Pitpnb-ps1 (phosphatidylinositol transfer protein, beta, pseudogene 1) - Rat Genome Database
Welcome
Sign In
Message Center
1 Messages
Go to Message Center
Watched Genes
Watched Ontology Terms
×
Save List to My RGD
Create Name:
Description:
You must be logged in to use this feature
Subscribe to Updates
Select categories you would like to watch. Updates to this gene will be sent to Sign In
Analyze List
×
Gene Annotator (Functional Annotation)
unavailable
Gene Annotator (Annotation Distribution)
unavailable
Variant Visualizer (Genomic Variants)
unavailable
InterViewer (Protein-Protein Interactions)
unavailable
Gviewer (Genome Viewer)
unavailable
Variant Visualizer (Damaging Variants)
unavailable
Gene Annotator (Annotation Comparison)
unavailable
OLGA (Gene List Generator)
unavailable
Excel (Download)
MOET (Multi-Ontology Enrichement)
unavailable
GOLF (Gene-Ortholog Location Finder)
unavailable
x
Send Message
x
Send us a Message
Your email
Message
Send
Submit Data
|
Help
|
Video Tutorials
|
News
|
Publications
|
Download
|
REST API
|
Citing RGD
|
Contact
Home
Search RGD
Grant Resources
Citing RGD
About Us
Contact Us
Data
Genes
Variants
Community Projects
QTLs
Strains
Markers
Genome Information
Ontologies
Cell Lines
References
Download
Submit Data
Analysis & Visualization
OntoMate (Literature Search)
JBrowse (Genome Browser)
Synteny Browser (VCMap)
Variant Visualizer
Multi-Ontology Enrichment (MOET)
Gene-Ortholog Location Finder (GOLF)
InterViewer (Protein-Protein Interactions)
PhenoMiner (Quatitative Phenotypes)
Gene Annotator
OLGA (Gene List Generator)
AllianceMine
GViewer (Genome Viewer)
Diseases
Aging & Age-Related Disease
Cancer & Neoplastic Disease
Cardiovascular Disease
Coronavirus Disease
Developmental Disease
Diabetes
Hematologic Disease
Immune & Inflammatory Disease
Infectious Disease
Liver Disease
Neurological Disease
Obesity & Metabolic Syndrome
Renal Disease
Respiratory Disease
Sensory Organ Disease
Phenotypes & Models
Find Models
Genetic Models
Autism Models
Rat PhenoMiner (Quantitative Phenotypes)
Chinchilla PhenoMiner
Expected Ranges (Quantitative Phenotype)
PhenoMiner Term Comparison
Hybrid Rat Diversity Panel
Phenotypes
Phenotypes in Other Animal Models
Animal Husbandry
Strain Medical Records
Phylogenetics
Strain Availability
Calendar
Rats 101
Submissions
Photo Archive
Pathways
Community
Rat Community Forum
Directory of Rat Laboratories
Video Tutorials
News
RGD Publications
RGD Presentations Archive
Nomenclature Guidelines
Resource Links
Laboratory Resources
Employment Resources
Advanced Search (OLGA)
Summary
References
Genomics
Variants
QTLs in Region (GRCr8)
Expression
RNA-SEQ Expression
Sequence
Nucleotide Sequences
Additional Information
External Database Links
Nomenclature History
Gene: Pitpnb-ps1 (phosphatidylinositol transfer protein, beta, pseudogene 1) Rattus norvegicus
Subscribe to Updates
Analyze
General
Array IDs
Symbol:
Pitpnb-ps1
Name:
phosphatidylinositol transfer protein, beta, pseudogene 1
RGD ID:
11386575
Description:
Type:
pseudo
RefSeq Status:
MODEL
Previously known as:
LOC108350880; phosphatidylinositol transfer protein beta isoform-like
Latest Assembly:
GRCr8 - GRCr8 Assembly
Position:
Rat Assembly
Chr
Position (strand)
Source
Genome Browsers
JBrowse
NCBI
UCSC
Ensembl
GRCr8
4
183,609,778 - 183,610,726 (-)
NCBI
GRCr8
mRatBN7.2
4
181,878,381 - 181,879,388 (-)
NCBI
mRatBN7.2
mRatBN7.2
Rnor_6.0
4
183,391,360 - 183,392,442 (-)
NCBI
Rnor6.0
Rnor_6.0
rn6
Rnor6.0
Celera
4
170,346,237 - 170,347,319 (-)
NCBI
Celera
Cytogenetic Map
4
q44
NCBI
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Annotation
Click to see Annotation Summary View
References
Genomics
.
