Strap (serine/threonine kinase receptor associated protein)

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Gene: Strap (serine/threonine kinase receptor associated protein) Rattus norvegicus

Analyze

Symbol:

Strap

Name:

serine/threonine kinase receptor associated protein

RGD ID:

1311114

Description:

Predicted to have U2 snRNP binding activity; mRNA binding activity; and signaling receptor binding activity. Predicted to be involved in several processes, including mRNA splicing, via spliceosome; maintenance of gastrointestinal epithelium; and negative regulation of transmembrane receptor protein serine/threonine kinase signaling pathway. Predicted to localize to SMN complex; cytosol; and nucleus. Human ortholog(s) of this gene implicated in adenocarcinoma; colorectal carcinoma; large cell carcinoma; lung carcinoma; and squamous cell neoplasm. Orthologous to human STRAP (serine/threonine kinase receptor associated protein); PARTICIPATES IN transforming growth factor-beta Smad dependent signaling pathway; RNA transport pathway; INTERACTS WITH (+)-schisandrin B; bisphenol A; chloroquine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

LOC100910575; LOC297699; serine-threonine kinase receptor-associated protein; serine-threonine kinase receptor-associated protein-like; UNR-interacting protein

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	4	170,646,042 - 170,660,291 (+)	NCBI
Rnor_6.0 Ensembl	4	171,730,635 - 171,745,377 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	4	171,730,629 - 171,744,877 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	4	235,987,501 - 236,001,749 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	174,863,502 - 174,877,750 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	4	175,108,625 - 175,122,869 (+)	NCBI
Celera	4	159,222,263 - 159,236,511 (+)	NCBI		Celera
Cytogenetic Map	4	q44	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

adenocarcinoma (ISO)

colorectal carcinoma (ISO)

Colorectal Neoplasms (ISO)

large cell carcinoma (ISO)

lung carcinoma (ISO)

squamous cell neoplasm (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

Aroclor 1254 (ISO)

arsenous acid (ISO)

benzene (ISO)

bisphenol A (EXP,ISO)

carbon nanotube (ISO)

chloropicrin (ISO)

chloroquine (EXP)

chromium(6+) (ISO)

copper atom (ISO)

copper(0) (ISO)

CU-O LINKAGE (ISO)

cyclosporin A (ISO)

diarsenic trioxide (ISO)

dibutyl phthalate (EXP,ISO)

dioxygen (ISO)

doxorubicin (ISO)

enzyme inhibitor (ISO)

flutamide (EXP)

folic acid (ISO)

hydrazine (ISO)

josamycin (ISO)

menadione (ISO)

nefazodone (EXP)

paracetamol (ISO)

perfluorooctanoic acid (ISO)

phenobarbital (ISO)

pirinixic acid (ISO)

propiconazole (ISO)

tamoxifen (ISO)

tetrachloromethane (EXP)

trichostatin A (ISO)

trimellitic anhydride (ISO)

vinclozolin (EXP)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

alternative mRNA splicing, via spliceosome (ISO)

anatomical structure development (ISO)

maintenance of gastrointestinal epithelium (ISO)

negative regulation of epithelial cell migration (ISO)

negative regulation of epithelial cell proliferation (ISO)

negative regulation of epithelial to mesenchymal transition (ISO)

negative regulation of pathway-restricted SMAD protein phosphorylation (ISO)

negative regulation of transcription by RNA polymerase II (ISO)

negative regulation of transforming growth factor beta receptor signaling pathway (ISO)

neuron differentiation (ISO)

ribonucleoprotein complex assembly (ISO)

spliceosomal snRNP assembly (IBA,ISO,ISS)

Cellular Component

cytoplasm (ISO)

cytosol (ISO,ISS)

nucleus (ISO)

SMN complex (IBA,ISO,ISS)

SMN-Sm protein complex (ISO,ISS)

Molecular Function

mRNA binding (ISO)

protein binding (ISO)

RNA binding (IBA)

signaling receptor binding (ISO)

U2 snRNP binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

RNA transport pathway (IEA)

transforming growth factor-beta Smad dependent signaling pathway (ISO)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Halder SK, etal., Cancer Res. 2006 Jun 15;66(12):6156-66.
3.	Lisinski I, etal., Biochem Biophys Res Commun. 2006 Jun 16;344(4):1179-85. Epub 2006 Apr 21.
4.	MGD data from the GO Consortium
5.	Pipeline to import KEGG annotations from KEGG into RGD
6.	Pipeline to import Pathway Interaction Database annotations from NCI into RGD
7.	RGD automated data pipeline
8.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:9856985	PMID:12477932	PMID:17929853	PMID:18984161	PMID:20513430	PMID:22658674	PMID:22681889	PMID:23687415	PMID:24577865	PMID:25931508	PMID:32373981

