Ghrl (ghrelin and obestatin prepropeptide) - Rat Genome Database

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Gene: Ghrl (ghrelin and obestatin prepropeptide) Rattus norvegicus
Analyze
Symbol: Ghrl
Name: ghrelin and obestatin prepropeptide
RGD ID: 632283
Description: Enables ghrelin receptor binding activity and growth hormone-releasing hormone activity. Involved in several processes, including negative regulation of cytokine production; positive regulation of peptide hormone secretion; and regulation of digestive system process. Acts upstream of or within negative regulation of insulin secretion. Located in cytoplasm. Is active in Schaffer collateral - CA1 synapse and glutamatergic synapse. Used to study middle cerebral artery infarction. Biomarker of multiple endocrine neoplasia and obstructive sleep apnea. Human ortholog(s) of this gene implicated in diabetic neuropathy; esophagus adenocarcinoma; morbid obesity; obesity; and type 2 diabetes mellitus. Orthologous to human GHRL (ghrelin and obestatin prepropeptide); PARTICIPATES IN ghrelin system pathway; INTERACTS WITH 2,3,4,7,8-Pentachlorodibenzofuran; 3,4-methylenedioxymethamphetamine; 3,7-dihydropurine-6-thione.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: appetite-regulating hormone; ghrelin; ghrelin precursor; ghrelin/obestatin prepropeptide; growth hormone secretagogue; growth hormone-releasing peptide; LOC59301; motilin-related peptide
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24146,865,712 - 146,869,621 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl4146,865,712 - 146,869,621 (-)Ensembl
Rnor_6.04145,674,157 - 145,678,066 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4145,674,157 - 145,678,066 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04208,969,963 - 208,976,778 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44149,622,566 - 149,628,111 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14149,867,406 - 149,872,952 (-)NCBI
Celera4135,420,041 - 135,423,946 (-)NCBICelera
Cytogenetic Map4q42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-anisomycin  (ISO)
2,3,4,7,8-Pentachlorodibenzofuran  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
3,7-dihydropurine-6-thione  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
6-chloro-2,3,4,9-tetrahydro-1H-carbazole-1-carboxamide  (ISO)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (ISO)
ammonium chloride  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
atropine  (EXP)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
capsaicin  (EXP,ISO)
capsazepine  (ISO)
carbon nanotube  (ISO)
chloroprene  (ISO)
chlorpyrifos  (EXP,ISO)
chromium(6+)  (ISO)
cobalt dichloride  (EXP)
copper atom  (EXP)
copper(0)  (EXP)
cysteamine  (EXP)
D-glucose  (ISO)
dexamethasone  (ISO)
dexloxiglumide  (ISO)
dextran sulfate  (ISO)
dopamine  (EXP)
doxorubicin  (EXP)
famotidine  (EXP)
flavonoids  (EXP)
fructose  (EXP)
furan  (EXP)
glucose  (ISO)
histamine  (EXP)
homoeriodictyol  (ISO)
indometacin  (EXP)
isoprenaline  (EXP)
lipopolysaccharide  (EXP)
malonaldehyde  (EXP)
mercaptopurine  (EXP)
metformin  (ISO)
methylmercury chloride  (ISO)
monosodium L-glutamate  (EXP)
N-methyl-4-phenylpyridinium  (EXP)
olanzapine  (ISO)
oleanolic acid  (ISO)
orlistat  (ISO)
paraquat  (ISO)
pentobarbital  (EXP)
pirinixic acid  (ISO)
prostaglandin E2  (EXP)
prostaglandins E  (ISO)
prostaglandins F  (ISO)
purine-6-thiol  (EXP)
rotenone  (EXP)
ruthenium red  (ISO)
serotonin  (EXP)
sodium arsenite  (ISO)
Sodium oleate  (ISO)
streptozocin  (EXP)
testosterone  (EXP)
titanium dioxide  (ISO)
triphenyl phosphate  (ISO)
