Stk38l (serine/threonine kinase 38 like) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Stk38l (serine/threonine kinase 38 like) Rattus norvegicus
Analyze
Symbol: Stk38l
Name: serine/threonine kinase 38 like
RGD ID: 1564793
Description: Predicted to enable ATP binding activity; magnesium ion binding activity; and protein serine/threonine kinase activity. Predicted to be involved in intracellular signal transduction; peptidyl-serine phosphorylation; and regulation of cellular component organization. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in actin cytoskeleton and cytosol. Orthologous to human STK38L (serine/threonine kinase 38 like); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; dibutyl phthalate.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC500365; LOC691337; RGD1564793; serine/threonine kinase 38-like; serine/threonine-protein kinase 38-like; similar to KIAA0965 protein; similar to putative serine/threonine kinase NDR54
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24179,616,288 - 179,693,177 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl4179,634,275 - 179,690,983 (+)Ensembl
Rnor_6.04181,027,212 - 181,089,735 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4181,027,212 - 181,089,740 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04245,213,201 - 245,245,025 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44184,316,579 - 184,392,709 (+)NCBIRGSC3.4rn4RGSC3.4
Celera4168,150,057 - 168,185,733 (+)NCBICelera
Cytogenetic Map4q44NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
actin cytoskeleton  (ISO)
cytoplasm  (ISO)
cytosol  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. MICAL-1 is a negative regulator of MST-NDR kinase signaling and apoptosis. Zhou Y, etal., Mol Cell Biol. 2011 Sep;31(17):3603-15. doi: 10.1128/MCB.01389-10. Epub 2011 Jul 5.
Additional References at PubMed
PMID:12477932   PMID:15037617   PMID:15067004   PMID:15308672   PMID:15632090   PMID:18555663  


Genomics

Comparative Map Data
Stk38l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24179,616,288 - 179,693,177 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl4179,634,275 - 179,690,983 (+)Ensembl
Rnor_6.04181,027,212 - 181,089,735 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4181,027,212 - 181,089,740 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04245,213,201 - 245,245,025 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44184,316,579 - 184,392,709 (+)NCBIRGSC3.4rn4RGSC3.4
Celera4168,150,057 - 168,185,733 (+)NCBICelera
Cytogenetic Map4q44NCBI
STK38L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381227,244,286 - 27,325,959 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1227,243,968 - 27,325,959 (+)EnsemblGRCh38hg38GRCh38
GRCh371227,397,219 - 27,478,892 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361227,288,373 - 27,369,795 (+)NCBINCBI36hg18NCBI36
Build 341227,288,374 - 27,369,794NCBI
Celera1232,542,971 - 32,624,487 (+)NCBI
Cytogenetic Map12p11.23NCBI
HuRef1227,166,484 - 27,247,993 (+)NCBIHuRef
CHM1_11227,361,286 - 27,442,760 (+)NCBICHM1_1
T2T-CHM13v2.01227,116,250 - 27,197,594 (+)NCBI
Stk38l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396146,626,428 - 146,680,312 (+)NCBIGRCm39mm39
GRCm39 Ensembl6146,626,493 - 146,680,310 (+)Ensembl
GRCm386146,724,930 - 146,778,814 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6146,724,995 - 146,778,812 (+)EnsemblGRCm38mm10GRCm38
MGSCv376146,673,452 - 146,727,336 (+)NCBIGRCm37mm9NCBIm37
MGSCv366146,682,178 - 146,735,977 (+)NCBImm8
Celera6149,764,413 - 149,820,410 (+)NCBICelera
Cytogenetic Map6G3NCBI
Stk38l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540543,317,726 - 43,390,265 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540543,364,474 - 43,389,618 (+)NCBIChiLan1.0ChiLan1.0
STK38L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11261,603,456 - 61,645,899 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1261,603,462 - 61,645,899 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01258,985,367 - 59,066,274 (-)NCBIMhudiblu_PPA_v0panPan3
STK38L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12720,429,370 - 20,509,876 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2720,429,372 - 20,510,059 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2725,878,589 - 25,959,110 (+)NCBI
ROS_Cfam_1.02720,624,441 - 20,704,954 (-)NCBI
ROS_Cfam_1.0 Ensembl2720,621,810 - 20,704,996 (-)Ensembl
UMICH_Zoey_3.12720,429,279 - 20,509,770 (-)NCBI
UNSW_CanFamBas_1.02720,458,152 - 20,538,114 (-)NCBI
UU_Cfam_GSD_1.02726,041,241 - 26,121,753 (+)NCBI
Stk38l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494582,336,084 - 82,409,699 (-)NCBI
SpeTri2.0NW_004936548257,959 - 332,545 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STK38L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl546,490,410 - 46,632,573 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1546,490,981 - 46,574,716 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2550,042,869 - 50,126,545 (-)NCBISscrofa10.2Sscrofa10.2susScr3
STK38L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11126,981,109 - 27,060,560 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1127,018,534 - 27,060,579 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660698,000,235 - 8,079,538 (-)NCBIVero_WHO_p1.0
Stk38l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475050,591 - 134,481 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
RH138508  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24179,690,576 - 179,690,727 (+)MAPPERmRatBN7.2
Rnor_6.04181,087,135 - 181,087,285NCBIRnor6.0
Rnor_5.04245,244,630 - 245,244,780UniSTSRnor5.0
Celera4168,185,338 - 168,185,488UniSTS
RH 3.4 Map41090.0UniSTS
Cytogenetic Map4q44UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
2303623Vencon2Ventilatory control QTL 23.8respiration trait (VT:0001943)minute ventilation (CMO:0000132)4135204660180204660Rat
1578674Bmd12Bone mineral density QTL 123.8femur mineral mass (VT:0010011)cortical volumetric bone mineral density (CMO:0001730)4135699135180699135Rat
2293659Bmd35Bone mineral density QTL 354.50.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)4137755016181392681Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4144639524182687754Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4144639524182687754Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4145568712182687754Rat
10053718Scort25Serum corticosterone level QTL 252.150.0097blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)4155561574182687754Rat
1300109Rf13Renal function QTL 133.91renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)4157710145182687754Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:450
Count of miRNA genes:236
Interacting mature miRNAs:267
Transcripts:ENSRNOT00000002502
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 34 10 4 12 4 1 2 73 35 33 11 1
Low 9 47 37 7 37 7 9 1 8 7
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000002502   ⟹   ENSRNOP00000002502
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4179,634,275 - 179,690,972 (+)Ensembl
Rnor_6.0 Ensembl4181,027,212 - 181,087,530 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000086813   ⟹   ENSRNOP00000068621
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4179,674,272 - 179,690,983 (+)Ensembl
Rnor_6.0 Ensembl4181,055,662 - 181,089,740 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000108452   ⟹   ENSRNOP00000083335
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4179,634,275 - 179,675,618 (+)Ensembl
RefSeq Acc Id: NM_001083336   ⟹   NP_001076805
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24179,634,275 - 179,690,972 (+)NCBI
Rnor_6.04181,027,212 - 181,087,530 (+)NCBI
Rnor_5.04245,213,201 - 245,245,025 (+)NCBI
RGSC_v3.44184,316,579 - 184,392,709 (+)RGD
Celera4168,150,057 - 168,185,733 (+)RGD
Sequence:
RefSeq Acc Id: XM_039108393   ⟹   XP_038964321
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24179,616,288 - 179,693,177 (+)NCBI
RefSeq Acc Id: XM_039108394   ⟹   XP_038964322
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24179,634,209 - 179,693,177 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001076805 (Get FASTA)   NCBI Sequence Viewer  
  XP_038964321 (Get FASTA)   NCBI Sequence Viewer  
  XP_038964322 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI60812 (Get FASTA)   NCBI Sequence Viewer  
  ABO26295 (Get FASTA)   NCBI Sequence Viewer  
  EDM01408 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001076805   ⟸   NM_001083336
- UniProtKB: A4GW50 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000002502   ⟸   ENSRNOT00000002502
RefSeq Acc Id: ENSRNOP00000068621   ⟸   ENSRNOT00000086813
RefSeq Acc Id: XP_038964321   ⟸   XM_039108393
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038964322   ⟸   XM_039108394
- Peptide Label: isoform X1
RefSeq Acc Id: ENSRNOP00000083335   ⟸   ENSRNOT00000108452
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A4GW50-F1-model_v2 AlphaFold A4GW50 1-464 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693507
Promoter ID:EPDNEW_R4030
Type:multiple initiation site
Name:Stk38l_1
Description:serine/threonine kinase 38 like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04181,027,213 - 181,027,273EPDNEW

Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564793 AgrOrtholog
BioCyc Gene G2FUF-42425 BioCyc
Ensembl Genes ENSRNOG00000001828 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000002502 ENTREZGENE
  ENSRNOP00000002502.6 UniProtKB/TrEMBL
  ENSRNOP00000068621.2 UniProtKB/TrEMBL
  ENSRNOP00000083335.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000002502 ENTREZGENE
  ENSRNOT00000002502.8 UniProtKB/TrEMBL
  ENSRNOT00000086813.2 UniProtKB/TrEMBL
  ENSRNOT00000108452.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7460150 IMAGE-MGC_LOAD
InterPro AGC-kinase_C UniProtKB/TrEMBL
  Kinase-like_dom UniProtKB/TrEMBL
  Pkinase_C UniProtKB/TrEMBL
  Prot_kinase_cat_dom UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/TrEMBL
  Ser/Thr_kinase_AS UniProtKB/TrEMBL
KEGG Report rno:691337 UniProtKB/TrEMBL
MGC_CLONE MGC:187219 IMAGE-MGC_LOAD
NCBI Gene 691337 ENTREZGENE
Pfam Pkinase UniProtKB/TrEMBL
  Pkinase_C UniProtKB/TrEMBL
PhenoGen Stk38l PhenoGen
PROSITE AGC_KINASE_CTER UniProtKB/TrEMBL
  PROTEIN_KINASE_ATP UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/TrEMBL
  PROTEIN_KINASE_ST UniProtKB/TrEMBL
SMART S_TKc UniProtKB/TrEMBL
Superfamily-SCOP Kinase_like UniProtKB/TrEMBL
UniProt A0A0G2JT94_RAT UniProtKB/TrEMBL
  A0A8I5ZVV6_RAT UniProtKB/TrEMBL
  A4GW50 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary D4AA09 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-05-24 Stk38l  serine/threonine kinase 38 like  LOC686663  similar to putative serine/threonine kinase NDR54  Data Merged 1643240 APPROVED
2008-09-22 Stk38l  serine/threonine kinase 38 like  RGD1564793  similar to KIAA0965 protein   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-05-05 RGD1564793  similar to KIAA0965 protein   LOC691337  similar to putative serine/threonine kinase NDR54  Data Merged 737654 APPROVED
2008-04-30 RGD1564793  similar to KIAA0965 protein   RGD1564793_predicted  similar to KIAA0965 protein (predicted)  'predicted' is removed 2292626 APPROVED
2006-11-20 LOC686663  similar to putative serine/threonine kinase NDR54      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC691337  similar to putative serine/threonine kinase NDR54      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-03-07 RGD1564793_predicted  similar to KIAA0965 protein (predicted)  LOC500365  similar to KIAA0965 protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC500365  similar to KIAA0965 protein      Symbol and Name status set to provisional 70820 PROVISIONAL