Genomics

Comparative Map Data

Strap
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	4	170,646,042 - 170,660,291 (+)	NCBI
Rnor_6.0 Ensembl	4	171,730,635 - 171,745,377 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	4	171,730,629 - 171,744,877 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	4	235,987,501 - 236,001,749 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	174,863,502 - 174,877,750 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	4	175,108,625 - 175,122,869 (+)	NCBI
Celera	4	159,222,263 - 159,236,511 (+)	NCBI		Celera
Cytogenetic Map	4	q44	NCBI

STRAP
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	12	15,882,387 - 15,903,478 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	12	15,882,382 - 15,903,478 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	12	16,035,321 - 16,056,412 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	15,926,555 - 15,947,679 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	12	15,926,612 - 15,947,675	NCBI
Celera	12	21,180,201 - 21,201,326 (+)	NCBI
Cytogenetic Map	12	p12.3	NCBI
HuRef	12	15,804,489 - 15,825,615 (+)	NCBI		HuRef
CHM1_1	12	16,001,228 - 16,022,353 (+)	NCBI		CHM1_1

Strap
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	137,712,080 - 137,728,928 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	6	137,712,076 - 137,728,930 (+)	Ensembl
GRCm38	6	137,735,082 - 137,751,930 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	137,735,078 - 137,751,932 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	137,683,603 - 137,700,451 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	6	137,699,320 - 137,715,292 (+)	NCBI			mm8
Celera	6	140,801,022 - 140,817,874 (+)	NCBI		Celera
Cytogenetic Map	6	G1	NCBI

Strap
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955413	12,533,423 - 12,559,288 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955413	12,533,422 - 12,558,138 (+)	NCBI	ChiLan1.0	ChiLan1.0

STRAP
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	12	16,279,134 - 16,302,212 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	16,279,956 - 16,300,746 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	12	15,883,512 - 15,904,778 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

STRAP
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	30,800,853 - 30,817,578 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	30,675,247 - 30,817,388 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	15,630,425 - 15,647,595 (+)	NCBI
ROS_Cfam_1.0	27	31,120,261 - 31,137,477 (-)	NCBI
UMICH_Zoey_3.1	27	31,010,663 - 31,027,845 (-)	NCBI
UNSW_CanFamBas_1.0	27	30,965,417 - 30,982,600 (-)	NCBI
UU_Cfam_GSD_1.0	27	15,352,698 - 15,369,898 (+)	NCBI

LOC101973836
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	91,950,994 - 91,972,959 (-)	NCBI
SpeTri2.0	NW_004936587	1,679,570 - 1,700,610 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

STRAP
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	56,717,200 - 56,736,862 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	56,717,196 - 56,736,889 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	60,006,576 - 60,026,251 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LOC103218694
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	15,790,449 - 15,812,964 (+)	NCBI
ChlSab1.1 Ensembl	11	15,790,798 - 15,813,585 (+)	Ensembl

Strap
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624752	22,143,774 - 22,170,164 (-)	NCBI

