LOC102554670 (uncharacterized LOC102554670) - Rat Genome Database

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Gene: LOC102554670 (uncharacterized LOC102554670) Rattus norvegicus
Analyze
Symbol: LOC102554670
Name: uncharacterized LOC102554670
RGD ID: 7574084
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84163,397,981 - 163,408,510 (+)NCBIGRCr8
mRatBN7.24161,711,959 - 161,722,625 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4161,711,971 - 161,722,983 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.04161,757,525 - 161,768,039 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04226,963,025 - 226,966,342 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera4150,413,337 - 150,423,845 (+)NCBICelera
Cytogenetic Map4q42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


PMID:16751776  



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Variants in LOC102554670
24 total Variants

1 to 10 of 35 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4144639524182687754Rat
724558Plsm2Polydactyly-luxate syndrome (PLS) morphotypes QTL 20.0003hindlimb integrity trait (VT:0010563)hind foot phalanges count (CMO:0001949)4132422778177422778Rat
1582237Kidm34Kidney mass QTL 3440.0001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)4148090542168069246Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4144639524182687754Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)426775591168368347Rat
631683Bp116Blood pressure QTL 1160.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4124303370169303370Rat
61451Ciaa4CIA Autoantibody QTL 43.1blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)4126395976167139601Rat
1331738Bp209Blood pressure QTL 2092.979arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)4138503169179293946Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
1298524Oia8Oil induced arthritis QTL 8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4138503169173369699Rat

1 to 10 of 35 rows






Ensembl Acc Id: ENSRNOT00000108634
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4161,711,971 - 161,722,983 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000112849
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4161,711,971 - 161,722,983 (+)Ensembl
RefSeq Acc Id: XR_005503973
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84163,397,987 - 163,408,510 (+)NCBI
mRatBN7.24161,711,965 - 161,722,622 (+)NCBI
RefSeq Acc Id: XR_005503974
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84163,397,981 - 163,408,510 (+)NCBI
mRatBN7.24161,711,959 - 161,722,625 (+)NCBI
RefSeq Acc Id: XR_353637
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84163,397,995 - 163,408,510 (+)NCBI
mRatBN7.24161,711,971 - 161,722,622 (+)NCBI
Rnor_6.04161,757,525 - 161,768,039 (+)NCBI
Rnor_5.04226,963,025 - 226,966,342 (+)NCBI
Sequence:

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



Database
Acc Id
Source(s)
BioCyc Gene G2FUF-42851 BioCyc
Ensembl Genes ENSRNOG00000064282 Ensembl
NCBI Gene LOC102554670 ENTREZGENE
PhenoGen LOC102554670 PhenoGen
RatGTEx ENSRNOG00000064282 RatGTEx
RNAcentral URS0000CCF913 RNACentral
  URS00022B3AA9 RNACentral
  URS00022B853F RNACentral


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-12-18 LOC102554670  uncharacterized LOC102554670      Symbol and Name status set to provisional 70820 PROVISIONAL