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Gene: Ppfibp1 (PPFIA binding protein 1) Rattus norvegicus

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Symbol:

Ppfibp1

Name:

PPFIA binding protein 1

RGD ID:

1310010

Description:

Predicted to be involved in cortical microtubule organization and neuromuscular junction development. Predicted to be located in cell cortex. Predicted to be active in presynaptic active zone. Orthologous to human PPFIBP1 (PPFIA binding protein 1); INTERACTS WITH 17beta-estradiol; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

liprin-beta-1; LOC312855; PTPRF interacting protein, binding protein 1; PTPRF interacting protein, binding protein 1 (liprin beta 1)

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PPFIBP1 (PPFIA binding protein 1)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther
Mus musculus (house mouse):	Ppfibp1 (PTPRF interacting protein, binding protein 1 (liprin beta 1))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ppfibp1 (PPFIB scaffold protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PPFIBP1 (PPFIB scaffold protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PPFIBP1 (PPFIA binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ppfibp1 (PPFIB scaffold protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PPFIBP1 (PPFIA binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	LOC103218783 (liprin-beta-1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ppfibp1 (PPFIB scaffold protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Ppfibp1 (PPFIB scaffold protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	PPFIBP1 (PPFIA binding protein 1)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ppfibp1 (PTPRF interacting protein, binding protein 1 (liprin beta 1))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ppfibp1 (PTPRF interacting protein, binding protein 1 (liprin beta 1))	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ppfibp1b (PTPRF interacting protein, binding protein 1b (liprin beta 1))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ppfibp1a (PTPRF interacting protein, binding protein 1a (liprin beta 1))	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	hlb-1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Liprin-beta	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Liprin-beta	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ppfibp1	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	ppfibp1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	181,538,249 - 181,682,079 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	181,539,450 - 181,682,076 (+)	Ensembl				GRCr8
mRatBN7.2	4	179,807,579 - 179,951,428 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	179,808,794 - 179,951,428 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	186,093,061 - 186,235,824 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	181,877,553 - 182,020,331 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	180,498,003 - 180,640,776 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	181,285,179 - 181,428,157 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	181,286,455 - 181,428,157 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	245,435,387 - 245,578,035 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	184,521,107 - 184,635,773 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	168,331,211 - 168,444,939 (+)	NCBI		Celera
RGSC_v3.1	4	184,747,916 - 184,879,253 (+)	NCBI
Cytogenetic Map	4	q44	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

epilepsy (ISO)

genetic disease (ISO)

intellectual disability (ISO)

Neurodevelopmental Disorder with Seizures, Microcephaly, and Brain Abnormalities (ISO)

pulmonary plasma cell granuloma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

(2,4,5-trichlorophenoxy)acetic acid (ISO)

1,1-dichloroethene (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP,ISO)

17beta-hydroxy-5alpha-androstan-3-one (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,6-dinitrotoluene (EXP)

2-hydroxypropanoic acid (ISO)

2-methylcholine (ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

3-phenylprop-2-enal (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

5-fluorouracil (ISO)

6-propyl-2-thiouracil (EXP)

8-Br-cAMP (ISO)

acrolein (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

amphetamine (EXP)

antirheumatic drug (ISO)

arsenite(3-) (ISO)

avobenzone (ISO)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

Butylbenzyl phthalate (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

calcitriol (ISO)

CGP 52608 (ISO)

chloroacetaldehyde (ISO)

cidofovir anhydrous (ISO)

cisplatin (ISO)

clodronic acid (ISO)

cocaine (ISO)

copper(II) sulfate (ISO)

coumarin (ISO)

cyclosporin A (ISO)

cylindrospermopsin (ISO)

dexamethasone (ISO)

dibutyl phthalate (EXP,ISO)

dichloroacetic acid (ISO)

dioxygen (ISO)

doxorubicin (ISO)

elemental selenium (ISO)

endosulfan (EXP)

epoxiconazole (ISO)

ethanol (ISO)

finasteride (EXP)

FR900359 (ISO)

genistein (ISO)

hydrogen peroxide (ISO)

ifosfamide (ISO)

indometacin (ISO)

inulin (ISO)

isoprenaline (ISO)

ivermectin (ISO)

metformin (EXP)

methapyrilene (EXP)

methotrexate (ISO)

methoxychlor (EXP)

methylmercury chloride (ISO)

nickel atom (ISO)

okadaic acid (ISO)

oxaliplatin (EXP)

ozone (ISO)

paracetamol (EXP,ISO)

pentachlorophenol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

potassium chromate (ISO)

progesterone (ISO)

rac-lactic acid (ISO)

rimonabant (ISO)

selenium atom (ISO)

sodium arsenite (ISO)

testosterone (ISO)

tetrachloromethane (ISO)

tetraphene (ISO)

thimerosal (ISO)

thiram (ISO)

titanium dioxide (ISO)

topotecan (EXP)

torcetrapib (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

urethane (ISO)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cortical microtubule organization (IEA,ISO)

neuromuscular junction development (IBA)

Cellular Component

cell cortex (IEA,ISO)

cytosol (IEA)

plasma membrane (IEA,ISO)

presynaptic active zone (IBA)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:21423176	PMID:25468996