tropan-3alpha-yl 3-hydroxy-2-phenylpropanoate  (EXP)
uranium atom  (EXP,ISO)
zinc atom  (EXP)
zinc(0)  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
actin polymerization or depolymerization  (ISO,ISS)
adult feeding behavior  (ISO,ISS)
decidualization  (ISO,ISS)
dendrite development  (ISO)
energy homeostasis  (ISO)
excitatory postsynaptic potential  (ISO)
G protein-coupled receptor signaling pathway  (IDA)
gastric acid secretion  (IBA,IDA)
gastric emptying  (IDA)
negative regulation of apoptotic process  (IDA,ISO,ISS)
negative regulation of circadian sleep/wake cycle, REM sleep  (ISO)
negative regulation of endothelial cell proliferation  (ISO,ISS)
negative regulation of inflammatory response  (IBA,ISO,ISS)
negative regulation of insulin secretion  (IDA,ISO)
negative regulation of interleukin-1 beta production  (IDA,ISO,ISS)
negative regulation of interleukin-6 production  (ISO,ISS)
negative regulation of locomotion  (ISO)
negative regulation of tumor necrosis factor production  (IDA,ISO,ISS)
positive regulation of adipose tissue development  (IDA)
positive regulation of appetite  (IMP,ISO,ISS)
positive regulation of bone development  (IDA)
positive regulation of circadian sleep/wake cycle, non-REM sleep  (ISO)
positive regulation of cold-induced thermogenesis  (ISO,ISS)
positive regulation of corticotropin secretion  (ISO)
positive regulation of cortisol secretion  (ISO)
positive regulation of cytosolic calcium ion concentration  (IDA)
positive regulation of eating behavior  (IDA)
positive regulation of feeding behavior  (IDA)
positive regulation of gastric mucosal blood circulation  (IDA)
positive regulation of gastro-intestinal system smooth muscle contraction  (IDA)
positive regulation of growth  (IDA)
positive regulation of growth hormone secretion  (IBA,IDA,ISO)
positive regulation of growth rate  (IDA)
positive regulation of insulin secretion  (IDA)
positive regulation of insulin secretion involved in cellular response to glucose stimulus  (IDA)
positive regulation of MAPK cascade  (ISO,ISS)
positive regulation of protein tyrosine kinase activity  (IEA)
positive regulation of response to food  (IDA)
positive regulation of small intestinal transit  (IDA)
positive regulation of small intestine smooth muscle contraction  (IDA)
positive regulation of sprouting angiogenesis  (IDA)
positive regulation of synapse assembly  (ISO)
positive regulation of vascular endothelial cell proliferation  (IDA)
postsynaptic modulation of chemical synaptic transmission  (IDA,IMP)
regulation of cell population proliferation  (ISO,ISS)
regulation of gastric motility  (IDA)
regulation of postsynapse organization  (IDA,IMP)
regulation of response to food  (IBA,IDA)
regulation of transmission of nerve impulse  (IDA)
response to electrical stimulus  (IEP)
response to estrogen  (ISO,ISS)
response to hormone  (ISO,ISS)
response to nutrient levels  (IEP)

Cellular Component
axon  (ISO,ISS)
cytoplasm  (IDA,ISO)
extracellular region  (ISO,ISS,TAS)
extracellular space  (IBA,IC,ISO,ISS)
glutamatergic synapse  (IDA,IMP)
postsynapse  (IEA)
Schaffer collateral - CA1 synapse  (IDA,IMP)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
1. Andreis PG, etal., FEBS Lett 2003 Feb 11;536(1-3):173-9.
2. Arbeiter AK, etal., Nephrol Dial Transplant. 2009 Feb;24(2):643-6. doi: 10.1093/ndt/gfn529. Epub 2008 Sep 22.
3. Ariyasu H, etal., Endocrinology 2002 Sep;143(9):3341-50.
4. Bagnasco M, etal., Endocrinology 2002 Feb;143(2):726-9.
5. Berrout L and Isokawa M, Neurosci Lett. 2012 May 16;516(2):280-4. doi: 10.1016/j.neulet.2012.04.009. Epub 2012 Apr 10.