Variants
.
Variants in Pitpnb-ps1
8 total Variants
QTLs in Region (GRCr8)
1 to 8 of 8 rows
10
20
30
40
100
All Rows
The following
QTLs
overlap with this region.
Full Report
CSV
TAB
Printer
Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
6478754
Anxrr43
Anxiety related response QTL 43
0.14035
locomotor behavior trait (VT:0001392)
distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)
4
144639524
182687754
Rat
6478693
Anxrr32
Anxiety related response QTL 32
0.00092
locomotor behavior trait (VT:0001392)
measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)
4
144639524
182687754
Rat
10401796
Kidm48
Kidney mass QTL 48
kidney mass (VT:0002707)
both kidneys wet weight (CMO:0000085)
4
145568712
182687754
Rat
6478718
Anxrr34
Anxiety related response QTL 34
0.00896
locomotor behavior trait (VT:0001392)
amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)
4
144639524
182687754
Rat
6478748
Anxrr42
Anxiety related response QTL 42
0.28008
locomotor behavior trait (VT:0001392)
amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)
4
144639524
182687754
Rat
6478700
Anxrr33
Anxiety related response QTL 33
0.00896
locomotor behavior trait (VT:0001392)
amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)
4
144639524
182687754
Rat
1300109
Rf13
Renal function QTL 13
3.91
renal blood flow trait (VT:2000006)
absolute change in renal blood flow rate (CMO:0001168)
4
157710145
182687754
Rat
10053718
Scort25
Serum corticosterone level QTL 25
2.15
0.0097
blood corticosterone amount (VT:0005345)
plasma corticosterone level (CMO:0001173)
4
155561574
182687754
Rat
1 to 8 of 8 rows
10
20
30
40
100
All Rows
Expression
RNA-SEQ Expression
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
Download All Expressed Objects for this Gene
Too many to show, limit is 500. Download them if you would like to view them all.
Strain/Cell Line
(Click to sort Ascending)
Sex
(Click to sort Ascending)
Age
(Click to sort Ascending)
Tissue
(Click to sort Ascending)
Geo Sample Id
(Click to sort Ascending)
Value
(Click to sort Ascending)
Unit
(Click to sort Ascending)
Assembly
(Click to sort Ascending)
Reference
(Click to sort Ascending)
Sequence
Nucleotide Sequences
1 to 1 of 1 rows
3
5
10
20
30
100
All Rows
GenBank Nucleotide
JAXUCZ010000004
(Get FASTA)
NCBI Sequence Viewer
Search GEO for Microarray Profiles
1 to 1 of 1 rows
3
5
10
20
30
100
All Rows
Additional Information
External Database Links
1 to 3 of 3 rows
3
5
10
20
40
100
All Rows
Database
Acc Id
Source(s)
BioCyc Gene
G2FUF-42372
BioCyc
NCBI Gene
LOC108350880
ENTREZGENE
PhenoGen
Pitpnb-ps1
PhenoGen
1 to 3 of 3 rows
3
5
10
20
40
100
All Rows
Nomenclature History
Date
Current Symbol
Current Name
Previous Symbol
Previous Name
Description
Reference
Status
2022-06-10
Pitpnb-ps1
phosphatidylinositol transfer protein, beta, pseudogene 1
LOC108350880
phosphatidylinositol transfer protein beta isoform-like
Symbol and Name Changed
1299863
APPROVED
2016-08-02
LOC108350880
phosphatidylinositol transfer protein beta isoform-like
Symbol and Name status set to provisional
70820
PROVISIONAL