Genomics

Comparative Map Data

Ppfibp1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	181,538,249 - 181,682,079 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	181,539,450 - 181,682,076 (+)	Ensembl				GRCr8
mRatBN7.2	4	179,807,579 - 179,951,428 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	179,808,794 - 179,951,428 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	186,093,061 - 186,235,824 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	181,877,553 - 182,020,331 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	180,498,003 - 180,640,776 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	181,285,179 - 181,428,157 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	181,286,455 - 181,428,157 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	245,435,387 - 245,578,035 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	184,521,107 - 184,635,773 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	168,331,211 - 168,444,939 (+)	NCBI		Celera
RGSC_v3.1	4	184,747,916 - 184,879,253 (+)	NCBI
Cytogenetic Map	4	q44	NCBI

PPFIBP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	27,524,206 - 27,695,564 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	27,523,431 - 27,695,565 (+)	Ensembl			hg38	GRCh38
GRCh37	12	27,677,139 - 27,848,497 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	27,568,312 - 27,739,763 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	12	27,568,311 - 27,692,165	NCBI
Celera	12	32,822,643 - 32,994,086 (+)	NCBI		Celera
Cytogenetic Map	12	p11.23-p11.22	NCBI
HuRef	12	27,445,920 - 27,617,349 (+)	NCBI		HuRef
CHM1_1	12	27,642,077 - 27,813,482 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	27,395,877 - 27,567,299 (+)	NCBI		T2T-CHM13v2.0

Ppfibp1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	146,788,107 - 146,933,523 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	146,789,985 - 146,933,523 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	6	146,886,609 - 147,032,025 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	146,888,487 - 147,032,025 (+)	Ensembl			mm10	GRCm38
MGSCv37	6	146,837,016 - 146,980,545 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	6	146,845,684 - 146,989,193 (+)	NCBI		MGSCv36	mm8
Celera	6	149,971,063 - 150,067,697 (+)	NCBI		Celera
Cytogenetic Map	6	G3	NCBI
cM Map	6	77.7	NCBI

Ppfibp1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955505	7,193,476 - 7,299,621 (-)	Ensembl
ChiLan1.0	NW_004955505	7,191,751 - 7,394,506 (-)	NCBI	ChiLan1.0	ChiLan1.0

PPFIBP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	69,118,465 - 69,290,459 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	69,114,862 - 69,286,156 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	58,616,002 - 58,787,280 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	61,234,873 - 61,406,076 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	61,234,873 - 61,296,894 (-)	Ensembl			panPan2	panpan1.1

PPFIBP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	20,030,927 - 20,198,006 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	20,032,643 - 20,123,563 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	26,311,035 - 26,367,646 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	20,224,797 - 20,391,943 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	20,224,794 - 20,391,976 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	20,033,148 - 20,089,732 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	20,059,842 - 20,116,926 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	26,467,995 - 26,524,612 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ppfibp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	81,992,350 - 82,170,672 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004937395	32,292 - 79,060 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004937395	28,813 - 79,109 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PPFIBP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	46,031,401 - 46,222,887 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	5	46,031,398 - 46,222,915 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	49,600,968 - 49,650,226 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LOC103218783
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	27,241,332 - 27,417,421 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	27,298,975 - 27,414,756 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666069	7,634,241 - 7,810,795 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ppfibp1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624935	392,351 - 523,832 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624935	392,353 - 594,642 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ppfibp1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	6	4,561,125 - 4,700,446 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Ppfibp1
918 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	156
Count of miRNA genes:	117
Interacting mature miRNAs:	129
Transcripts:	ENSRNOT00000044147
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
6478754	Anxrr43	Anxiety related response QTL 43		0.14035	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	146370897	184426481	Rat
6478720	Alc23	Alcohol consumption QTL 23		0.00509	drinking behavior trait (VT:0001422)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	155834926	184426481	Rat
6478785	Anxrr53	Anxiety related response QTL 53		0.01397	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
1581566	Eae21	Experimental allergic encephalomyelitis QTL 21	6.2		body mass (VT:0001259)	maximum body weight loss to initial body weight ratio (CMO:0001400)	4	137447185	182447185	Rat
6478757	Anxrr44	Anxiety related response QTL 44		0.01087	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
6478693	Anxrr32	Anxiety related response QTL 32		0.00092	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	4	146370897	184426481	Rat
1578674	Bmd12	Bone mineral density QTL 12	3.8		femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	4	137430611	182430611	Rat
6478728	Anxrr36	Anxiety related response QTL 36		0.01061	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
738016	Alc16	Alcohol consumption QTL 16	3.6	0.00015	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	184426481	Rat
6478700	Anxrr33	Anxiety related response QTL 33		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	146370897	184426481	Rat
1298524	Oia8	Oil induced arthritis QTL 8			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	140059299	184426481	Rat
6478733	Anxrr37	Anxiety related response QTL 37		0.00095	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
10053718	Scort25	Serum corticosterone level QTL 25	2.15	0.0097	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	157292416	184426481	Rat
738009	Sach4	Saccharine consumption QTL 4	4.9	0.000016	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	4	60916264	184426481	Rat
61362	Oia2	Oil induced arthritis QTL 2		0.001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	140059299	184426481	Rat
6478737	Anxrr38	Anxiety related response QTL 38		0.00159	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
2293659	Bmd35	Bone mineral density QTL 35	4.5	0.0001	femur strength trait (VT:0010010)	femoral neck ultimate force (CMO:0001703)	4	160623982	184426481	Rat
10401796	Kidm48	Kidney mass QTL 48			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	4	147299608	184426481	Rat
6478718	Anxrr34	Anxiety related response QTL 34		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	146370897	184426481	Rat
6478782	Anxrr52	Anxiety related response QTL 52		0.02091	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	12212457	182430611	Rat
1300109	Rf13	Renal function QTL 13	3.91		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	4	176806581	181925369	Rat
6478748	Anxrr42	Anxiety related response QTL 42		0.28008	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	146370897	184426481	Rat

