol Chem. 2009 Jan 2;284(1):547-55. doi: 10.1074/jbc.M808518200. Epub 2008 Nov 12.
4. KEGG: Kyoto Encyclopedia of Genes and Genomes KEGG
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
8. GOA pipeline RGD automated data pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Comprehensive gene review and curation RGD comprehensive gene curation
12. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:8486360   PMID:9878551   PMID:11112787   PMID:12611891   PMID:12865426   PMID:14651853   PMID:17209039   PMID:18396137   PMID:18614015   PMID:21630459   PMID:21700703   PMID:23209302  
PMID:24154540   PMID:27626371   PMID:28985504   PMID:29476059   PMID:29867124   PMID:31536960   PMID:32357304  


Genomics

Comparative Map Data
Ndufa9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24159,659,242 - 159,688,034 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4159,659,242 - 159,688,018 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4165,889,046 - 165,917,811 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.04161,671,953 - 161,700,718 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.04160,305,984 - 160,334,750 (-)NCBIRnor_WKY
Rnor_6.04159,371,263 - 159,399,636 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4159,371,259 - 159,399,634 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04232,213,357 - 232,241,730 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44163,208,781 - 163,237,542 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14163,453,715 - 163,482,444 (-)NCBI
Celera4148,375,437 - 148,404,198 (-)NCBICelera
Cytogenetic Map4q42NCBI
NDUFA9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38124,649,114 - 4,694,317 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl124,649,095 - 4,694,317 (+)EnsemblGRCh38hg38GRCh38
GRCh37124,758,280 - 4,803,483 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36124,628,544 - 4,666,660 (+)NCBINCBI36Build 36hg18NCBI36
Build 34124,628,543 - 4,666,658NCBI
Celera126,380,296 - 6,418,724 (+)NCBICelera
Cytogenetic Map12p13.32NCBI
HuRef124,614,987 - 4,653,417 (+)NCBIHuRef
CHM1_1124,757,905 - 4,796,363 (+)NCBICHM1_1
T2T-CHM13v2.0124,655,954 - 4,701,144 (+)NCBIT2T-CHM13v2.0
Ndufa9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396126,798,826 - 126,826,107 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6126,798,684 - 126,826,099 (-)EnsemblGRCm39 Ensembl
GRCm386126,821,863 - 126,849,144 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6126,821,721 - 126,849,136 (-)EnsemblGRCm38mm10GRCm38
MGSCv376126,771,881 - 126,799,162 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366126,787,574 - 126,814,744 (-)NCBIMGSCv36mm8
Celera6128,499,463 - 128,526,780 (-)NCBICelera
Cytogenetic Map6F3NCBI
Ndufa9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554132,435,775 - 2,475,331 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554132,435,717 - 2,475,158 (+)NCBIChiLan1.0ChiLan1.0
NDUFA9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1124,687,250 - 4,725,669 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl124,687,250 - 4,725,669 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0124,766,608 - 4,811,871 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
NDUFA9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12740,176,090 - 40,217,293 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2740,167,293 - 40,217,190 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha276,464,880 - 6,505,841 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02740,531,582 - 40,572,569 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2740,530,267 - 40,572,846 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12740,420,486 - 40,461,440 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02740,445,623 - 40,486,623 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0275,875,461 - 5,916,457 (+)NCBIUU_Cfam_GSD_1.0
Ndufa9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945104,358,472 - 104,389,516 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366064,794,749 - 4,825,570 (+)EnsemblSpeTri2.0
SpeTri2.0NW_0049366064,794,701 - 4,825,696 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NDUFA9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl565,759,727 - 65,788,646 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1565,760,078 - 65,788,703 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2567,965,977 - 67,994,581 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NDUFA9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1114,679,998 - 4,718,346 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl114,680,053 - 4,721,520 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660633,527,283 - 3,565,365 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ndufa9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248601,703,244 - 1,728,779 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248601,703,972 - 1,729,185 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ndufa9
68 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:47
Count of miRNA genes:47
Interacting mature miRNAs:47
Transcripts:ENSRNOT00000037176
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)483428419177635233Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)485379421167139601Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)493308457167139447Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4109866907167139601Rat
1331759Hrtrt13Heart rate QTL 133.54628heart pumping trait (VT:2000009)heart rate (CMO:0000002)4110275411168266883Rat
724535Cm18Cardiac mass QTL 182.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)4118856416163856416Rat
634347Hcar8Hepatocarcinoma resistance QTL 85.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)4123143783168143783Rat
631683Bp116Blood pressure QTL 1160.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4124303370169303370Rat
6478778Anxrr51Anxiety related response QTL 510.25384locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4124778595169778595Rat
7411558Bw133Body weight QTL 13313.840.001body mass (VT:0001259)body weight gain (CMO:0000420)4125590636170590636Rat
61451Ciaa4CIA Autoantibody QTL 43.1blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)4126395976167139601Rat
737978Pia23Pristane induced arthritis QTL 235.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4131730738167139601Rat
631511Pia7Pristane induced arthritis QTL 74.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4131730738167139601Rat
1549827Scl46Serum cholesterol level QTL 463.5blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)4132396220177396220Rat
724558Plsm2Polydactyly-luxate syndrome (PLS) morphotypes QTL 20.0003hindlimb integrity trait (VT:0010563)hind foot phalanges count (CMO:0001949)4132422778177422778Rat
61422Cia13Collagen induced arthritis QTL 134.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4132642577167139601Rat
2303623Vencon2Ventilatory control QTL 23.8respiration trait (VT:0001943)minute ventilation (CMO:0000132)4135204660180204660Rat
1578674Bmd12Bone mineral density QTL 123.8femur mineral mass (VT:0010011)cortical volumetric bone mineral density (CMO:0001730)4135699135180699135Rat
2293659Bmd35Bone mineral density QTL 354.50.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)4137755016181392681Rat
61362Oia2Oil induced arthritis QTL 20.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4138503169173369699Rat
1298524Oia8Oil induced arthritis QTL 8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4138503169173369699Rat
1331738Bp209Blood pressure QTL 2092.979arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)4138503169179293946Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4144639524182687754Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4144639524182687754Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4145568712182687754Rat
634342Cia24Collagen induced arthritis QTL 244.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4146565735175236377Rat
12798525Anxrr57Anxiety related response QTL 573.210.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4147278504167139601Rat
1582237Kidm34Kidney mass QTL 3440.0001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)4148090542168069246Rat
10053718Scort25Serum corticosterone level QTL 252.150.0097blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)4155561574182687754Rat
1300109Rf13Renal function QTL 133.91renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)4157710145182687754Rat

