Thumpd3 (THUMP domain containing 3)

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Gene: Thumpd3 (THUMP domain containing 3) Rattus norvegicus

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Symbol:

Thumpd3

Name:

THUMP domain containing 3

RGD ID:

1560852

Description:

Predicted to enable tRNA (guanine(6)-N2)-methyltransferase activity and tRNA (guanine(7)-N2)-methyltransferase activity. Predicted to be involved in tRNA methylation. Predicted to be located in cytosol and nucleolus. Orthologous to human THUMPD3 (THUMP domain containing 3); INTERACTS WITH bisphenol A; flutamide; ketamine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC500288; RGD1560852; similar to THUMP domain containing 3; THUMP domain-containing protein 3; tRNA (guanine(6)-N2)-methyltransferase THUMP3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	THUMPD3 (THUMP domain containing 3)	HGNC	Ensembl, HomoloGene, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Thumpd3 (THUMP domain containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Thumpd3 (THUMP domain containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	THUMPD3 (THUMP domain containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	THUMPD3 (THUMP domain containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Thumpd3 (THUMP domain containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	THUMPD3 (THUMP domain containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	THUMPD3 (THUMP domain containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Thumpd3 (THUMP domain containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	THUMPD3 (THUMP domain containing 3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Thumpd3 (THUMP domain containing 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	thumpd3 (THUMP domain containing 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	M04B2.2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	thumpd3	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	147,741,288 - 147,764,254 (+)	NCBI		GRCr8
mRatBN7.2	4	146,185,422 - 146,209,802 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	146,185,503 - 146,211,246 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	151,569,798 - 151,592,778 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	147,350,610 - 147,373,590 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	145,972,021 - 145,994,999 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	144,985,850 - 145,010,164 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	144,985,880 - 145,008,831 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	208,284,202 - 208,308,521 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	148,918,100 - 148,941,045 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	4	134,744,697 - 134,767,664 (+)	NCBI		Celera
Cytogenetic Map	4	q42	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

3p deletion syndrome (ISO)

Atrioventricular Septal Defect 2 (ISO)

long QT syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

coumarin (ISO)

crocidolite asbestos (ISO)

Dibutyl phosphate (ISO)

dichloroacetic acid (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

enzyme inhibitor (ISO)

flutamide (EXP)

formaldehyde (ISO)

FR900359 (ISO)

heptanal (ISO)

hexanal (ISO)

ivermectin (ISO)

ketamine (EXP)

mercury atom (ISO)

mercury dibromide (ISO)

mercury(0) (ISO)

N-methyl-N-nitrosourea (ISO)

nefazodone (EXP)

nonanal (ISO)

octanal (ISO)

ozone (ISO)

p-chloromercuribenzoic acid (ISO)

paracetamol (ISO)

pentachlorophenol (ISO)

pentanal (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

propanal (ISO)

resveratrol (ISO)

Salinomycin (ISO)

SB 431542 (ISO)

sunitinib (ISO)

tetrachloromethane (ISO)

thioacetamide (EXP)

torcetrapib (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

tRNA methylation (IBA,ISO)

Cellular Component

cytoplasm (ISO)

cytosol (IEA,ISO)

nucleolus (IEA,ISO)

Molecular Function

protein binding (ISO)

tRNA (guanine(6)-N2)-methyltransferase activity (ISO)

tRNA (guanine(7)-N2)-methyltransferase activity (ISO)

tRNA (guanine) methyltransferase activity (IBA)

tRNA binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932

Genomics

Comparative Map Data

Thumpd3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	147,741,288 - 147,764,254 (+)	NCBI		GRCr8
mRatBN7.2	4	146,185,422 - 146,209,802 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	146,185,503 - 146,211,246 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	151,569,798 - 151,592,778 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	147,350,610 - 147,373,590 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	145,972,021 - 145,994,999 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	144,985,850 - 145,010,164 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	144,985,880 - 145,008,831 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	208,284,202 - 208,308,521 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	148,918,100 - 148,941,045 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	4	134,744,697 - 134,767,664 (+)	NCBI		Celera
Cytogenetic Map	4	q42	NCBI

THUMPD3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	9,363,054 - 9,386,791 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	9,362,971 - 9,386,791 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	9,404,738 - 9,428,475 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	9,379,736 - 9,402,412 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	3	9,379,735 - 9,402,412	NCBI
Celera	3	9,339,426 - 9,363,176 (+)	NCBI		Celera
Cytogenetic Map	3	p25.3	NCBI
HuRef	3	9,341,480 - 9,365,230 (+)	NCBI		HuRef
CHM1_1	3	9,354,927 - 9,378,706 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	3	9,354,825 - 9,378,730 (+)	NCBI		T2T-CHM13v2.0

Thumpd3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	113,023,292 - 113,045,239 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	113,023,186 - 113,045,234 (+)	Ensembl		GRCm39 Ensembl
GRCm38	6	113,046,302 - 113,068,278 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	113,046,225 - 113,068,273 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	112,996,321 - 113,018,267 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	113,012,104 - 113,034,050 (+)	NCBI		MGSCv36	mm8
Celera	6	114,875,220 - 114,897,164 (+)	NCBI		Celera
Cytogenetic Map	6	E3	NCBI
cM Map	6	52.73	NCBI

Thumpd3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955561	933,173 - 956,457 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955561	933,168 - 956,457 (+)	NCBI	ChiLan1.0	ChiLan1.0

THUMPD3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	9,374,529 - 9,397,487 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	9,379,287 - 9,402,245 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	9,315,275 - 9,338,096 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	9,557,642 - 9,581,157 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	9,557,894 - 9,581,157 (+)	Ensembl	panpan1.1		panPan2

THUMPD3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	8,779,442 - 8,802,286 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	8,779,442 - 8,802,215 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	8,811,833 - 8,834,603 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	8,808,906 - 8,831,764 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	8,808,289 - 8,831,654 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	8,530,804 - 8,553,575 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	8,876,208 - 8,898,976 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	8,849,544 - 8,872,338 (-)	NCBI		UU_Cfam_GSD_1.0