Markers in Region

D4Got141

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	179,871,788 - 179,871,900 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	181,348,613 - 181,348,724	NCBI	Rnor6.0
Rnor_5.0	4	245,498,821 - 245,498,932	UniSTS	Rnor5.0
RGSC_v3.4	4	184,556,003 - 184,556,115	RGD	RGSC3.4
RGSC_v3.4	4	184,556,004 - 184,556,115	UniSTS	RGSC3.4
Celera	4	168,365,123 - 168,365,234	UniSTS
RGSC_v3.1	4	184,801,128 - 184,801,239	RGD
RH 3.4 Map	4	1083.9	RGD
RH 3.4 Map	4	1083.9	UniSTS
Cytogenetic Map	4	q44	UniSTS

RH130104

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	179,951,054 - 179,951,248 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	181,427,784 - 181,427,977	NCBI	Rnor6.0
Rnor_5.0	4	245,577,662 - 245,577,855	UniSTS	Rnor5.0
RGSC_v3.4	4	184,635,400 - 184,635,593	UniSTS	RGSC3.4
Celera	4	168,444,566 - 168,444,759	UniSTS
RH 3.4 Map	4	1088.8	UniSTS
Cytogenetic Map	4	q44	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001395638	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008763382	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592669	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592670	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592671	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592672	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592673	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592674	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592675	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107707	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107710	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107711	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107712	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107713	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107714	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107715	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107716	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107717	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107718	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107719	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286176	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286177	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286178	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286179	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286180	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286181	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286182	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286183	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286184	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286186	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286187	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286188	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286189	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473964	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000044147 ⟹ ENSRNOP00000039655

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	181,539,470 - 181,680,191 (+)	Ensembl
mRatBN7.2 Ensembl	4	179,808,794 - 179,949,538 (+)	Ensembl
Rnor_6.0 Ensembl	4	181,315,444 - 181,428,157 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000083633 ⟹ ENSRNOP00000074098

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	181,539,465 - 181,682,076 (+)	Ensembl
mRatBN7.2 Ensembl	4	179,808,847 - 179,951,428 (+)	Ensembl
Rnor_6.0 Ensembl	4	181,286,455 - 181,428,152 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000094198 ⟹ ENSRNOP00000093133

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	181,539,450 - 181,682,076 (+)	Ensembl
mRatBN7.2 Ensembl	4	179,808,800 - 179,951,401 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000098646 ⟹ ENSRNOP00000096890

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	181,539,450 - 181,682,076 (+)	Ensembl
mRatBN7.2 Ensembl	4	179,808,800 - 179,951,401 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000115987 ⟹ ENSRNOP00000097266

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	181,539,520 - 181,682,076 (+)	Ensembl
mRatBN7.2 Ensembl	4	179,808,847 - 179,950,245 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000170543 ⟹ ENSRNOP00000110979

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	181,539,477 - 181,682,076 (+)	Ensembl

RefSeq Acc Id:

NM_001395638 ⟹ NP_001382567

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	181,539,466 - 181,682,079 (+)	NCBI
mRatBN7.2	4	179,808,796 - 179,951,426 (+)	NCBI

RefSeq Acc Id:

XM_008763382 ⟹ XP_008761604

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	181,538,249 - 181,682,076 (+)	NCBI
mRatBN7.2	4	179,855,708 - 179,951,428 (+)	NCBI
Rnor_6.0	4	181,285,179 - 181,428,157 (+)	NCBI

Sequence:

show sequence

CCAAGAGGATTAGACAGCTGATATCCACCAGAGGTGCAAAAGCAGCCACGTGGTTGAGCGCCGC
CAGATGACCACGCGGAGCTAGGGTGGCCACGTCTGGGATCCCAGTCTACCTAGACTCTGCAAGT
CCTCAGTTTCTCCCGGACTGACCCCGGCCCGCGCTGCAGGGCAGGAGACCTCCGGGGCCTTTAC
TTTATAACCTCGCCGCCCACGTCCGCCCAGTCCACGACACAGAGGCGGTCTTTCGGGGTGGGCG
TCGCTTCCGACCCGGGAAGAGCAGCGACCAACCGCCCGGCTCTCCACAGCCCTTTATCCGCGCC
CTGCGGACCGCATCCGACCGGCCGCGCTCCCCACCGACGCCCACTCCCAGCTCTGCCCGGCTCC
GCCAGGAATGTGGGAGACCCGGCGGCGCCTCGGAGTGACCGCGCGCCCGGCCAATCAGCGAGCC
GCAGGAGCAAGGCCCTGCCCCCTCCGCCCCCAGGGCTGGTTCCCGCCGGGGGCGGGGCGGCGGG
CCGAGGAGGACCGAGGGGAGGCGGCACCTGGGCGGCGGTGATGTCAGCCGGGCGCTGTGCTCGG
GCCCCGGCTCCTGTCGCCGTGTAGGGCGCGGGGGCGGCCGCGACGGGAGCGGCGATCTGGCAGC
CGGGCGGGTGCCGGGAGGCGGAACTGCAACTTGTGGAGCTCGGCGGCCCTTCGCCTCAGTACCG
AACTTCTATGGATCAGTTTGCTAAGGACGTGCAAGATTGGGAGAGCTGAGAAATCAACGTTGAA
CCTGTTTTTTTCTTAAAAGTGAGTAGGCTTACCCCCACGGCCGTTCATTTCTGACATCCCTATG
CTGTAGTTAGCAGCCAGCACATCACACCGGAGAACTTACAGCCCCTCCTTCCTCGAAAGCATCT
AAACTCCAAGAGCATCGTGGTGAAAATGGCCATGTGCGGGTTCAGACGTGTCTCCACGGCAGTC
TGCCAGCCGGTCTTCATCTGGCACGGATCAAGCAGGACAGCACAGGCCTGGTAGCATACCAAAG
GCACCGCCCTCTTCCCTCTCAGGTTGAAGCTGGAATTTGCCCCTTTCGAGCAGGAAGATGATGA
GCGACGCTAGTGACATGCTGGCCGCGGCGCTGGAGCAGATGGACGGGATCATAGCAGGTTCTAA
AGCCTTGGAATATTCCAATGGGATCTTTGATTGTCAATCTCCCACCTCCCCATTTATGGGAAGC
TTGCGAGCTCTGCACCTTGTGGAAGACCTGCGTGGATTGCTGGAGATGATGGAAACGGATGAGA
AAGAAGGATTGAGATGCCAGATTCCAGACTCAACAGCTGAAATGCTGATTGAGTGGCTTCAAAA
TCAAATGACAAATGGACACCTACCTGGGAATGGAGATGTGTATCAAGAAAGGCTAGCACGGCTA
GAAAACGACAAGGAGTCCCTCGTTCTTCAGGTGAGCGTGTTGACAGACCAGGTGGAGGCTCAGG
GAGAGAAGATTCGGGATTTGGAGTTCTGTCTTGAAGAGCATAGAGAGAAGCTGAATGCCACTGA
AGAAATGCTGCAGCAGGAGCTTCTGAGTAGGACTTCCTTAGAGACACAGAAGCTGGAGCTGATG
GCTGAGATCTCTAACTTGAAGTTAAAACTGACCGCCGTAGAGAAGGACAGGCTGGATTATGAAG
ATAGGTTCAGAGACACAGAGGGGCTAATACAAGAGATCAATGATTTGAGGCTAAAAGTCAATGA
GATGGACAGTGAAAGACTTCAGTATGAAAAAAAGCTCAAGTCAACTAAATCTCTAATGGCCAAA
CTTTCTAGCATGAAAATCAAGGTGGGTCAGATGCAGTATGAAAAGCAGCGGATGGAGCAAAAGT
GGGAGACACTGAAGGATGAACTGGCGTCTTTAAAAGAGCAGCTGGAGGAGAAGGAGTGTGAAGT
GAAGAGACTGCAGGAGAGACTGGTTTGTAAGACGAAAGGAGAAGGGGTCGAAATCCTCGATCGA
GATGAAAATATTAAAAGGAAGCTCAAAGAGAAAAACATTGAAGTACAGAAAATGAAGAAGGCAG
TGGAGTCTCTGATGGCAGCAAACGAGGAAAAGGAGCGGAAAATAGAAGACCTCCGGCAGTGCCT
GAGCAGGTACAGGAAAGTGCAGGACCCAGCAGCTCTGGCCCAAGGCCAGGAGGGCGAGTGTGAG
GGCCTGTTCCACTCCAGTTCTATCTCCACCCTGTTGGACGCACAGGGCTTTAGTGATCTGGAGA
GAAGCACTTCTTCTACGCCAGGAATGGGGTCTCCCAGCAGGGACCCGCTCCACACCAGTGCCCC
AGAGGAGTTTCACACCAGCGTCCTCCAAGCTTCAGTTCCTTCGCTATTTCCGACATCTATGGAC
GAAGAAACCTGTGAGAAACCCAAGCTGGCTACTAAGCCTGAGACTTCGTTTGAAGAGGGTGATG
GAAGAGCAGTCCTCGGTGCTGACGCTGAAGTCTCCCTAAGTGATGGTGTCTCAACTTCGAGTCT
GCAGAAATCCAGTAGCCTTGGAAATCTGAAGAAAGAGACATCAGATGGCGTGGAAAAGGAGTCT
ATCCAGAAGCCTCCAGAGGATAAAACTCCGACCGACAGCCACACATTTGGGACCCTGCCTCCCA
AAGCTCCAGGACATGGCGCCTCTGTGGATGACAGCCCCTTTGGCACTCGAAAAGCCAGGTCTTC
CTTTGGCCGGGGCTTTTTCAAAATCAAAAGTGGGAAGAGGACAGCGAGTGCACCAAACCTCGAC
CGTAAACGAAGTGCCAGTGCACCCACCTTAGCTGAGACAGAAAAAGAGACAGATGAGCACCTAG
ATTTGGCTGGTACATCTCGGCCAAAAGGTTCACAGGGAACCAGTCCGTTCCAGATGTCGCCACC