6. Berthold HK, etal., Clin Chim Acta. 2009 Jan;399(1-2):112-6. Epub 2008 Sep 25.
7. Bilgin HM, etal., Physiol Res. 2008;57(4):563-8. Epub 2007 Jul 26.
8. Bizzarri C, etal., Horm Metab Res. 2004 Mar;36(3):164-9.
9. Cavalier M, etal., Eur J Neurosci. 2015 Oct;42(8):2568-76. doi: 10.1111/ejn.13013. Epub 2015 Jul 29.
10. Chelikani PK, etal., Diabetes. 2006 Nov;55(11):3038-46.
11. Choi K, etal., Endocrinology 2003 Mar;144(3):754-9.
12. Chou CC, etal., Intern Med. 2010;49(19):2057-64. Epub 2010 Oct 1.
13. Date Y, etal., Diabetes. 2002 Jan;51(1):124-9.
14. Depoortere I, etal., Eur J Pharmacol. 2005 May 16;515(1-3):160-8.
15. Dezaki K, etal., Diabetes. 2006 Dec;55(12):3486-93.
16. Faulconbridge LF, etal., Diabetes 2003 Sep;52(9):2260-5.
17. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
18. Gauna C, etal., Mol Cell Endocrinol. 2006 Jun 7;251(1-2):103-11. Epub 2006 Apr 27.
19. Gong Y, etal., J Gastroenterol. 2014 Feb;49(2):219-30. doi: 10.1007/s00535-013-0789-y. Epub 2013 Mar 26.
20. Hosoda H, etal., J Biol Chem 2000 Jul 21;275(29):21995-2000.
21. Huda MS, etal., Int J Obes (Lond). 2009 Mar;33(3):317-25. Epub 2009 Feb 3.
22. Hwang S, etal., Endocr J. 2009;56(4):609-17. Epub 2009 Apr 7.
23. Ishii S, etal., Endocrinology 2002 Dec;143(12):4934-7.
24. IƱiguez G, etal., Horm Res Paediatr. 2011 Feb;75(2):94-100. doi: 10.1159/000317429. Epub 2010 Sep 23.
25. Kobelt P, etal., Gut. 2006 Jun;55(6):788-92. Epub 2005 Jun 30.
26. Kohno D, etal., Diabetes 2003 Apr;52(4):948-56.
27. Kojima M and Kangawa K, Physiol Rev. 2005 Apr;85(2):495-522.
28. Kojima M, etal., Nature 1999 Dec 9;402(6762):656-60.
29. Kos K, etal., Diabet Med. 2008 Dec;25(12):1400-5.
30. Kyoraku I, etal., Biochem Biophys Res Commun. 2009 Nov 20;389(3):405-8. Epub 2009 Sep 3.
31. Lee CC, etal., Arch Med Res. 2008 Nov;39(8):785-90.
32. Lee CJ, etal., Perit Dial Int. 2008 Jun;28 Suppl 3:S196-200.
33. Li L, etal., Acta Pharmacol Sin. 2006 May;27(5):527-35.
34. MGD data from the GO Consortium
35. Murray CD, etal., Neurogastroenterol Motil. 2006 Dec;18(12):1112-20.
36. OMIM Disease Annotation Pipeline
37. Online Mendelian Inheritance in Man, OMIM (TM).
38. RGD automated data pipeline
39. RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
40. RGD automated import pipeline for gene-chemical interactions
41. Shimada M, etal., Biochem Biophys Res Commun 2003 Mar 14;302(3):520-5.
42. Shimizu Y, etal., Clin Cancer Res. 2003 Feb;9(2):774-8.
43. Steinle NI, etal., J Clin Endocrinol Metab. 2005 Dec;90(12):6672-7. Epub 2005 Oct 4.
44. Stevanovic D, etal., Exp Biol Med (Maywood). 2006 Nov;231(10):1610-5.
45. Szentirmai E, etal., Proc Natl Acad Sci U S A. 2009 Aug 18;106(33):14069-74. doi: 10.1073/pnas.0903090106. Epub 2009 Aug 4.
46. Tamura H, etal., Endocrinology 2002 Sep;143(9):3268-75.
47. Tarasiuk A, etal., Sleep. 2016 Apr 1;39(4):887-97. doi: 10.5665/sleep.5648.
48. Tena-Sempere M, etal., Endocrinology 2002 Feb;143(2):717-25.
49. Theil MM, etal., J Immunol. 2009 Aug 15;183(4):2859-66. doi: 10.4049/jimmunol.0803362. Epub 2009 Jul 20.
50. Thompson NM, etal., Endocrinology. 2003 Nov;144(11):4859-67. Epub 2003 Jul 24.
51. Thompson NM, etal., Endocrinology. 2004 Jan;145(1):234-42. Epub 2003 Oct 9.
52. Ueno H, etal., Endocr J. 2007 Dec;54(6):895-902. Epub 2007 Nov 16.
53. Verhulst PJ, etal., Gastroenterology. 2008 Oct;135(4):1267-76. Epub 2008 Jun 25.
54. Wang W, etal., Am J Physiol Renal Physiol. 2009 Oct;297(4):F1032-7. doi: 10.1152/ajprenal.00044.2009. Epub 2009 Jul 22.