Thumpd3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404942	15,220,520 - 15,245,355 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936602	3,661,967 - 3,689,159 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936602	3,664,354 - 3,689,130 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

THUMPD3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	65,721,475 - 65,747,076 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	65,720,556 - 65,747,989 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	72,863,112 - 72,885,873 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

THUMPD3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	45,355,889 - 45,378,134 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	22	45,355,579 - 45,377,941 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	121,179,371 - 121,203,965 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Thumpd3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624731	4,052,631 - 4,077,486 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624731	4,052,618 - 4,078,639 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Thumpd3
28 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	290
Count of miRNA genes:	184
Interacting mature miRNAs:	203
Transcripts:	ENSRNOT00000009464
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1582232	Gluco25	Glucose level QTL 25	3.6	0.0023	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	85253748	148090731	Rat
1358352	Srcrt3	Stress Responsive Cort QTL 3	2.29		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	38465774	146803430	Rat
1300116	Hrtrt5	Heart rate QTL 5	3.76		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	4	116179486	151161268	Rat
6478693	Anxrr32	Anxiety related response QTL 32		0.00092	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	4	144639524	182687754	Rat
10755501	Bp390	Blood pressure QTL 390	2.5		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	4	26775591	168368347	Rat
631683	Bp116	Blood pressure QTL 116		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	124303370	169303370	Rat
61451	Ciaa4	CIA Autoantibody QTL 4	3.1		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	4	126395976	167139601	Rat
1331738	Bp209	Blood pressure QTL 209	2.979		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	138503169	179293946	Rat
6478700	Anxrr33	Anxiety related response QTL 33		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	144639524	182687754	Rat
1549827	Scl46	Serum cholesterol level QTL 46	3.5		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	4	132396220	177396220	Rat
731165	Uae21	Urinary albumin excretion QTL 21	2.4	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	4	106649412	151649412	Rat
737821	Hcar9	Hepatocarcinoma resistance QTL 9	3.7		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	4	109866907	167139601	Rat
7411558	Bw133	Body weight QTL 133	13.84	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	125590636	170590636	Rat
10401796	Kidm48	Kidney mass QTL 48			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	4	145568712	182687754	Rat
6478718	Anxrr34	Anxiety related response QTL 34		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	144639524	182687754	Rat
1549832	Bss3	Bone structure and strength QTL 3	11		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	4	109827074	154827074	Rat
70177	Xhs1	X-ray hypersensitivity QTL 1	25.1		intestine integrity trait (VT:0010554)	post-insult time to onset of moribundity (CMO:0001896)	4	82798864	152731274	Rat
2303623	Vencon2	Ventilatory control QTL 2	3.8		respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	4	135204660	180204660	Rat
1578674	Bmd12	Bone mineral density QTL 12	3.8		femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	4	135699135	180699135	Rat
1354660	Salc1	Saline consumption QTL 1	11.26		drinking behavior trait (VT:0001422)	saline drink intake rate (CMO:0001627)	4	44463908	148090542	Rat
1298082	Stresp4	Stress response QTL 4			blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	50119848	146803430	Rat
737978	Pia23	Pristane induced arthritis QTL 23	5.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	131730738	167139601	Rat
61362	Oia2	Oil induced arthritis QTL 2		0.001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	138503169	173369699	Rat
70201	Gcr1	Gastric cancer resistance QTL 1	2.7		stomach morphology trait (VT:0000470)	stomach tumor susceptibility score (CMO:0002043)	4	120260281	147278687	Rat
70200	Alc18	Alcohol consumption QTL 18	9.2		drinking behavior trait (VT:0001422)	ethanol intake volume to total fluid intake volume ratio (CMO:0001591)	4	56647873	149491524	Rat
2293659	Bmd35	Bone mineral density QTL 35	4.5	0.0001	femur strength trait (VT:0010010)	femoral neck ultimate force (CMO:0001703)	4	137755016	181392681	Rat
1331759	Hrtrt13	Heart rate QTL 13	3.54628		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	4	110275411	168266883	Rat
724535	Cm18	Cardiac mass QTL 18	2.6		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	4	118856416	163856416	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	11320076	180699135	Rat
6478754	Anxrr43	Anxiety related response QTL 43		0.14035	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	144639524	182687754	Rat
2302049	Pia32	Pristane induced arthritis QTL 32	5.1	0.001	blood autoantibody amount (VT:0003725)	serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)	4	105789505	150789505	Rat
724558	Plsm2	Polydactyly-luxate syndrome (PLS) morphotypes QTL 2		0.0003	hindlimb integrity trait (VT:0010563)	hind foot phalanges count (CMO:0001949)	4	132422778	177422778	Rat
6478763	Anxrr46	Anxiety related response QTL 46		0.07428	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	110870972	155870972	Rat
6478760	Anxrr45	Anxiety related response QTL 45		0.06717	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	110870972	155870972	Rat
1331802	Srn5	Serum renin concentration QTL 5	3.045		renin activity (VT:0005581)	plasma renin activity level (CMO:0000116)	4	119428175	157578333	Rat
1298524	Oia8	Oil induced arthritis QTL 8			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	138503169	173369699	Rat
738009	Sach4	Saccharine consumption QTL 4	4.9	0.000016	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	4	59948935	154902892	Rat
2312567	Glom19	Glomerulus QTL 19	1.9	0.006	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	4	45456990	146803430	Rat
7207480	Bss105	Bone structure and strength QTL 105	8.1		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	4	109827074	154827074	Rat
634335	Anxrr16	Anxiety related response QTL 16	7.22		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	4	93308457	167139447	Rat
6478778	Anxrr51	Anxiety related response QTL 51		0.25384	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	4	124778595	169778595	Rat
61406	Scwia1	Streptococcal cell wall induced arthritis QTL 1	2.3		joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	4	106805662	151805662	Rat
631511	Pia7	Pristane induced arthritis QTL 7	4.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	131730738	167139601	Rat
1354612	Foco1	Food consumption QTL 1	8.87		eating behavior trait (VT:0001431)	food intake rate (CMO:0000427)	4	44463908	148090542	Rat
634347	Hcar8	Hepatocarcinoma resistance QTL 8	5.8		liver integrity trait (VT:0010547)	liver tumorous lesion area to total liver area ratio (CMO:0001075)	4	123143783	168143783	Rat
2303168	Bp330	Blood pressure QTL 330	4.25	0.017	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	5214602	146446691	Rat
738031	Alc14	Alcohol consumption QTL 14	7.6	0.00003	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	59948935	154902892	Rat
1576316	Ept5	Estrogen-induced pituitary tumorigenesis QTL 5	3.8		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	4	83428419	177635233	Rat
1576305	Emca6	Estrogen-induced mammary cancer QTL 6	5.8		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	4	44463720	155883716	Rat
738016	Alc16	Alcohol consumption QTL 16	3.6	0.00015	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	59948935	154902892	Rat
1358202	Gluco11	Glucose level QTL 11	2.4	0.02	adipocyte glucose uptake trait (VT:0004185)	absolute change in adipocyte glucose uptake (CMO:0000873)	4	85379421	167139601	Rat
61422	Cia13	Collagen induced arthritis QTL 13	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	132642577	167139601	Rat
631674	Iddm14	Insulin dependent diabetes mellitus QTL 14			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	4	64528739	157573521	Rat
2293840	Kiddil9	Kidney dilation QTL 9	2.9		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	4	120926564	148090731	Rat
12798519	Anxrr54	Anxiety related response QTL 54	2.54	0.05	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	114627026	159627026	Rat
12798523	Anxrr56	Anxiety related response QTL 56	2.83	0.05	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	85253748	150276390	Rat
61434	Cia3	Collagen induced arthritis QTL 3	4.8		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	103194656	148194656	Rat
12798527	Anxrr58	Anxiety related response QTL 58	4.11	0.05	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	119463257	147278687	Rat
6478748	Anxrr42	Anxiety related response QTL 42		0.28008	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	144639524	182687754	Rat