ATCTCCAGATTCCAGAAAGAAATCCAGAGGCATCATGCGACTCTTTGGGAAACTTAGAAGAAGT
CAGTCAACTACATTCAACCCAGATGACATGTCTGAGCCTGAATTCAAAAGAGGAGGGACAAGGG
CAACTGCAGGACCCAGGCTTGGTTGGTCTCGAGATTTAGGACAGTCCAACAGTGACCTGGACAC
GCCGTTTGCAAAGTGGACCAAGGAGCAGGTGTGCAGCTGGCTGGCAGAACAAGGCCTGGGCTCC
TACCTGAGTTCCGGCAAGCATTGGATTATGTCTGGCCAGACGCTTTTGCAGGCTTCTCAGCAAG
ACCTAGAGAAGGAGCTTGGCATCAAGCACTCACTGCATCGAAAGAAGCTCCAGTTGGCCCTGCA
GGCCCTGGGATCTGAAGAAGAGACCAACTACGGAAAGCTAGACTTCAACTGGGTCACTAGATGG
CTGGATGATATTGGCCTCCCTCAGTACAAGACGCAGTTTGATGAGGGGCGGGTGGACGGCCGAA
TGCTACACTACATGACTGTGGATGACCTCCTGTCCCTGAAGGTTGTGAGTGTGCTGCACCATCT
CAGTATCAAAAGGGCCATCCAAGTCCTGAGGATCAATAACTTCGAGCCAAACTGTCTTCGGAGG
CGGCCGTCTGACGAGAACAGCATCACCCCATCTGAGGTTCAGCAGTGGACCAATCATCGTGTGA
TGGAGTGGCTGCGCTCTGTGGACTTGGCAGAATATGCCCCCAACCTCAGAGGCAGTGGTGTCCA
TGGAGGGCTCATGGTTCTTGAGCCTCGTTTTAACGTAGAAACTATGGCTCAGTTATTGAACATT
CCTCCAAACAAAACCTTGTTGCGCAGACATTTGGCTACCCATTTCAACCTTCTGATTGGTGCTG
AGGCCCAGCACCAGAAGCGAGATGCCATGGAGTTACCAGATTATGTCCTGCTAACAGCTACTGC
CAAAGTGAAGCCAAAGAAACTGACCTTTAGCAACTTTGGGAATCTGAGGAAGAAGAAACATGAA
GATGGGGAGGAGTATGTCTGTCCAATGGAGCTAGGCCAGGCGTCGGGTAGCTCCCAGAAGGGGT
TTAGACCTGGCTTGGACATGCGCCTGTATGAAGAGGATGATTTGGACCGGTTAGAGCAGATGGA
AGATTCAGAAGGGACGGTGAGACAGATAGGTGCGTTTTCTGAAGGCATCAACAATCTCACGCAC
ATGTTAAAGGAAGATGACATGTTTAAGGATTTTGCTGCCCGCTCCCCAAGTGCCAGCATCACAG
ATGAAGACTCCAACGTTTGAGCAGAGCACCTGGGCAAATGCCAGGAGCACACGTGTCATTTTCC
AGCTTTGTTTCTCGGATAGTGTATACAGCAGGTGACAGGTTGTGCATTGCTTATTGTTCGGACT
TCTGCTCGCTCAGAAGGAGAGCTATAGCACGGGAATGGTGCCAGTTCTGAGCATGTTGAGGAAA
AAGAGAGGCTGGTGAGCGAAAGTGCGCTTGCTCTGCCTCTGTTTAATGCGAAGTCTGCGACGTG
TGCTGTTGGAAGTGTTGCACGCACGGTTGCGTGTACCAGAGCGCCTCGCTCACATCTCCAGGAG
GGAGGCCTGGCCACATCAGTGTTCACTGCAGCCGGCTGTGCTGAACGTGCTGCCCCCAGAGCCA
AGTGCCACCATGTGCCAGCAGCACCGCCACTTGCCTCTCACTGTCTTATTTTTATATATTTTTC
TAAATACGTGTATATATGCAGTCTACAGAAAACAGAACCTTTATTTTGTGACACAAGGATCAAA
AGATCATATTAAAACAAAGAAACCCCCGTGTTCCCTATGATCACATACCAGCTGATTCTTGCGG
GTACCACAGTCCCATTTTATCTCCACTGATGAATTTTAACCGTGTTAACCACTCAGGCTAAATT
CTACATGATGTATACTTCTTGGTTCCCACCAAAATTGTCGAGCAGCTTAGAACTTGAACTTTAA
TCCCGACTCCATTTTCTTCATAATGAAGTATTTTAGGGTTGTTACCACATCAGCTTGAAGCCTT
CGGATACACTCATGTCCCCATCAGAAAAGTTTTCTGTTAGAATGGCTTCAGAAAAACAAGAAAC
CAAACAGAACCTTTCCATGTTAACTTCCTTATTTCTTTTTCTTTGCTAAACTCATCATTATGTT
GAACTAAGGGGTCCACCTAGCCATGTCCACTGTACCTGATACTCAGCCTGTCAGCTCACAGGGC
TTCAGATTATTTCAGTCAAATCCCAGTATTTTAAAGCTGCATTAGAACATTTTCTGATGGTCCT
GACCAGTAGCACGTCGCTCGTGTTTTCTGTAACACAAGGCCCAAGGGCTTTTTGTAAAGAAAAT
AGAAAGTTACAGCAGCTGCTCTGTGGCGTGTGGATGCAAGTGTTTCTAGTGGTGTTGGAGACAA
TCCTCTTTTTATTCAGGGCTGCTCAAAACGAGACCTCCTGTGTTCCAGACAGGAGCTTACACAC
CAGGGGACAGGGGGACAGTTCGGTTTGTGGTGATGGCCATTTCCAAATGTCAGCAGTATTCCTT
TTCATGTTTGCCGGTTATAAAGCTGTTCATTGTGAACTTTGTAACTCTGCTGTCCACTTCTAAT
TAAATTATCAGATGCTAACCGTGGTTTCCTTTGAATGCTCCCATTCATGAAATCAAGACAATAT
TGGCTTCTTCCTGTATTGGGGTTTTAGTTTAAACATGAATAAATGTCACCCTTTGGAGAGCTCA
GTTTGTTACCAGAGCCTGGTTGGAAATACCAGCAGACTGTTACAGATGCCAAGCAGTTTTTATT
AAGGACAACGTAACAACTGATGATATGTGATAAAGTTAAAAAACTTCTTATTATATATTTTATT
TACAAAAGTATTATGCAAAGTTCGCATTACCTTATGAGAAGAAATAAAGTCAATTGATAGTTGC