55. Warzecha Z, etal., J Physiol Pharmacol. 2006 Sep;57(3):425-37.
56. Wiedemann T, etal., Diabetes. 2016 Feb;65(2):406-20. doi: 10.2337/db15-0374. Epub 2015 Oct 28.
57. Williams DL, etal., Endocrinology 2003 Jul;144(7):2765-7.
58. Wu IC, etal., Neoplasia. 2011 Apr;13(4):386-92. doi: 10.1593/neo.101722.
59. Wu R, etal., Am J Physiol Heart Circ Physiol. 2004 Sep;287(3):H1296-302. Epub 2004 May 20.
60. Xu L, etal., Peptides. 2013 Oct;48:137-46. doi: 10.1016/j.peptides.2013.08.010. Epub 2013 Aug 18.
61. Yang CG, etal., Mol Med Rep. 2011 Nov-Dec;4(6):1061-5. doi: 10.3892/mmr.2011.571. Epub 2011 Aug 24.
62. Yang HM, etal., Zhongguo Dang Dai Er Ke Za Zhi. 2010 Jul;12(7):563-8.
63. Yang M, etal., Biochem Biophys Res Commun. 2007 Jul 27;359(2):373-8. Epub 2007 May 25.
64. Zaniolo K, etal., Invest Ophthalmol Vis Sci. 2011 Jul 23;52(8):5376-86. doi: 10.1167/iovs.10-7152.
Additional References at PubMed
PMID:8889548   PMID:10930375   PMID:11162448   PMID:11306336   PMID:11549267   PMID:11688975   PMID:12105291   PMID:12107501   PMID:12444052   PMID:12470640   PMID:12486113   PMID:12566947  
PMID:12865257   PMID:12948844   PMID:12953161   PMID:12959995   PMID:14530511   PMID:14550279   PMID:14585959   PMID:14993197   PMID:15039149   PMID:15070777   PMID:15093700   PMID:15093702  
PMID:15117840   PMID:15142846   PMID:15148384   PMID:15158140   PMID:15232612   PMID:15254759   PMID:15256489   PMID:15256494   PMID:15272046   PMID:15284203   PMID:15284210   PMID:15292338  
PMID:15296479   PMID:15328073   PMID:15331358   PMID:15350694   PMID:15475503   PMID:15528308   PMID:15531532   PMID:15550621   PMID:15555596   PMID:15563933   PMID:15564328   PMID:15572207  
PMID:15572208   PMID:15576457   PMID:15582726   PMID:15591499   PMID:15604212   PMID:15694847   PMID:15720710   PMID:15746259   PMID:15774556   PMID:15778430   PMID:15790726   PMID:15824852  
PMID:15890776   PMID:15919752   PMID:15946162   PMID:15978880   PMID:15983198   PMID:16102855   PMID:16179409   PMID:16187069   PMID:16226323   PMID:16284174   PMID:16322794   PMID:16322795  
PMID:16339208   PMID:16394173   PMID:16417945   PMID:16423919   PMID:16455774   PMID:16476508   PMID:16491079   PMID:16549524   PMID:16574277   PMID:16580091   PMID:16600402   PMID:16669599  
PMID:16677709   PMID:16721030   PMID:16721031   PMID:16793188   PMID:16943587   PMID:16955211   PMID:17060947   PMID:17078977   PMID:17113048   PMID:17192476   PMID:17251274   PMID:17280591  
PMID:17280594   PMID:17303662   PMID:17392603   PMID:17413663   PMID:17462598   PMID:17481674   PMID:17494105   PMID:17512090   PMID:17556859   PMID:17575083   PMID:17578884   PMID:17595255  
PMID:17619061   PMID:17640183   PMID:17646721   PMID:17719137   PMID:17895831   PMID:17904104   PMID:17914952   PMID:17931715   PMID:17936371   PMID:17952858   PMID:17993760   PMID:18024547  
PMID:18070752   PMID:18070755   PMID:18208550   PMID:18252949   PMID:18291254   PMID:18310448   PMID:18310451   PMID:18329818   PMID:18342400   PMID:18343456   PMID:18346818   PMID:18385464  
PMID:18389390   PMID:18400333   PMID:18480381   PMID:18495830   PMID:18562476   PMID:18566321   PMID:18773927   PMID:18776988   PMID:18784614   PMID:18789988   PMID:18974228   PMID:19011367  
PMID:19017729   PMID:19118591   PMID:19141406   PMID:19540881   PMID:19608647   PMID:19703102   PMID:19778563   PMID:19828130   PMID:19876773   PMID:19891630   PMID:19907132   PMID:19908932  
PMID:19944125   PMID:19944728   PMID:19948829   PMID:20044509   PMID:20056829   PMID:20149910   PMID:20155328   PMID:20164026   PMID:20335227   PMID:20384799   PMID:20456848   PMID:20496472  
PMID:20501445   PMID:20525876   PMID:20624436   PMID:20646435   PMID:20668029   PMID:20691233   PMID:20814069   PMID:20814072   PMID:20975320   PMID:21029370   PMID:21054519   PMID:21059113  
PMID:21258824   PMID:21269967   PMID:21279549   PMID:21303672   PMID:21334429   PMID:21418984   PMID:21448464   PMID:21516493   PMID:21617329   PMID:21640160   PMID:21719535   PMID:21722214  
PMID:21763741   PMID:21874320   PMID:21915821   PMID:21933568   PMID:22005105   PMID:22035179   PMID:22100225   PMID:22114115   PMID:22137939   PMID:22190447   PMID:22210742   PMID:22339616  