Markers in Region

RH130204

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	146,208,155 - 146,208,339 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	145,008,518 - 145,008,701	NCBI	Rnor6.0
Rnor_5.0	4	208,306,875 - 208,307,058	UniSTS	Rnor5.0
RGSC_v3.4	4	148,940,729 - 148,940,912	UniSTS	RGSC3.4
Celera	4	134,767,348 - 134,767,531	UniSTS
RH 3.4 Map	4	936.9	UniSTS
Cytogenetic Map	4	q42	UniSTS

RH144639

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	146,175,896 - 146,176,094 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	144,976,104 - 144,976,301	NCBI	Rnor6.0
Rnor_5.0	4	208,274,461 - 208,274,658	UniSTS	Rnor5.0
RGSC_v3.4	4	148,908,473 - 148,908,670	UniSTS	RGSC3.4
Celera	4	134,735,158 - 134,735,355	UniSTS
RH 3.4 Map	4	934.4	UniSTS
Cytogenetic Map	4	q42	UniSTS

BE101491

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	146,184,331 - 146,184,494 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	144,984,694 - 144,984,856	NCBI	Rnor6.0
Rnor_5.0	4	208,283,051 - 208,283,213	UniSTS	Rnor5.0
RGSC_v3.4	4	148,916,905 - 148,917,067	UniSTS	RGSC3.4
Celera	4	134,743,523 - 134,743,685	UniSTS
RH 3.4 Map	4	934.4	UniSTS
Cytogenetic Map	4	q42	UniSTS

BF394964

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	146,153,840 - 146,153,965 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	144,954,051 - 144,954,175	NCBI	Rnor6.0
Rnor_5.0	4	208,252,408 - 208,252,532	UniSTS	Rnor5.0
RGSC_v3.4	4	148,883,431 - 148,883,555	UniSTS	RGSC3.4
Celera	4	134,718,894 - 134,719,018	UniSTS
RH 3.4 Map	4	934.4	UniSTS
Cytogenetic Map	4	q42	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001170546	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001170547	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001170548	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237049	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286569	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC166466	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB800288	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473957	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FM092153	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FM120112	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ230082	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000009464 ⟹ ENSRNOP00000009464

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	146,185,510 - 146,208,456 (+)	Ensembl
Rnor_6.0 Ensembl	4	144,985,880 - 145,008,831 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000105716 ⟹ ENSRNOP00000086777

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	146,185,503 - 146,211,246 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000111842 ⟹ ENSRNOP00000089723

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	146,186,126 - 146,211,246 (+)	Ensembl

RefSeq Acc Id:

NM_001170546 ⟹ NP_001164017

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	147,741,300 - 147,764,254 (+)	NCBI
mRatBN7.2	4	146,185,518 - 146,208,472 (+)	NCBI
Rnor_6.0	4	144,985,880 - 145,008,834 (+)	NCBI
Rnor_5.0	4	208,284,202 - 208,308,521 (+)	NCBI
Celera	4	134,744,709 - 134,767,664 (+)	NCBI

Sequence:

show sequence

GCCCTGAGCGCGCTGAACCCGCAGGTGCGGTGACCGGAAGGGTCTGTGCTTGCAGCGGAAACCG
TTAGACCTTTTAGAAACATTTCCATCATGTCTGACACTCAAGAAGCTACCAGAGAACACTTGGA
TATGAACCTTCATGAGAACAAGAAGCCGGTGCCCTTGATAGAAAGTGGCATCAGAAGTGAGTCT
GAGCATCTCCAAGTCACCATTGGAGCCACTGTACCTACTGGGTTTGAGCAAACAGCTGCAGATG
AAGTGAGAGAGAAATTGAAGTCATCCTGCAGAATCAGCAAAGACCGGGGCAAGATATATTTTGA
TATTGCAGTGGAAAGTCTGGCTCAGGTTCATTGTCTGAGATCAGTGGATAACTTGTTTGTGGTT
GTTGAGGAGTTTAAAGATTACCAGTTCAAAGCTACAAAGGAAGAAGTTCTAAGAGACTTTGAAG
AACTGGCTGGAAAACTCCCATGGTCGGACCCTTTAAAAGTCTGGCAAATTAACACCACTTTCAA
GAAGAAGAAGGCAAAGCGCAGAAAGGCCAATCAGAGTGCAGGCAGAGAGAAGGCCGACTGTGGA
CAGGGCGACAATGCCGGTGAGAAGGACGGTAAGAAGAAGCTTGCCAGTGGTGCGGCAGATCCAC
ATATCTTAGACTACTATGAAAATCCAGCCATCAAAGAAGAGATATCAACCTTAATAGGGGAAGT
CTTGGCATCTGGCGAAGATGAAAACGGTCAAAGCTTAAGAGAAGAAGCTGAACCGCAAGTGCAG
AAGTTCAGAGTCACCTGCAACAGAGCAGGAGAGAAGCATTGCTTTACATCCAACGAGGCTGCCA
GAGGTTTTGGAGGTGCTGTTCAAGAGTACTTTAAGTGGAAGGCTGATATGACCAACTTTGACGT
AGAGGTTCTCCTGAACATCCACAATAATGAAGTCATTGTTGCTATTGCACTGACAGAGGAGAGT
CTCCATCGCAGAAATATTACACATTTTGGACCTACAACTCTTAGGTCAACTCTTGCCTATGGGA
TGCTCAGGCTCTGTGAACCTAAACCTACTGATGTAATTGTAGATCCAATGTGTGGAACAGGGGC
AATACCAATAGAGGGGGCTACTGAGTGGTCTCACTGTTACCATATTGCTGGGGACAACAACCCA
CTGGCAGTGAACAGAGCAGCAAATAACATCTCATCTCTATTGACTAAGAGCCAGATTAAAGATG
GAAAAACATCCTGGGGTTTGCCCATTGATGCTGTTCAGTGGGATATCTGCAACCTCCCTCTGCG
AACTGCTTCTGTGGATATTATTGTAACAGACATGCCATTTGGAAAAAGGATGGGCTCCAAAAAG
AGAAATTGGAATCTCTATCCAGCTTGCCTTCGGGAAATGAGCCGTGTCTGTAGACCAAGGACAG
GTAGAGCTGTACTGCTTACTCAGGACAAGAAATGTTTTACCAAGGCATTATCTGGAATGGGACA
TGTGTGGCGAAAGGTCCATACAGTCTGGGTGAACATCGGGGGCCTTCATGCTGCAGTTTATCTT
CTAAAACGCACTCCTCAAGACTTTGTTCATCCTTCAGATCAAGATGGAGGAAAAGACCCTCCTT
GGTAAAGCAAAGAATGAAGACAATTTAGCAGTACTTAACAGTTCCTAACACTGGAAACGTCAGC
ATAAAGAACTTGCTTTGGGAGAAAAATAACAGAAAAGTAACCAAGTATTACAGCTTCCACTGCT
GAACTACTGTAGAATGCATTAGTGTTAGCAAGGTGATTGTAATGGTATTTCTTGAGAAGCCTAC
ACTGCTTGGTTTCTAAGTTTCAGAACACTTTAGGCCATATTCTATTGCTTGTGCAGCCTACTGT
TCTTGGTCTAAAGTTTTTTCACTTTACATGGATCATCTCAAATATCTCAGAAACTGGAGCATCC
CTGAAGACCTACAGTTTATCATCTACCTTAAAATAAATACATTACAACCTGAAGAGGACAAAAA
AAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001170547 ⟹ NP_001164018

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	147,741,309 - 147,764,254 (+)	NCBI
mRatBN7.2	4	146,185,527 - 146,208,472 (+)	NCBI
Rnor_6.0	4	144,985,889 - 145,008,834 (+)	NCBI
Rnor_5.0	4	208,284,202 - 208,308,521 (+)	NCBI
Celera	4	134,744,718 - 134,767,664 (+)	NCBI

Sequence:

show sequence

GCGCTGAACCCGCAGGTGCGGTGACCGGAAGGAAACCGTTAGACCTTTTAGAAACATTTCCATC
ATGTCTGACACTCAAGAAGCTACCAGAGAACACTTGGATATGAACCTTCATGAGAACAAGAAGC
CGGTGCCCTTGATAGAAAGTGGCATCAGAAGTGAGTCTGAGCATCTCCAAGTCACCATTGGAGC
CACTGTACCTACTGGGTTTGAGCAAACAGCTGCAGATGAAGTGAGAGAGAAATTGAAGTCATCC
TGCAGAATCAGCAAAGACCGGGGCAAGATATATTTTGATATTGCAGTGGAAAGTCTGGCTCAGG
TTCATTGTCTGAGATCAGTGGATAACTTGTTTGTGGTTGTTGAGGAGTTTAAAGATTACCAGTT
CAAAGCTACAAAGGAAGAAGTTCTAAGAGACTTTGAAGAACTGGCTGGAAAACTCCCATGGTCG
GACCCTTTAAAAGTCTGGCAAATTAACACCACTTTCAAGAAGAAGAAGGCAAAGCGCAGAAAGG
CCAATCAGAGTGCAGGCAGAGAGAAGGCCGACTGTGGACAGGGCGACAATGCCGGTGAGAAGGA
CGGTAAGAAGAAGCTTGCCAGTGGTGCGGCAGATCCACATATCTTAGACTACTATGAAAATCCA
GCCATCAAAGAAGAGATATCAACCTTAATAGGGGAAGTCTTGGCATCTGGCGAAGATGAAAACG
GTCAAAGCTTAAGAGAAGAAGCTGAACCGCAAGTGCAGAAGTTCAGAGTCACCTGCAACAGAGC
AGGAGAGAAGCATTGCTTTACATCCAACGAGGCTGCCAGAGGTTTTGGAGGTGCTGTTCAAGAG
TACTTTAAGTGGAAGGCTGATATGACCAACTTTGACGTAGAGGTTCTCCTGAACATCCACAATA
ATGAAGTCATTGTTGCTATTGCACTGACAGAGGAGAGTCTCCATCGCAGAAATATTACACATTT
TGGACCTACAACTCTTAGGTCAACTCTTGCCTATGGGATGCTCAGGCTCTGTGAACCTAAACCT
ACTGATGTAATTGTAGATCCAATGTGTGGAACAGGGGCAATACCAATAGAGGGGGCTACTGAGT
GGTCTCACTGTTACCATATTGCTGGGGACAACAACCCACTGGCAGTGAACAGAGCAGCAAATAA
CATCTCATCTCTATTGACTAAGAGCCAGATTAAAGATGGAAAAACATCCTGGGGTTTGCCCATT
GATGCTGTTCAGTGGGATATCTGCAACCTCCCTCTGCGAACTGCTTCTGTGGATATTATTGTAA
CAGACATGCCATTTGGAAAAAGGATGGGCTCCAAAAAGAGAAATTGGAATCTCTATCCAGCTTG
CCTTCGGGAAATGAGCCGTGTCTGTAGACCAAGGACAGGTAGAGCTGTACTGCTTACTCAGGAC
AAGAAATGTTTTACCAAGGCATTATCTGGAATGGGACATGTGTGGCGAAAGGTCCATACAGTCT
GGGTGAACATCGGGGGCCTTCATGCTGCAGTTTATCTTCTAAAACGCACTCCTCAAGACTTTGT
TCATCCTTCAGATCAAGATGGAGGAAAAGACCCTCCTTGGTAAAGCAAAGAATGAAGACAATTT
AGCAGTACTTAACAGTTCCTAACACTGGAAACGTCAGCATAAAGAACTTGCTTTGGGAGAAAAA
TAACAGAAAAGTAACCAAGTATTACAGCTTCCACTGCTGAACTACTGTAGAATGCATTAGTGTT
AGCAAGGTGATTGTAATGGTATTTCTTGAGAAGCCTACACTGCTTGGTTTCTAAGTTTCAGAAC
ACTTTAGGCCATATTCTATTGCTTGTGCAGCCTACTGTTCTTGGTCTAAAGTTTTTTCACTTTA
CATGGATCATCTCAAATATCTCAGAAACTGGAGCATCCCTGAAGACCTACAGTTTATCATCTAC
CTTAAAATAAATACATTACAACCTGAAGAGGACAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001170548 ⟹ NP_001164019