Position Markers

RH140463

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	4	171,744,721 - 171,744,834	NCBI	Rnor6.0
Rnor_5.0	4	236,001,593 - 236,001,706	UniSTS	Rnor5.0
RGSC_v3.4	4	174,877,594 - 174,877,707	UniSTS	RGSC3.4
Celera	4	159,236,355 - 159,236,468	UniSTS
RH 3.4 Map	4	1024.9	UniSTS
Cytogenetic Map	4	q44	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	7850904	182171018	Rat
1576316	Ept5	Estrogen-induced pituitary tumorigenesis QTL 5	3.8		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	4	84475257	178931073	Rat
1358364	Sradr4	Stress Responsive Adrenal Weight QTL 4	4.92		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	4	128602727	173602727	Rat
724558	Plsm2	Polydactyly-luxate syndrome (PLS) morphotypes QTL 2		0.0003	hindlimb integrity trait (VT:0010563)	hind foot phalanges count (CMO:0001949)	4	131834282	176834282	Rat
1549827	Scl46	Serum cholesterol level QTL 46	3.5		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	4	131864442	176864442	Rat
2303623	Vencon2	Ventilatory control QTL 2	3.8		respiration trait (VT:0001943)	minute ventilation (VE) (CMO:0000132)	4	134917642	179917642	Rat
61362	Oia2	Oil induced arthritis QTL 2		0.001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	136351734	174694858	Rat
1298524	Oia8	Oil induced arthritis QTL 8			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	136351734	174694858	Rat
1331738	Bp209	Blood pressure QTL 209	2.979		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	136351734	180689124	Rat
2293659	Bmd35	Bone mineral density QTL 35	4.5	0.0001	femur strength trait (VT:0010010)	femoral neck ultimate force (CMO:0001703)	4	136908430	182878540	Rat
1578674	Bmd12	Bone mineral density QTL 12	3.8		femur mineral mass (VT:0010011)	cortical volumetric bone mineral density (CMO:0001730)	4	137171018	182171018	Rat
634342	Cia24	Collagen induced arthritis QTL 24	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	145373934	176509907	Rat
6478693	Anxrr32	Anxiety related response QTL 32		0.00092	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	4	145547014	184226339	Rat
6478700	Anxrr33	Anxiety related response QTL 33		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	145547014	184226339	Rat
6478718	Anxrr34	Anxiety related response QTL 34		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	145547014	184226339	Rat
6478748	Anxrr42	Anxiety related response QTL 42		0.28008	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	145547014	184226339	Rat
6478754	Anxrr43	Anxiety related response QTL 43		0.14035	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	145547014	184226339	Rat
10401796	Kidm48	Kidney mass QTL 48			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	4	146497452	184226339	Rat
6478782	Anxrr52	Anxiety related response QTL 52		0.02091	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155386197	184226339	Rat
6478785	Anxrr53	Anxiety related response QTL 53		0.01397	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155386197	184226339	Rat
6478720	Alc23	Alcohol consumption QTL 23		0.00509	drinking behavior trait (VT:0001422)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	155386197	184226339	Rat
6478728	Anxrr36	Anxiety related response QTL 36		0.01061	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155386197	184226339	Rat
6478733	Anxrr37	Anxiety related response QTL 37		0.00095	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155386197	184226339	Rat
6478737	Anxrr38	Anxiety related response QTL 38		0.00159	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155386197	184226339	Rat
6478757	Anxrr44	Anxiety related response QTL 44		0.01087	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155386197	184226339	Rat
10053718	Scort25	Serum corticosterone level QTL 25	2.15	0.0097	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	156855449	184226339	Rat
1300109	Rf13	Renal function QTL 13	3.91		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	4	157423126	184226339	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	281
Count of miRNA genes:	181
Interacting mature miRNAs:	199
Transcripts:	ENSRNOT00000009923
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	43	57	41	19	41	8	11	74	35	41	11	8
Low
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001011969	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC083714	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473964	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000151	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000009923 ⟹ ENSRNOP00000009923

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	4	171,730,635 - 171,745,377 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000074673 ⟹ ENSRNOP00000067434

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	4	173,115,125 - 173,124,562 (+)	Ensembl

RefSeq Acc Id:

NM_001011969 ⟹ NP_001011969

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	170,646,042 - 170,660,291 (+)	NCBI
Rnor_6.0	4	171,730,629 - 171,744,877 (+)	NCBI
Rnor_5.0	4	235,987,501 - 236,001,749 (+)	NCBI
RGSC_v3.4	4	174,863,502 - 174,877,750 (+)	RGD
Celera	4	159,222,263 - 159,236,511 (+)	RGD

Sequence:

show sequence

TGAGTGGCGGCGGGCCGGTTTTCCGGCGCTCCCCTCCCCTTCTCCCTCCCTCCCTGTCCCTCCC
TTGGCGACCGCGCGTCGCGGGGATTCCCGACCCGGCCTCGGCGTGAGTGCGGGGGCCTTAAGCA
GCTGAGGCGCCGCGGCAGAGAAGGAAGAGGACCGCGACCCTCGGTCCCCGCTCCGCGTCACCGC
GCTCGCCGCCGCCATGGCCATGAGGCAGACGCCGCTCACTTGCTCGGGCCACACGCGGCCCGTG
GTGGATTTGGCCTTCAGCGGCATCACGCCTTACGGCTACTTTCTGATCAGCGCTTGCAAAGATG
GCAAACCTATGCTCCGCCAGGGAGATACAGGAGACTGGATCGGAACATTTTTGGGTCATAAAGG
TGCTGTTTGGGGTGCAACATTGAATAAGGACGCCACCAAAGCTGCCACAGCAGCTGCAGACTTC
ACAGCCAAAGTGTGGGACGCTGTCTCTGGAGATGAACTGATGACCCTGGCTCACAAGCACATCG
TCAAGACCGTGGATTTCACACAGGATAGCAATTACCTGTTGACTGGAGGACAGGACAAACTGCT
GCGCATATACGACTTGAACAAACCTGAAGCAGAACCCAAGGAAATTAGTGGTCACACGTCCGGT
ATTAAAAAGGCTCTGTGGTGCAGTGAGGATAAACAGATCCTTTCAGCTGATGATAAAACTGTTC
GGCTCTGGGATCATGCCACAATGACAGAAGTAAAATCTCTAAATTTTAATATGTCTGTTAGCAG
CATGGAATATATTCCTGAGGGAGAGATCTTGGTCATTACTTATGGGCGATCCATTGCTTTTCAT
AGTGCAGTAAGTCTGGAGCCAATTAAATCCTTTGAAGCTCCTGCAACCATCAATTCTGCATCTC
TTCATCCTGAGAAGGAATTTCTTGTTGCTGGTGGAGAAGACTTTAAACTGTATAAGTATGATTA
TAATAGTGGAGAGGAATTAGAATCCTACAAAGGTCACTTTGGCCCCATTCACTGTGTGAGATTC
AGTCCCGATGGTGAACTCTATGCCAGTGGTTCTGAAGATGGGACACTGAGATTGTGGCAAACTG
TGGTTGGAAAGACCTACGGCCTGTGGAAATGCGTGCTTCCTGAGGAAGATAGCGGGGAACTGGC
AAAGCCAAAGATCGGATTTCCAGAAACAGCAGAAGAAGAGCTGGAAGAGATTGCTTCAGAGAAT
TCAGATTCCATCTATTCGTCAACTCCTGAAGTGAAGGCCTGAGCAGCGTCAGACGTGTGCCGCA
GATGCCATGCAGTTGATGGACTGAACAAGCAGAGACCGGCATCGGCCTTCAGTTACTCTGCCTG
TGGCAAAGGGGACAGACTGTTGGGGCATGGATTGCTCCAGTGCACGAACCACTACAGTGTTGCC
TGTGAGGGAACTGGCTGAGCGTGCGGTGCAGGCAGGAGGAGTCTGTTCACCTAGTGCCTGCCAA
AGCCTGCTGCCGTGATGAAAAGCCAACTTAGTGTCCACTTTACCCCAGATCTCCTGTAGCTGTT
TCTGTCATGGAGAAGAAAAATATATTGGCCTATTTTTCTGACATTTCCCTTGAAGAATGCCTTT
TTTTCTCTGCTTAGTTGTGAAGAAGAGGAAATACATGATAAAGTAACTGGTTTGATCTCTTTCA
TTGTACACTGACGGCTTCTGGACATCTAATTTTTTAGTTATCTAAATAAAATGCCTCTAAAACA
ATAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001011969	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH83714	(Get FASTA)	NCBI Sequence Viewer
	EDM01582	(Get FASTA)	NCBI Sequence Viewer
	Q5XIG8	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001011969 ⟸ NM_001011969

- UniProtKB:

Q5XIG8 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWG
ATLNKDATKAATAAADFTAKVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQDKLLRIYD
LNKPEAEPKEISGHTSGIKKALWCSEDKQILSADDKTVRLWDHATMTEVKSLNFNMSVSSMEYI
PEGEILVITYGRSIAFHSAVSLEPIKSFEAPATINSASLHPEKEFLVAGGEDFKLYKYDYNSGE
ELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQTVVGKTYGLWKCVLPEEDSGELAKPKI
GFPETAEEELEEIASENSDSIYSSTPEVKA

hide sequence

RefSeq Acc Id:

ENSRNOP00000009923 ⟸ ENSRNOT00000009923

RefSeq Acc Id:

ENSRNOP00000067434 ⟸ ENSRNOT00000074673

Protein Domains

WD_REPEATS_REGION

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311114	AgrOrtholog
	RGD:6498120	AgrOrtholog
Ensembl Genes	ENSRNOG00000007134	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOG00000048985	Ensembl, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000009923	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOP00000067434	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000009923	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOT00000074673	UniProtKB/TrEMBL
Gene3D-CATH	2.130.10.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7190676	IMAGE-MGC_LOAD
InterPro	G-protein_beta_WD-40_rep	UniProtKB/Swiss-Prot
	WD40/YVTN_repeat-like_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	WD40_repeat	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	WD40_repeat_CS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	WD40_repeat_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	WD40_repeat_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:297699	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94605	IMAGE-MGC_LOAD
NCBI Gene	297699	ENTREZGENE
Pfam	WD40	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Strap	PhenoGen
PRINTS	GPROTEINBRPT	UniProtKB/Swiss-Prot
PROSITE	WD_REPEATS_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	WD_REPEATS_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	WD_REPEATS_REGION	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	WD40	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF50978	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	M0RCV0_RAT	UniProtKB/TrEMBL
	Q5XIG8	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Strap	serine/threonine kinase receptor associated protein	LOC100910575	serine-threonine kinase receptor-associated protein-like	Data Merged	737654	PROVISIONAL
2012-07-05	LOC100910575	serine-threonine kinase receptor-associated protein-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2005-12-06	Strap	serine/threonine kinase receptor associated protein	Strap_predicted	serine/threonine kinase receptor associated protein (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Strap_predicted	serine/threonine kinase receptor associated protein (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)

Imported Annotations - PID (archival)

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Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)

Imported Annotations - PID (archival)