PMID:22350756   PMID:22447011   PMID:22459287   PMID:22465905   PMID:22487248   PMID:22490634   PMID:22658447   PMID:22669511   PMID:22715380   PMID:22750144   PMID:22813405   PMID:22886413  
PMID:22960364   PMID:22992743   PMID:23066908   PMID:23090426   PMID:23129112   PMID:23216977   PMID:23494606   PMID:23506735   PMID:23563696   PMID:23584608   PMID:23603525   PMID:23608221  
PMID:23651849   PMID:23724144   PMID:23744028   PMID:23770258   PMID:23774069   PMID:23892033   PMID:23955309   PMID:23994018   PMID:23994559   PMID:24036593   PMID:24126924   PMID:24261121  
PMID:24304576   PMID:24304579   PMID:24357139   PMID:24366191   PMID:24367106   PMID:24428428   PMID:24465706   PMID:24524370   PMID:24617825   PMID:24668712   PMID:24742241   PMID:24780389  
PMID:24830778   PMID:24840386   PMID:24848869   PMID:24979506   PMID:25049077   PMID:25058156   PMID:25111274   PMID:25193331   PMID:25230765   PMID:25247193   PMID:25344190   PMID:25447526  
PMID:26032330   PMID:26121343   PMID:26122892   PMID:26188171   PMID:26283199   PMID:26364514   PMID:26424164   PMID:26431788   PMID:26467127   PMID:26586206   PMID:26600052   PMID:26612921  
PMID:26907996   PMID:27106635   PMID:27152763   PMID:27454242   PMID:27825986   PMID:28010876   PMID:28219000   PMID:28282447   PMID:28410130   PMID:28513740   PMID:28635609   PMID:28744974  
PMID:28801520   PMID:28838338   PMID:28984792   PMID:29066728   PMID:29113826   PMID:29222553   PMID:29447000   PMID:29927808   PMID:30111257   PMID:30525248   PMID:30553544   PMID:30580497  
PMID:31155149   PMID:32003536   PMID:32485129   PMID:32607622   PMID:33116243  


Genomics

Candidate Gene Status
Ghrl is a candidate Gene for QTL Ept5
Comparative Map Data
Ghrl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24146,865,712 - 146,869,621 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl4146,865,712 - 146,869,621 (-)Ensembl
Rnor_6.04145,674,157 - 145,678,066 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4145,674,157 - 145,678,066 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04208,969,963 - 208,976,778 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44149,622,566 - 149,628,111 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14149,867,406 - 149,872,952 (-)NCBI
Celera4135,420,041 - 135,423,946 (-)NCBICelera
Cytogenetic Map4q42NCBI
GHRL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl310,285,666 - 10,292,947 (-)EnsemblGRCh38hg38GRCh38
GRCh38310,285,666 - 10,292,947 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37310,327,350 - 10,334,631 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36310,302,434 - 10,307,409 (-)NCBINCBI36hg18NCBI36
Build 34310,302,433 - 10,307,409NCBI
Celera310,263,242 - 10,270,439 (-)NCBI
Cytogenetic Map3p25.3NCBI
HuRef310,262,844 - 10,269,999 (-)NCBIHuRef
CHM1_1310,277,571 - 10,284,767 (-)NCBICHM1_1
Ghrl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396113,693,080 - 113,696,872 (-)NCBIGRCm39mm39
GRCm39 Ensembl6113,693,080 - 113,696,841 (-)Ensembl
GRCm386113,716,119 - 113,719,911 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6113,716,119 - 113,719,880 (-)EnsemblGRCm38mm10GRCm38
MGSCv376113,666,113 - 113,669,874 (-)NCBIGRCm37mm9NCBIm37
MGSCv366113,681,896 - 113,685,657 (-)NCBImm8
Celera6115,541,628 - 115,545,391 (-)NCBICelera
Cytogenetic Map6E3NCBI
cM Map652.84NCBI
Ghrl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555611,676,576 - 1,681,812 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555611,676,475 - 1,682,205 (-)NCBIChiLan1.0ChiLan1.0
GHRL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1310,573,537 - 10,580,723 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl310,573,537 - 10,580,723 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0310,221,829 - 10,229,229 (-)NCBIMhudiblu_PPA_v0panPan3
GHRL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1208,092,921 - 8,097,512 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl208,092,957 - 8,097,510 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha208,127,316 - 8,131,869 (+)NCBI
ROS_Cfam_1.0208,122,116 - 8,127,217 (+)NCBI
UMICH_Zoey_3.1207,844,540 - 7,849,093 (+)NCBI
UNSW_CanFamBas_1.0208,190,266 - 8,194,819 (+)NCBI