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	147,741,288 - 147,764,254 (+)	NCBI
mRatBN7.2	4	146,185,506 - 146,208,472 (+)	NCBI
Rnor_6.0	4	144,985,868 - 145,008,834 (+)	NCBI
Rnor_5.0	4	208,284,202 - 208,308,521 (+)	NCBI
Celera	4	134,744,697 - 134,767,664 (+)	NCBI

Sequence:

show sequence

TTCCGGCGGCGTGCCCTGAGCGCGCTGAACCCGCAGAAACCGTTAGACCTTTTAGAAACATTTC
CATCATGTCTGACACTCAAGAAGCTACCAGAGAACACTTGGATATGAACCTTCATGAGAACAAG
AAGCCGGTGCCCTTGATAGAAAGTGGCATCAGAAGTGAGTCTGAGCATCTCCAAGTCACCATTG
GAGCCACTGTACCTACTGGGTTTGAGCAAACAGCTGCAGATGAAGTGAGAGAGAAATTGAAGTC
ATCCTGCAGAATCAGCAAAGACCGGGGCAAGATATATTTTGATATTGCAGTGGAAAGTCTGGCT
CAGGTTCATTGTCTGAGATCAGTGGATAACTTGTTTGTGGTTGTTGAGGAGTTTAAAGATTACC
AGTTCAAAGCTACAAAGGAAGAAGTTCTAAGAGACTTTGAAGAACTGGCTGGAAAACTCCCATG
GTCGGACCCTTTAAAAGTCTGGCAAATTAACACCACTTTCAAGAAGAAGAAGGCAAAGCGCAGA
AAGGCCAATCAGAGTGCAGGCAGAGAGAAGGCCGACTGTGGACAGGGCGACAATGCCGGTGAGA
AGGACGGTAAGAAGAAGCTTGCCAGTGGTGCGGCAGATCCACATATCTTAGACTACTATGAAAA
TCCAGCCATCAAAGAAGAGATATCAACCTTAATAGGGGAAGTCTTGGCATCTGGCGAAGATGAA
AACGGTCAAAGCTTAAGAGAAGAAGCTGAACCGCAAGTGCAGAAGTTCAGAGTCACCTGCAACA
GAGCAGGAGAGAAGCATTGCTTTACATCCAACGAGGCTGCCAGAGGTTTTGGAGGTGCTGTTCA
AGAGTACTTTAAGTGGAAGGCTGATATGACCAACTTTGACGTAGAGGTTCTCCTGAACATCCAC
AATAATGAAGTCATTGTTGCTATTGCACTGACAGAGGAGAGTCTCCATCGCAGAAATATTACAC
ATTTTGGACCTACAACTCTTAGGTCAACTCTTGCCTATGGGATGCTCAGGCTCTGTGAACCTAA
ACCTACTGATGTAATTGTAGATCCAATGTGTGGAACAGGGGCAATACCAATAGAGGGGGCTACT
GAGTGGTCTCACTGTTACCATATTGCTGGGGACAACAACCCACTGGCAGTGAACAGAGCAGCAA
ATAACATCTCATCTCTATTGACTAAGAGCCAGATTAAAGATGGAAAAACATCCTGGGGTTTGCC
CATTGATGCTGTTCAGTGGGATATCTGCAACCTCCCTCTGCGAACTGCTTCTGTGGATATTATT
GTAACAGACATGCCATTTGGAAAAAGGATGGGCTCCAAAAAGAGAAATTGGAATCTCTATCCAG
CTTGCCTTCGGGAAATGAGCCGTGTCTGTAGACCAAGGACAGGTAGAGCTGTACTGCTTACTCA
GGACAAGAAATGTTTTACCAAGGCATTATCTGGAATGGGACATGTGTGGCGAAAGGTCCATACA
GTCTGGGTGAACATCGGGGGCCTTCATGCTGCAGTTTATCTTCTAAAACGCACTCCTCAAGACT
TTGTTCATCCTTCAGATCAAGATGGAGGAAAAGACCCTCCTTGGTAAAGCAAAGAATGAAGACA
ATTTAGCAGTACTTAACAGTTCCTAACACTGGAAACGTCAGCATAAAGAACTTGCTTTGGGAGA
AAAATAACAGAAAAGTAACCAAGTATTACAGCTTCCACTGCTGAACTACTGTAGAATGCATTAG
TGTTAGCAAGGTGATTGTAATGGTATTTCTTGAGAAGCCTACACTGCTTGGTTTCTAAGTTTCA
GAACACTTTAGGCCATATTCTATTGCTTGTGCAGCCTACTGTTCTTGGTCTAAAGTTTTTTCAC
TTTACATGGATCATCTCAAATATCTCAGAAACTGGAGCATCCCTGAAGACCTACAGTTTATCAT
CTACCTTAAAATAAATACATTACAACCTGAAGAGGACAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006237049 ⟹ XP_006237111

