D4Rat207 Marker Search Result - Rat Genome Database

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Marker: D4Rat207

Symbol: D4Rat207
Previously known as: oxsts10928; R0228-B05; 
RGD ID: 40154
Expected Size: 178 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr84183,631,985 - 183,632,163 (+)Marker Load Pipeline
mRatBN7.24181,900,635 - 181,900,813 (-)MAPPERmRatBN7.2
mRatBN7.24181,900,635 - 181,900,813 (+)MAPPERmRatBN7.2
Rnor_6.01618,445,430 - 18,445,607NCBIRnor6.0
Rnor_6.04183,414,218 - 183,414,395NCBIRnor6.0
Rnor_5.01618,323,079 - 18,323,256UniSTSRnor5.0
Rnor_5.04247,544,444 - 247,544,621UniSTSRnor5.0
Celera4170,368,814 - 170,368,991UniSTS
RH 3.4 Map41118.2RGD
RH 3.4 Map41118.2UniSTS
RH 2.0 Map41151.5RGD
SHRSP x BN Map498.8499RGD
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  
Genes:   Sinhcaf   LOC100909791  


Annotation


#
Reference Title
Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8


 
Forward Primer GACAGAGAATGTGTGGACCAAA
Reverse Primer CCTCCACCCCCATTTATTTC
 
Template 
TAGAGGATCCCCCTCAATGCTAGCCCTTCCTCTCCTCCCAGCACTCCCTCACAAAAGTCCTCCC
TCATCCCCCTTTCCTCTTCTCTTTTGAGAAGCCCCCCTCTGGATGTCAACCCCTCCACCCCCAT
TTATTTCTAAAATAAAATAAGGATGGTTCTGTGGTTTTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTACACAAAGGAAGTTGTCCTTTTTTCTTGCTTTGTATGATGCCTTTGTGGTAATTAG
TAGTTTGGTCCACACATTCTCTGTCTGGTTGGTCCATTGGGGTTTAAGTGTTTATTATCCTTCC
ACCTTCACCCACCCTTTTTTAATGAATGGTCTCACTTGGCAGACCAGAATGACCTTGAAGTCAC
AGCAGTCCTCCTGCCTCAGGGGTACCGAGCTCGAATTCGTAATCATGGTCATAGCTGTTTCCTG
TGTGAAATTGTTATCCGCTCACAATTCCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGC
CTGGGGTGCTAATGAG
Strain, Expected Size(s)

ACI/N 180 AVN/Orl 166 BBDP/Rhw 166
BBDR/Rhw 166 BC/CpbU 180 BDIX/Han 178
BDVII/Cub 180 BN-Lx/Cub 178 BN/SsNHsd 178
BUF/Pit 180 COP/OlaHsd 180 DA/PitN 178
DON/Melb 184 F344/Pit 184 FHH/Eur 180
GH/Omr 178 GK/KyoSwe 152 IS/Kyo 186
LE/Mol 170 LEW/Pit 166 LH/Mav 184
LN/Mav 182 LOU/CHan 176 M520/N 184
MHS/Gib 166 MNR/N 176 MNRA/N 180
MNS/Gib 166 MR/Pit 176 NEDH/K 158
NP9 166 ODU/N 166 OKA/Wsl 166
OM/Ztm 178 P5C 166 PVG/Pit 166
SD/Rij 180 SHR/OlaHsd 166 SHRSP/Riv 166
SR/Jr 182 SS/Jr 184 WAG/RijKyo 180
WF/Pit 166 WIST/Nhg 180 WKY/OlaHsd 166
WN/N 166 WTC/Kyo 166


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1595037SinhcafSIN3-HDAC complex associated factor4181888301181913294Rat
GenBank Nucleotide JH614883.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4144639524182687754Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4144639524182687754Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4145568712182687754Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
1300109Rf13Renal function QTL 133.91renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)4157710145182687754Rat
10053718Scort25Serum corticosterone level QTL 252.150.0097blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)4155561574182687754Rat



Database
Acc Id
Source(s)
NCBI Gene 100909791 UniSTS
  686611 UniSTS