UU_Cfam_GSD_1.0208,163,907 - 8,168,460 (+)NCBI
Ghrl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494215,867,085 - 15,872,024 (-)NCBI
SpeTri2.0NW_0049366023,037,862 - 3,044,863 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GHRL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1366,316,436 - 66,452,917 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11366,442,106 - 66,453,576 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21373,453,082 - 73,480,182 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap13q31NCBI
GHRL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12246,326,458 - 46,332,906 (-)NCBI
ChlSab1.1 Ensembl2246,325,913 - 46,330,962 (-)Ensembl
Vero_WHO_p1.0NW_023666041120,205,064 - 120,210,786 (+)NCBI
Ghrl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247315,257,813 - 5,262,878 (+)NCBI

Position Markers
RH134973  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24146,865,731 - 146,866,872 (+)MAPPERmRatBN7.2
Rnor_6.04145,674,177 - 145,675,317NCBIRnor6.0
Rnor_5.04208,970,576 - 208,971,716UniSTSRnor5.0
RGSC_v3.44149,622,586 - 149,623,726UniSTSRGSC3.4
Celera4135,420,061 - 135,421,201UniSTS
RH 3.4 Map4948.7UniSTS
Cytogenetic Map4q42UniSTS
BF408077  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24146,865,461 - 146,865,561 (+)MAPPERmRatBN7.2
Rnor_6.04145,673,907 - 145,674,006NCBIRnor6.0
Rnor_5.04208,970,306 - 208,970,405UniSTSRnor5.0
RGSC_v3.44149,622,316 - 149,622,415UniSTSRGSC3.4
Celera4135,419,791 - 135,419,890UniSTS
RH 3.4 Map4949.1UniSTS
Cytogenetic Map4q42UniSTS
PMC262394P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24146,865,824 - 146,866,894 (+)MAPPERmRatBN7.2
Rnor_6.04145,674,270 - 145,675,339NCBIRnor6.0
Rnor_5.04208,970,669 - 208,971,738UniSTSRnor5.0
RGSC_v3.44149,622,679 - 149,623,748UniSTSRGSC3.4
Celera4135,420,154 - 135,421,223UniSTS
Cytogenetic Map4q42UniSTS
PMC262394P3  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24146,868,795 - 146,869,548 (+)MAPPERmRatBN7.2
Rnor_6.04145,677,241 - 145,677,993NCBIRnor6.0
Rnor_5.04208,973,640 - 208,974,392UniSTSRnor5.0
Celera4135,423,125 - 135,423,873UniSTS
Cytogenetic Map4q42UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)444463720155883716Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)444463908148090542Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)444463908148090542Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)456647873149491524Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)459948935154902892Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)464528739157573521Rat
70177Xhs1X-ray hypersensitivity QTL 125.1intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)482798864152731274Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)483428419177635233Rat
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)485253748148090731Rat
12798523Anxrr56Anxiety related response QTL 562.830.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)485253748150276390Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)485379421167139601Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)493308457167139447Rat
61434Cia3Collagen induced arthritis QTL 34.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4103194656148194656Rat
2302049Pia32Pristane induced arthritis QTL 325.10.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)4105789505150789505Rat
731165Uae21Urinary albumin excretion QTL 212.40.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)4106649412151649412Rat
61406Scwia1Streptococcal cell wall induced arthritis QTL 12.3joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)4106805662151805662Rat
7207480Bss105Bone structure and strength QTL 1058.1femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)4109827074154827074Rat
1549832Bss3Bone structure and strength QTL 311femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)4109827074154827074Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4109866907167139601Rat
1331759Hrtrt13Heart rate QTL 133.54628heart pumping trait (VT:2000009)heart rate (CMO:0000002)4110275411168266883Rat
6478760Anxrr45Anxiety related response QTL 450.06717locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