Markers in Region
RH140103  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24159,688,953 - 159,689,167 (+)MAPPERmRatBN7.2
Rnor_6.04159,400,562 - 159,400,775NCBIRnor6.0
Rnor_5.04232,212,218 - 232,212,431UniSTSRnor5.0
RGSC_v3.44163,238,483 - 163,238,696UniSTSRGSC3.4
Celera4148,405,139 - 148,405,352UniSTS
RH 3.4 Map41009.6UniSTS
Cytogenetic Map4q42UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001100752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006237500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC091192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC168777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000089193   ⟹   ENSRNOP00000072757
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4159,659,244 - 159,688,018 (-)Ensembl
Rnor_6.0 Ensembl4159,371,259 - 159,399,634 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000097650   ⟹   ENSRNOP00000085680
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4159,659,242 - 159,688,016 (-)Ensembl
RefSeq Acc Id: NM_001100752   ⟹   NP_001094222
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24159,659,248 - 159,688,013 (-)NCBI
Rnor_6.04159,371,269 - 159,399,621 (-)NCBI
Rnor_5.04232,213,357 - 232,241,730 (+)NCBI
RGSC_v3.44163,208,781 - 163,237,542 (-)RGD
Celera4148,375,437 - 148,404,198 (-)RGD
Sequence:
RefSeq Acc Id: XM_006237500   ⟹   XP_006237562
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24159,659,242 - 159,688,034 (-)NCBI
Rnor_6.04159,371,263 - 159,399,636 (-)NCBI
Rnor_5.04232,213,357 - 232,241,730 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001094222 (Get FASTA)   NCBI Sequence Viewer  
  XP_006237562 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH91192 (Get FASTA)   NCBI Sequence Viewer  
  AAI68777 (Get FASTA)   NCBI Sequence Viewer  
  EDM01826 (Get FASTA)   NCBI Sequence Viewer  
  Q5BK63 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001094222   ⟸   NM_001100752
- UniProtKB: B5DER7 (UniProtKB/Swiss-Prot),   Q5BK63 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006237562   ⟸   XM_006237500
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000072757   ⟸   ENSRNOT00000089193
RefSeq Acc Id: ENSRNOP00000085680   ⟸   ENSRNOT00000097650
Protein Domains
NmrA

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5BK63-F1-model_v2 AlphaFold Q5BK63 1-377 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693416
Promoter ID:EPDNEW_R3941
Type:multiple initiation site
Name:Ndufa9_1
Description:NADH:ubiquinone oxidoreductase subunit A9
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04159,399,621 - 159,399,681EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307307 AgrOrtholog
BioCyc Gene G2FUF-42961 BioCyc
BioCyc Pathway PWY-3781 [aerobic respiration I (cytochrome c)] BioCyc
Ensembl Genes ENSRNOG00000061684 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000072757 ENTREZGENE
  ENSRNOP00000072757.2 UniProtKB/TrEMBL
  ENSRNOP00000085680 ENTREZGENE
  ENSRNOP00000085680.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000089193 ENTREZGENE
  ENSRNOT00000089193.2 UniProtKB/TrEMBL
  ENSRNOT00000097650 ENTREZGENE
  ENSRNOT00000097650.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7372074 IMAGE-MGC_LOAD
InterPro NAD(P)-bd_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NmrA-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:362440 UniProtKB/Swiss-Prot
MGC_CLONE MGC:108862 IMAGE-MGC_LOAD
NCBI Gene 362440 ENTREZGENE
Pfam NmrA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ndufa9 PhenoGen
Superfamily-SCOP SSF51735 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6A3W0_RAT UniProtKB/TrEMBL
  A0A8L2R6R3_RAT UniProtKB/TrEMBL
  B5DER7 ENTREZGENE
  NDUA9_RAT UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary B5DER7 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-05-12 Ndufa9  NADH:ubiquinone oxidoreductase subunit A9  Ndufa9  NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Ndufa9  NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9  Ndufa9_predicted  NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Ndufa9_predicted  NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9 (predicted)      Symbol and Name status set to approved 70820 APPROVED