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	147,741,354 - 147,764,254 (+)	NCBI
mRatBN7.2	4	146,185,611 - 146,209,802 (+)	NCBI
Rnor_6.0	4	144,985,978 - 145,010,164 (+)	NCBI
Rnor_5.0	4	208,284,202 - 208,308,521 (+)	NCBI

Sequence:

show sequence

GAGGGGAGGACAGCAACAGTTTTATGTAGGTCGGTGCCAGGATGGAGTGTCTGGCCTCTGGCTG
GCTTCACCGAGGATGGGAGTGAGAAGCACATTTCCCTCCAGTCCGCACAATCCTCCTACCTGTC
TGTAGGAGTTCCATTCACAGTGGTGAACAGTGACACAGTGTAATCGCCTTAACCTCTGTGTCCT
GTCTTTTGCACAGCATAGGGACAGAGAAGATGTTAGCTTAAGTCACAACGCTTTTGAAAATCTA
GTGGGAGGTGTGGACCCTCCATCACGGTAACACCTATCCAGCCCCTTCGACCTACATACACATT
CATACAGGAAGACCGTTTTACTAGCTTCAGATATTTCCAAGATCTCCCCGGAATGCACATTATT
GGATCTCAGCATCGCCATGTAAAACCGTTAGACCTTTTAGAAACATTTCCATCATGTCTGACAC
TCAAGAAGCTACCAGAGAACACTTGGATATGAACCTTCATGAGAACAAGAAGCCGGTGCCCTTG
ATAGAAAGTGGCATCAGAAGTGAGTCTGAGCATCTCCAAGTCACCATTGGAGCCACTGTACCTA
CTGGGTTTGAGCAAACAGCTGCAGATGAAGTGAGAGAGAAATTGAAGTCATCCTGCAGAATCAG
CAAAGACCGGGGCAAGATATATTTTGATATTGCAGTGGAAAGTCTGGCTCAGGTTCATTGTCTG
AGATCAGTGGATAACTTGTTTGTGGTTGTTGAGGAGTTTAAAGATTACCAGTTCAAAGCTACAA
AGGAAGAAGTTCTAAGAGACTTTGAAGAACTGGCTGGAAAACTCCCATGGTCGGACCCTTTAAA
AGTCTGGCAAATTAACACCACTTTCAAGAAGAAGAAGGCAAAGCGCAGAAAGGCCAATCAGAGT
GCAGGCAGAGAGAAGGCCGACTGTGGACAGGGCGACAATGCCGGTGAGAAGGACGGTAAGAAGA
AGCTTGCCAGTGGTGCGGCAGATCCACATATCTTAGACTACTATGAAAATCCAGCCATCAAAGA
AGAGATATCAACCTTAATAGGGGAAGTCTTGGCATCTGGCGAAGATGAAAACGGTCAAAGCTTA
AGAGAAGAAGCTGAACCGCAAGTGCAGAAGTTCAGAGTCACCTGCAACAGAGCAGGAGAGAAGC
ATTGCTTTACATCCAACGAGGCTGCCAGAGGTTTTGGAGGTGCTGTTCAAGAGTACTTTAAGTG
GAAGGCTGATATGACCAACTTTGACGTAGAGGTTCTCCTGAACATCCACAATAATGAAGTCATT
GTTGCTATTGCACTGACAGAGGAGAGTCTCCATCGCAGAAATATTACACATTTTGGACCTACAA
CTCTTAGGTCAACTCTTGCCTATGGGATGCTCAGGCTCTGTGAACCTAAACCTACTGATGTAAT
TGTAGATCCAATGTGTGGAACAGGGGCAATACCAATAGAGGGGGCTACTGAGTGGTCTCACTGT
TACCATATTGCTGGGGACAACAACCCACTGGCAGTGAACAGAGCAGCAAATAACATCTCATCTC
TATTGACTAAGAGCCAGATTAAAGATGGAAAAACATCCTGGGGTTTGCCCATTGATGCTGTTCA
GTGGGATATCTGCAACCTCCCTCTGCGAACTGCTTCTGTGGATATTATTGTAACAGACATGCCA
TTTGGAAAAAGGATGGGCTCCAAAAAGAGAAATTGGAATCTCTATCCAGCTTGCCTTCGGGAAA
TGAGCCGTGTCTGTAGACCAAGGACAGGTAGAGCTGTACTGCTTACTCAGGACAAGAAATGTTT
TACCAAGGCATTATCTGGAATGGGACATGTGTGGCGAAAGGTCCATACAGTCTGGGTGAACATC
GGGGGCCTTCATGCTGCAGTTTATCTTCTAAAACGCACTCCTCAAGACTTTGTTCATCCTTCAG
ATCAAGATGGAGGAAAAGACCCTCCTTGGTAAAGCAAAGAATGAAGACAATTTAGCAGTACTTA
ACAGTTCCTAACACTGGAAACGTCAGCATAAAGAACTTGCTTTGGGAGAAAAATAACAGAAAAG
TAACCAAGTATTACAGCTTCCACTGCTGAACTACTGTAGAATGCATTAGTGTTAGCAAGGTGAT
TGTAATGGTATTTCTTGAGAAGCCTACACTGCTTGGTTTCTAAGTTTCAGAACACTTTAGGCCA
TATTCTATTGCTTGTGCAGCCTACTGTTCTTGGTCTAAAGTTTTTTCACTTTACATGGATCATC
TCAAATATCTCAGAAACTGGAGCATCCCTGAAGACCTACAGTTTATCATCTACCTTAAAATAAA
TACATTACAACCTGAAGAGGACAAAGATGCTCTGTGTGACTATAGTCTTTGGGGGTGGGGGAAG
CTATCTATTTTTAAATGAAAATGTAAGCTGCACAGCTTACTCAGGACAAGAAATGTTTTGCCAA
GGTACCACACAAGAGAGAAGATCACCTCCCTGTTTGTGCACAATATGTAGGTCTGGTGCCCTCA
ACAGGTGGGTGTTGGATGGACCTCCTGACTTACAAGTCCTGTTATTCCTGCCTAGCTCATTGTT
CTGTTGTTCTCTTGTACTGATTCTCCCTCAGATAGTTCTATGGGAAATGAAATAGCTACATTAC
TTATCAGTTCATTAACAGTGCCTCCTAAAGCAATCCCTGTTTGAGCTTTACAGAAAGTCATTTT
GGAGTCTGGCTTCTTTCAGCTTAGATTTTCAATGTGATGTTTCTATTTAGAGTAAAGGACACTG
ACAGTACTTCTTTGAGAACAGAATCCACATTGGCACCATATAGTCAGTACCCAGTGGCTTTTTG
GAACAACTCACTGGAGAATGAACTGGGATTATGAAAGCTTTAAGGTTTTTACACTTTACATGGA
CAATTTTGTGGTTGACAAAAATAATTATTGATTGAACATAAACTTAAATTTCCATCTTTGACAA
AAGAAATCATTTAAACCTCAAACCAAGGTAACACAGAAGCAAGATGTACAATGATGGTTGTCTG
TTTTCATTATCATTTACCAATTTCCTGCAAGTAAGCATTTAATATTTACTGAACAAATGAACTA
CTTTTTATGCTAAGTTCTCAAGTTAATACACCAGGTTTGTGCTCTAATTCACCATATCCCTAAT
TCTATTAAGTATATAAAAAAATAGACTTAAGATACTACAAATACAGTGGACACTGTCATTTCCA
TCTCTTGATTGGTAAATTTTGCTATGGAAACAATAGGAAATAAGCTATGAATTTTTTCCTCCAG
ACAAGGTTTTGTCACATAGCATTGGCTGGCCTCTGCCAAGTGTTGGGAATTAAAGATATGCAAT
ACCACGCCAGGTGAAAGGCTTACTTTCAAATTGTTTGTGTGTAGGTGTGTGTACCAGCGCAGGC
GCCTGTGGAGGCTAAAGCTGGAGTTAATCGGCAGTCTAGGAGCTGCCTGGTGTGGGTGATGGCT
GTGAGTTCAAGTCCTCCACTAGAGCAGCCTGAGCTCCATGGTCACCTTTATTTCTTGGTTGTTT
TTTGTTGTTTTTTTGCATCAGGGTAAAGTTCCATTCTTGCTCTATAAGTTGTGAAGATGTTAGC
CACTTAAGACACCAAGTTCTTCCTACCTGCTTTCTGTTACCTACTAAAAGCAATACATACTTTT
CTCAAGTAAAA