6478763Anxrr46Anxiety related response QTL 460.07428locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
12798519Anxrr54Anxiety related response QTL 542.540.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4114627026159627026Rat
1300116Hrtrt5Heart rate QTL 53.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)4116179486151161268Rat
724535Cm18Cardiac mass QTL 182.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)4118856416163856416Rat
1331802Srn5Serum renin concentration QTL 53.045renin activity (VT:0005581)plasma renin activity level (CMO:0000116)4119428175157578333Rat
12798527Anxrr58Anxiety related response QTL 584.110.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4119463257147278687Rat
70201Gcr1Gastric cancer resistance QTL 12.7stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)4120260281147278687Rat
2293840Kiddil9Kidney dilation QTL 92.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)4120926564148090731Rat
634347Hcar8Hepatocarcinoma resistance QTL 85.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)4123143783168143783Rat
631683Bp116Blood pressure QTL 1160.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4124303370169303370Rat
6478778Anxrr51Anxiety related response QTL 510.25384locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4124778595169778595Rat
7411558Bw133Body weight QTL 13313.840.001body mass (VT:0001259)body weight gain (CMO:0000420)4125590636170590636Rat
61451Ciaa4CIA Autoantibody QTL 43.1blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)4126395976167139601Rat
737978Pia23Pristane induced arthritis QTL 235.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4131730738167139601Rat
631511Pia7Pristane induced arthritis QTL 74.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4131730738167139601Rat
1549827Scl46Serum cholesterol level QTL 463.5blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)4132396220177396220Rat
724558Plsm2Polydactyly-luxate syndrome (PLS) morphotypes QTL 20.0003hindlimb integrity trait (VT:0010563)hind foot phalanges count (CMO:0001949)4132422778177422778Rat
61422Cia13Collagen induced arthritis QTL 134.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4132642577167139601Rat
2303623Vencon2Ventilatory control QTL 23.8respiration trait (VT:0001943)minute ventilation (CMO:0000132)4135204660180204660Rat
1578674Bmd12Bone mineral density QTL 123.8femur mineral mass (VT:0010011)cortical volumetric bone mineral density (CMO:0001730)4135699135180699135Rat
2293659Bmd35Bone mineral density QTL 354.50.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)4137755016181392681Rat
61362Oia2Oil induced arthritis QTL 20.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4138503169173369699Rat
1298524Oia8Oil induced arthritis QTL 8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4138503169173369699Rat
1331738Bp209Blood pressure QTL 2092.979arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)4138503169179293946Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4144639524182687754Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4144639524182687754Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4145568712182687754Rat
634342Cia24Collagen induced arthritis QTL 244.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4146565735175236377Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:46
Count of miRNA genes:44
Interacting mature miRNAs:46
Transcripts:ENSRNOT00000014103
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 1 3 1 1 10 2 1 1
Low 1 11 40 25 16 25 7 10 1 11 8 10 7
Below cutoff 6 4 4 4 16 2 12

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000014103   ⟹   ENSRNOP00000014103
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4146,865,712 - 146,869,621 (-)Ensembl
Rnor_6.0 Ensembl4145,674,157 - 145,678,066 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000110276   ⟹   ENSRNOP00000089522
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4146,865,712 - 146,869,592 (-)Ensembl
RefSeq Acc Id: NM_021669   ⟹   NP_067701
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24146,865,712 - 146,869,621 (-)NCBI
Rnor_6.04145,674,157 - 145,678,066 (-)NCBI
Rnor_5.04208,969,963 - 208,976,778 (-)NCBI