hide sequence

RefSeq Acc Id:

XM_039107707 ⟹ XP_038963635

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	181,538,249 - 181,682,076 (+)	NCBI
mRatBN7.2	4	179,807,579 - 179,951,428 (+)	NCBI

RefSeq Acc Id:

XM_039107710 ⟹ XP_038963638

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	181,538,249 - 181,682,076 (+)	NCBI
mRatBN7.2	4	179,807,579 - 179,951,428 (+)	NCBI

RefSeq Acc Id:

XM_039107711 ⟹ XP_038963639

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	181,538,249 - 181,682,076 (+)	NCBI
mRatBN7.2	4	179,807,579 - 179,951,428 (+)	NCBI

RefSeq Acc Id:

XM_039107712 ⟹ XP_038963640

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	181,538,249 - 181,682,076 (+)	NCBI
mRatBN7.2	4	179,807,579 - 179,951,428 (+)	NCBI

RefSeq Acc Id:

XM_039107713 ⟹ XP_038963641

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	181,538,249 - 181,682,076 (+)	NCBI
mRatBN7.2	4	179,807,579 - 179,951,428 (+)	NCBI

RefSeq Acc Id:

XM_039107714 ⟹ XP_038963642

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	181,538,249 - 181,682,076 (+)	NCBI
mRatBN7.2	4	179,807,579 - 179,951,428 (+)	NCBI

RefSeq Acc Id:

XM_039107715 ⟹ XP_038963643

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	181,538,249 - 181,682,076 (+)	NCBI
mRatBN7.2	4	179,807,579 - 179,951,428 (+)	NCBI

RefSeq Acc Id:

XM_039107716 ⟹ XP_038963644

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	181,538,249 - 181,682,076 (+)	NCBI
mRatBN7.2	4	179,807,579 - 179,951,428 (+)	NCBI

RefSeq Acc Id:

XM_039107717 ⟹ XP_038963645

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	181,538,249 - 181,682,076 (+)	NCBI
mRatBN7.2	4	179,807,579 - 179,951,428 (+)	NCBI

RefSeq Acc Id:

XM_039107718 ⟹ XP_038963646

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	181,538,249 - 181,682,076 (+)	NCBI
mRatBN7.2	4	179,807,579 - 179,951,428 (+)	NCBI

RefSeq Acc Id:

XM_039107719 ⟹ XP_038963647

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	181,538,249 - 181,682,076 (+)	NCBI
mRatBN7.2	4	179,807,579 - 179,951,428 (+)	NCBI

RefSeq Acc Id:

XM_063286176 ⟹ XP_063142246

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	181,538,249 - 181,682,076 (+)	NCBI

RefSeq Acc Id:

XM_063286177 ⟹ XP_063142247

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	181,538,249 - 181,682,076 (+)	NCBI

RefSeq Acc Id:

XM_063286178 ⟹ XP_063142248

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	181,538,249 - 181,682,076 (+)	NCBI

RefSeq Acc Id:

XM_063286179 ⟹ XP_063142249

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	181,538,249 - 181,682,076 (+)	NCBI

RefSeq Acc Id:

XM_063286180 ⟹ XP_063142250

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	181,538,249 - 181,682,076 (+)	NCBI

RefSeq Acc Id:

XM_063286181 ⟹ XP_063142251

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	181,538,249 - 181,682,076 (+)	NCBI

RefSeq Acc Id:

XM_063286182 ⟹ XP_063142252

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	181,538,249 - 181,682,076 (+)	NCBI

RefSeq Acc Id:

XM_063286183 ⟹ XP_063142253

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	181,538,249 - 181,682,076 (+)	NCBI

RefSeq Acc Id:

XM_063286184 ⟹ XP_063142254

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	181,538,249 - 181,682,076 (+)	NCBI

RefSeq Acc Id:

XM_063286186 ⟹ XP_063142256

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	181,538,249 - 181,682,076 (+)	NCBI

RefSeq Acc Id:

XM_063286187 ⟹ XP_063142257

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	181,538,249 - 181,682,076 (+)	NCBI

RefSeq Acc Id:

XM_063286188 ⟹ XP_063142258

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	181,538,249 - 181,682,076 (+)	NCBI

RefSeq Acc Id:

XM_063286189 ⟹ XP_063142259

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	181,538,249 - 181,682,076 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001382567	(Get FASTA)	NCBI Sequence Viewer
	XP_008761604	(Get FASTA)	NCBI Sequence Viewer
	XP_038963635	(Get FASTA)	NCBI Sequence Viewer
	XP_038963638	(Get FASTA)	NCBI Sequence Viewer
	XP_038963639	(Get FASTA)	NCBI Sequence Viewer
	XP_038963640	(Get FASTA)	NCBI Sequence Viewer
	XP_038963641	(Get FASTA)	NCBI Sequence Viewer
	XP_038963642	(Get FASTA)	NCBI Sequence Viewer
	XP_038963643	(Get FASTA)	NCBI Sequence Viewer
	XP_038963644	(Get FASTA)	NCBI Sequence Viewer
	XP_038963645	(Get FASTA)	NCBI Sequence Viewer
	XP_038963646	(Get FASTA)	NCBI Sequence Viewer
	XP_038963647	(Get FASTA)	NCBI Sequence Viewer
	XP_063142246	(Get FASTA)	NCBI Sequence Viewer
	XP_063142247	(Get FASTA)	NCBI Sequence Viewer
	XP_063142248	(Get FASTA)	NCBI Sequence Viewer
	XP_063142249	(Get FASTA)	NCBI Sequence Viewer
	XP_063142250	(Get FASTA)	NCBI Sequence Viewer
	XP_063142251	(Get FASTA)	NCBI Sequence Viewer
	XP_063142252	(Get FASTA)	NCBI Sequence Viewer
	XP_063142253	(Get FASTA)	NCBI Sequence Viewer
	XP_063142254	(Get FASTA)	NCBI Sequence Viewer
	XP_063142256	(Get FASTA)	NCBI Sequence Viewer
	XP_063142257	(Get FASTA)	NCBI Sequence Viewer
	XP_063142258	(Get FASTA)	NCBI Sequence Viewer
	XP_063142259	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM01402	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000039655
	ENSRNOP00000039655.4
	ENSRNOP00000074098
	ENSRNOP00000074098.2
	ENSRNOP00000093133
	ENSRNOP00000093133.2
	ENSRNOP00000096890
	ENSRNOP00000096890.2
	ENSRNOP00000097266
	ENSRNOP00000097266.2
	ENSRNOP00000110979
	ENSRNOP00000110979.1

RefSeq Acc Id:	XP_008761604 ⟸ XM_008763382
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K781 (UniProtKB/TrEMBL), A0A8I6ANB2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMSDASDMLAAALEQMDGIIAGSKALEYSNGIFDCQSPTSPFMGSLRALHLVEDLRGLLEMMET DEKEGLRCQIPDSTAEMLIEWLQNQMTNGHLPGNGDVYQERLARLENDKESLVLQVSVLTDQVE AQGEKIRDLEFCLEEHREKLNATEEMLQQELLSRTSLETQKLELMAEISNLKLKLTAVEKDRLD YEDRFRDTEGLIQEINDLRLKVNEMDSERLQYEKKLKSTKSLMAKLSSMKIKVGQMQYEKQRME QKWETLKDELASLKEQLEEKECEVKRLQERLVCKTKGEGVEILDRDENIKRKLKEKNIEVQKMK KAVESLMAANEEKERKIEDLRQCLSRYRKVQDPAALAQGQEGECEGLFHSSSISTLLDAQGFSD LERSTSSTPGMGSPSRDPLHTSAPEEFHTSVLQASVPSLFPTSMDEETCEKPKLATKPETSFEE GDGRAVLGADAEVSLSDGVSTSSLQKSSSLGNLKKETSDGVEKESIQKPPEDKTPTDSHTFGTL PPKAPGHGASVDDSPFGTRKARSSFGRGFFKIKSGKRTASAPNLDRKRSASAPTLAETEKETDE HLDLAGTSRPKGSQGTSPFQMSPPSPDSRKKSRGIMRLFGKLRRSQSTTFNPDDMSEPEFKRGG TRATAGPRLGWSRDLGQSNSDLDTPFAKWTKEQVCSWLAEQGLGSYLSSGKHWIMSGQTLLQAS QQDLEKELGIKHSLHRKKLQLALQALGSEEETNYGKLDFNWVTRWLDDIGLPQYKTQFDEGRVD GRMLHYMTVDDLLSLKVVSVLHHLSIKRAIQVLRINNFEPNCLRRRPSDENSITPSEVQQWTNH RVMEWLRSVDLAEYAPNLRGSGVHGGLMVLEPRFNVETMAQLLNIPPNKTLLRRHLATHFNLLI GAEAQHQKRDAMELPDYVLLTATAKVKPKKLTFSNFGNLRKKKHEDGEEYVCPMELGQASGSSQ KGFRPGLDMRLYEEDDLDRLEQMEDSEGTVRQIGAFSEGINNLTHMLKEDDMFKDFAARSPSAS ITDEDSNV hide sequence

Ensembl Acc Id:

ENSRNOP00000039655 ⟸ ENSRNOT00000044147

Ensembl Acc Id:

ENSRNOP00000074098 ⟸ ENSRNOT00000083633

RefSeq Acc Id:	XP_038963635 ⟸ XM_039107707
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6ANB2 (UniProtKB/TrEMBL), A0A0G2K781 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038963639 ⟸ XM_039107711
- Peptide Label:	isoform X5
- UniProtKB:	A0A0G2K781 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038963638 ⟸ XM_039107710
- Peptide Label:	isoform X3
- UniProtKB:	A0A0G2K781 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038963641 ⟸ XM_039107713
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I6ATF2 (UniProtKB/TrEMBL), A0A0G2K781 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038963640 ⟸ XM_039107712
- Peptide Label:	isoform X4
- UniProtKB:	A0A0G2K781 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038963647 ⟸ XM_039107719
- Peptide Label:	isoform X17
- UniProtKB:	A0A0G2K781 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038963642 ⟸ XM_039107714
- Peptide Label:	isoform X8
- UniProtKB:	A0A0G2K781 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038963644 ⟸ XM_039107716
- Peptide Label:	isoform X13
- UniProtKB:	A0A8I6AGP2 (UniProtKB/TrEMBL), A0A0G2K781 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038963643 ⟸ XM_039107715
- Peptide Label:	isoform X12
- UniProtKB:	A0A0G2K781 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038963645 ⟸ XM_039107717
- Peptide Label:	isoform X15
- UniProtKB:	A0A0G2K781 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038963646 ⟸ XM_039107718
- Peptide Label:	isoform X16
- UniProtKB:	A6IN37 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000097266 ⟸ ENSRNOT00000115987