hide sequence

RefSeq Acc Id:

XM_063286569 ⟹ XP_063142639

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	147,741,352 - 147,764,254 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001164017	(Get FASTA)	NCBI Sequence Viewer
	NP_001164018	(Get FASTA)	NCBI Sequence Viewer
	NP_001164019	(Get FASTA)	NCBI Sequence Viewer
	XP_006237111	(Get FASTA)	NCBI Sequence Viewer
	XP_063142639	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL91506	(Get FASTA)	NCBI Sequence Viewer
	EDL91507	(Get FASTA)	NCBI Sequence Viewer
	EDL91508	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000009464.6
	ENSRNOP00000086777.1
	ENSRNOP00000089723.1

RefSeq Acc Id:

NP_001164019 ⟸ NM_001170548

- UniProtKB:

D3ZSV7 (UniProtKB/TrEMBL), A0A8I6A2Z6 (UniProtKB/TrEMBL), A6IBN8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSDTQEATREHLDMNLHENKKPVPLIESGIRSESEHLQVTIGATVPTGFEQTAADEVREKLKSS
CRISKDRGKIYFDIAVESLAQVHCLRSVDNLFVVVEEFKDYQFKATKEEVLRDFEELAGKLPWS
DPLKVWQINTTFKKKKAKRRKANQSAGREKADCGQGDNAGEKDGKKKLASGAADPHILDYYENP
AIKEEISTLIGEVLASGEDENGQSLREEAEPQVQKFRVTCNRAGEKHCFTSNEAARGFGGAVQE
YFKWKADMTNFDVEVLLNIHNNEVIVAIALTEESLHRRNITHFGPTTLRSTLAYGMLRLCEPKP
TDVIVDPMCGTGAIPIEGATEWSHCYHIAGDNNPLAVNRAANNISSLLTKSQIKDGKTSWGLPI
DAVQWDICNLPLRTASVDIIVTDMPFGKRMGSKKRNWNLYPACLREMSRVCRPRTGRAVLLTQD
KKCFTKALSGMGHVWRKVHTVWVNIGGLHAAVYLLKRTPQDFVHPSDQDGGKDPPW

hide sequence

RefSeq Acc Id:

NP_001164017 ⟸ NM_001170546

- UniProtKB:

D3ZSV7 (UniProtKB/TrEMBL), A0A8I6A2Z6 (UniProtKB/TrEMBL), A6IBN8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSDTQEATREHLDMNLHENKKPVPLIESGIRSESEHLQVTIGATVPTGFEQTAADEVREKLKSS
CRISKDRGKIYFDIAVESLAQVHCLRSVDNLFVVVEEFKDYQFKATKEEVLRDFEELAGKLPWS
DPLKVWQINTTFKKKKAKRRKANQSAGREKADCGQGDNAGEKDGKKKLASGAADPHILDYYENP
AIKEEISTLIGEVLASGEDENGQSLREEAEPQVQKFRVTCNRAGEKHCFTSNEAARGFGGAVQE
YFKWKADMTNFDVEVLLNIHNNEVIVAIALTEESLHRRNITHFGPTTLRSTLAYGMLRLCEPKP
TDVIVDPMCGTGAIPIEGATEWSHCYHIAGDNNPLAVNRAANNISSLLTKSQIKDGKTSWGLPI
DAVQWDICNLPLRTASVDIIVTDMPFGKRMGSKKRNWNLYPACLREMSRVCRPRTGRAVLLTQD
KKCFTKALSGMGHVWRKVHTVWVNIGGLHAAVYLLKRTPQDFVHPSDQDGGKDPPW

hide sequence

RefSeq Acc Id:

NP_001164018 ⟸ NM_001170547

- UniProtKB:

D3ZSV7 (UniProtKB/TrEMBL), A0A8I6A2Z6 (UniProtKB/TrEMBL), A6IBN8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSDTQEATREHLDMNLHENKKPVPLIESGIRSESEHLQVTIGATVPTGFEQTAADEVREKLKSS
CRISKDRGKIYFDIAVESLAQVHCLRSVDNLFVVVEEFKDYQFKATKEEVLRDFEELAGKLPWS
DPLKVWQINTTFKKKKAKRRKANQSAGREKADCGQGDNAGEKDGKKKLASGAADPHILDYYENP
AIKEEISTLIGEVLASGEDENGQSLREEAEPQVQKFRVTCNRAGEKHCFTSNEAARGFGGAVQE
YFKWKADMTNFDVEVLLNIHNNEVIVAIALTEESLHRRNITHFGPTTLRSTLAYGMLRLCEPKP
TDVIVDPMCGTGAIPIEGATEWSHCYHIAGDNNPLAVNRAANNISSLLTKSQIKDGKTSWGLPI
DAVQWDICNLPLRTASVDIIVTDMPFGKRMGSKKRNWNLYPACLREMSRVCRPRTGRAVLLTQD
KKCFTKALSGMGHVWRKVHTVWVNIGGLHAAVYLLKRTPQDFVHPSDQDGGKDPPW

hide sequence

RefSeq Acc Id:	XP_006237111 ⟸ XM_006237049
- Peptide Label:	isoform X1
- UniProtKB:	D3ZSV7 (UniProtKB/TrEMBL), A0A8I6A2Z6 (UniProtKB/TrEMBL), A6IBN8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSDTQEATREHLDMNLHENKKPVPLIESGIRSESEHLQVTIGATVPTGFEQTAADEVREKLKSS CRISKDRGKIYFDIAVESLAQVHCLRSVDNLFVVVEEFKDYQFKATKEEVLRDFEELAGKLPWS DPLKVWQINTTFKKKKAKRRKANQSAGREKADCGQGDNAGEKDGKKKLASGAADPHILDYYENP AIKEEISTLIGEVLASGEDENGQSLREEAEPQVQKFRVTCNRAGEKHCFTSNEAARGFGGAVQE YFKWKADMTNFDVEVLLNIHNNEVIVAIALTEESLHRRNITHFGPTTLRSTLAYGMLRLCEPKP TDVIVDPMCGTGAIPIEGATEWSHCYHIAGDNNPLAVNRAANNISSLLTKSQIKDGKTSWGLPI DAVQWDICNLPLRTASVDIIVTDMPFGKRMGSKKRNWNLYPACLREMSRVCRPRTGRAVLLTQD KKCFTKALSGMGHVWRKVHTVWVNIGGLHAAVYLLKRTPQDFVHPSDQDGGKDPPW hide sequence

Ensembl Acc Id:

ENSRNOP00000009464 ⟸ ENSRNOT00000009464

Ensembl Acc Id:

ENSRNOP00000089723 ⟸ ENSRNOT00000111842

Ensembl Acc Id:

ENSRNOP00000086777 ⟸ ENSRNOT00000105716

RefSeq Acc Id:	XP_063142639 ⟸ XM_063286569
- Peptide Label:	isoform X2

Protein Domains

THUMP

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZSV7-F1-model_v2	AlphaFold	D3ZSV7	1-504	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693290

Promoter ID:

EPDNEW_R3814

Type:

initiation region

Name:

Thumpd3_1

Description:

THUMP domain containing 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	144,985,866 - 144,985,926	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1560852	AgrOrtholog
BioCyc Gene	G2FUF-43408	BioCyc
Ensembl Genes	ENSRNOG00000006941	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000009464.8	UniProtKB/TrEMBL
	ENSRNOT00000105716.1	UniProtKB/TrEMBL
	ENSRNOT00000111842.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.2130.30	UniProtKB/TrEMBL
	3.40.50.150	UniProtKB/TrEMBL
InterPro	RlmKL-like_Mtase_CS	UniProtKB/TrEMBL
	RNA_methylase	UniProtKB/TrEMBL
	SAM-dependent_MTases-like	UniProtKB/TrEMBL
	THUMP	UniProtKB/TrEMBL
KEGG Report	rno:500288	UniProtKB/TrEMBL
NCBI Gene	500288	ENTREZGENE
PANTHER	THUMP DOMAIN-CONTAINING	UniProtKB/TrEMBL
	THUMP DOMAIN-CONTAINING PROTEIN 3	UniProtKB/TrEMBL
Pfam	THUMP	UniProtKB/TrEMBL
	UPF0020	UniProtKB/TrEMBL
PhenoGen	Thumpd3	PhenoGen
PROSITE	THUMP	UniProtKB/TrEMBL
	UPF0020	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000006941	RatGTEx
SMART	THUMP	UniProtKB/TrEMBL
Superfamily-SCOP	SSF53335	UniProtKB/TrEMBL
	THUMP domain-like	UniProtKB/TrEMBL
UniProt	A0A8I6A2Z6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A8S0_RAT	UniProtKB/TrEMBL
	A6IBN8	ENTREZGENE, UniProtKB/TrEMBL
	D3ZSV7	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-02-28	Thumpd3	THUMP domain containing 3	RGD1560852_predicted	similar to THUMP domain containing 3 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1560852_predicted	similar to THUMP domain containing 3 (predicted)	LOC500288	similar to THUMP domain containing 3	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC500288	similar to THUMP domain containing 3			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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