RGSC_v3.44149,622,566 - 149,628,111 (-)RGD
Celera4135,420,041 - 135,423,946 (-)RGD
Sequence:
Reference Sequences
RefSeq Acc Id: NP_067701   ⟸   NM_021669
- Peptide Label: preproprotein
- UniProtKB: Q9QYH7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000014103   ⟸   ENSRNOT00000014103
RefSeq Acc Id: ENSRNOP00000089522   ⟸   ENSRNOT00000110276

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693315
Promoter ID:EPDNEW_R3837
Type:single initiation site
Name:Ghrl_1
Description:ghrelin and obestatin prepropeptide
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04145,678,073 - 145,678,133EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BUF/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
DA/OlaHsd (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
F344/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FXLE16/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/FarMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
HXB10/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEXF10A/StmMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
M520/NRrrcMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MWF/Hsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/OlalpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/RijCrl (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:632283 AgrOrtholog
Ensembl Genes ENSRNOG00000010349 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSRNOP00000014103 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000014103 ENTREZGENE, UniProtKB/Swiss-Prot
InterPro Motilin_assoc UniProtKB/Swiss-Prot
  Motilin_ghrelin UniProtKB/Swiss-Prot
  Preproghrelin UniProtKB/Swiss-Prot
KEGG Report rno:59301 UniProtKB/Swiss-Prot
NCBI Gene 59301 ENTREZGENE
PANTHER PTHR14122 UniProtKB/Swiss-Prot
Pfam Motilin_assoc UniProtKB/Swiss-Prot
  Motilin_ghrelin UniProtKB/Swiss-Prot
PhenoGen Ghrl PhenoGen
PRINTS GHRELIN UniProtKB/Swiss-Prot
UniProt GHRL_RAT UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q9ET69 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-18 Ghrl  ghrelin and obestatin prepropeptide  Ghrl  ghrelin/obestatin prepropeptide  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-12-04 Ghrl  ghrelin/obestatin prepropeptide  Ghrl  ghrelin  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-25 Ghrl  ghrelin  Ghrl  ghrelin precursor  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-12-14 Ghrl  ghrelin precursor      Symbol and Name status set to approved 1299863 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_expression expressed in stomach, intestine, hypothalamus, and leydig cells from adult testis 70382
gene_expression expressed in stomach, intestine, hypothalamus, and leydig cells from adult testis 625531
gene_expression highly expressed in stomach and also expressed in the hypothalamus and in the pituitary gland 625664
gene_expression highly expressed in stomach and also expressed in the hypothalamus and in the pituitary gland 625665
gene_function ligand for GH-secretagogue receptor 70382
gene_function endogenous ligand 625664
gene_function endogenous ligand 625665
gene_process stimulates appetite and adiposity 625531
gene_process involved in control of GH release and in testicular function 70382
gene_process stimulates GH release and has a potent orexigenic action 625664
gene_process stimulates GH release and has a potent orexigenic action 625665
gene_process controls appetite and stimulates GH releasing activity via the hypothalamic arcuate nucleus (ARC) 625664
gene_process controls appetite and stimulates GH releasing activity via the hypothalamic arcuate nucleus (ARC) 625665
gene_product 28 aa protein 70382
gene_protein 28 amino acids  
gene_regulation protein secretion is negatively regulated by leptin levels and fasting increases pulsatile secretion in high frequency and high amplitude episodes 625531
gene_regulation short-term secretory regulation is delayed in obese animals and that blood glucose levels may be involved in the delayed regulation 625664
gene_regulation short-term secretory regulation is delayed in obese animals and that blood glucose levels may be involved in the delayed regulation 625665