Ensembl Acc Id:

ENSRNOP00000093133 ⟸ ENSRNOT00000094198

Ensembl Acc Id:

ENSRNOP00000096890 ⟸ ENSRNOT00000098646

RefSeq Acc Id:	NP_001382567 ⟸ NM_001395638
- UniProtKB:	A0A0G2K781 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063142247 ⟸ XM_063286177
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I6ATF2 (UniProtKB/TrEMBL), A0A0G2K781 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063142251 ⟸ XM_063286181
- Peptide Label:	isoform X9
- UniProtKB:	A0A0G2K781 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063142249 ⟸ XM_063286179
- Peptide Label:	isoform X8
- UniProtKB:	A0A0G2K781 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063142253 ⟸ XM_063286183
- Peptide Label:	isoform X10
- UniProtKB:	A0A0G2K781 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063142256 ⟸ XM_063286186
- Peptide Label:	isoform X13
- UniProtKB:	A0A8I6AGP2 (UniProtKB/TrEMBL), A0A0G2K781 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063142258 ⟸ XM_063286188
- Peptide Label:	isoform X14
- UniProtKB:	A0A0G2K781 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063142259 ⟸ XM_063286189
- Peptide Label:	isoform X16
- UniProtKB:	A6IN37 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063142248 ⟸ XM_063286178
- Peptide Label:	isoform X7
- UniProtKB:	A0A0G2K781 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063142250 ⟸ XM_063286180
- Peptide Label:	isoform X9
- UniProtKB:	A0A0G2K781 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063142254 ⟸ XM_063286184
- Peptide Label:	isoform X11
- UniProtKB:	A0A0G2K781 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063142252 ⟸ XM_063286182
- Peptide Label:	isoform X10
- UniProtKB:	A0A0G2K781 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063142257 ⟸ XM_063286187
- Peptide Label:	isoform X14
- UniProtKB:	A0A0G2K781 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063142246 ⟸ XM_063286176
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2K781 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000110979 ⟸ ENSRNOT00000170543

Protein Domains

SAM

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2K781-F1-model_v2	AlphaFold	A0A0G2K781	1-1032	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693518

Promoter ID:

EPDNEW_R4031

Type:

initiation region

Name:

Ppfibp1_1

Description:

PPFIA binding protein 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	181,286,411 - 181,286,471	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310010	AgrOrtholog
BioCyc Gene	G2FUF-42422	BioCyc
Ensembl Genes	ENSRNOG00000031709	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000044147	ENTREZGENE
	ENSRNOT00000044147.5	UniProtKB/TrEMBL
	ENSRNOT00000083633	ENTREZGENE
	ENSRNOT00000083633.3	UniProtKB/TrEMBL
	ENSRNOT00000094198	ENTREZGENE
	ENSRNOT00000094198.2	UniProtKB/TrEMBL
	ENSRNOT00000098646	ENTREZGENE
	ENSRNOT00000098646.2	UniProtKB/TrEMBL
	ENSRNOT00000115987	ENTREZGENE
	ENSRNOT00000115987.2	UniProtKB/TrEMBL
	ENSRNOT00000170543	ENTREZGENE
	ENSRNOT00000170543.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.150.50	UniProtKB/TrEMBL
	1.10.287.1490	UniProtKB/TrEMBL
InterPro	Liprin	UniProtKB/TrEMBL
	Liprin-beta_SAM_rpt_1	UniProtKB/TrEMBL
	Liprin-beta_SAM_rpt_2	UniProtKB/TrEMBL
	Liprin-beta_SAM_rpt_3	UniProtKB/TrEMBL
	SAM	UniProtKB/TrEMBL
	SAM/pointed	UniProtKB/TrEMBL
NCBI Gene	312855	ENTREZGENE
PANTHER	PTHR12587	UniProtKB/TrEMBL
	PTHR12587:SF16	UniProtKB/TrEMBL
Pfam	SAM_1	UniProtKB/TrEMBL
	SAM_2	UniProtKB/TrEMBL
PhenoGen	Ppfibp1	PhenoGen
PROSITE	SAM_DOMAIN	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000031709	RatGTEx
SMART	SAM	UniProtKB/TrEMBL
Superfamily-SCOP	MPN010-like	UniProtKB/TrEMBL
	SAM_homology	UniProtKB/TrEMBL
UniProt	A0A0G2K781	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AGP2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6ANB2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6ATF2	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LYW2_RAT	UniProtKB/TrEMBL
	A6IN37	ENTREZGENE, UniProtKB/TrEMBL
	D3ZJW3_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-17	Ppfibp1	PPFIA binding protein 1	Ppfibp1	PTPRF interacting protein, binding protein 1 (liprin beta 1)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Ppfibp1	PTPRF interacting protein, binding protein 1 (liprin beta 1)	Ppfibp1_predicted	PTPRF interacting protein, binding protein 1 (liprin beta 1) (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Ppfibp1_predicted	PTPRF interacting protein, binding protein 1 (liprin beta 1) (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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