Ift122 (intraflagellar transport 122) - Rat Genome Database

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Gene: Ift122 (intraflagellar transport 122) Rattus norvegicus
Analyze
Symbol: Ift122
Name: intraflagellar transport 122
RGD ID: 1311302
Description: Predicted to be involved in several processes, including cilium organization; embryonic morphogenesis; and protein localization to organelle. Predicted to act upstream of or within several processes, including embryonic morphogenesis; negative regulation of keratinocyte proliferation; and smoothened signaling pathway involved in dorsal/ventral neural tube patterning. Predicted to be located in several cellular components, including ciliary basal body; ciliary base; and photoreceptor connecting cilium. Predicted to be part of intraciliary transport particle A. Predicted to be active in non-motile cilium. Human ortholog(s) of this gene implicated in cranioectodermal dysplasia 1. Orthologous to human IFT122 (intraflagellar transport 122); INTERACTS WITH 6-propyl-2-thiouracil; acetamide; acrylamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: intraflagellar transport 122 homolog; intraflagellar transport 122 homolog (Chlamydomonas); intraflagellar transport protein 122 homolog; LOC312651; MGC105616; WD repeat domain 10; Wdr10
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84150,577,525 - 150,648,052 (+)NCBIGRCr8
mRatBN7.24148,905,031 - 148,975,458 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4148,905,046 - 148,975,458 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4155,133,747 - 155,203,956 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04150,917,764 - 150,987,979 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04149,540,667 - 149,610,878 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04147,756,574 - 147,826,983 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4147,756,553 - 147,826,997 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04211,040,256 - 211,110,694 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44151,982,026 - 152,052,635 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14152,226,874 - 152,282,409 (+)NCBI
Celera4137,795,055 - 137,865,121 (+)NCBICelera
Cytogenetic Map4q42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:8889548   PMID:15755804   PMID:19000668   PMID:19208653   PMID:19946888   PMID:20889716   PMID:21209331   PMID:21552265   PMID:21703454   PMID:22689656   PMID:27932497   PMID:28778798  
PMID:29220510   PMID:30476139  


Genomics

Comparative Map Data
Ift122
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84150,577,525 - 150,648,052 (+)NCBIGRCr8
mRatBN7.24148,905,031 - 148,975,458 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4148,905,046 - 148,975,458 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4155,133,747 - 155,203,956 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04150,917,764 - 150,987,979 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04149,540,667 - 149,610,878 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04147,756,574 - 147,826,983 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4147,756,553 - 147,826,997 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04211,040,256 - 211,110,694 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44151,982,026 - 152,052,635 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14152,226,874 - 152,282,409 (+)NCBI
Celera4137,795,055 - 137,865,121 (+)NCBICelera
Cytogenetic Map4q42NCBI
IFT122
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383129,440,224 - 129,520,507 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3129,429,607 - 129,520,510 (+)EnsemblGRCh38hg38GRCh38
GRCh373129,159,067 - 129,239,350 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363130,641,658 - 130,721,881 (+)NCBINCBI36Build 36hg18NCBI36
Build 343130,641,665 - 130,721,888NCBI
Celera3127,585,804 - 127,666,027 (+)NCBICelera
Cytogenetic Map3q21.3-q22.1NCBI
HuRef3126,542,357 - 126,622,651 (+)NCBIHuRef
CHM1_13129,122,014 - 129,202,479 (+)NCBICHM1_1
T2T-CHM13v2.03132,185,050 - 132,264,949 (+)NCBIT2T-CHM13v2.0
Ift122
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396115,830,340 - 115,903,660 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6115,830,431 - 115,903,660 (+)EnsemblGRCm39 Ensembl
GRCm386115,853,379 - 115,926,699 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6115,853,470 - 115,926,699 (+)EnsemblGRCm38mm10GRCm38
MGSCv376115,803,546 - 115,876,717 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366115,819,147 - 115,892,309 (+)NCBIMGSCv36mm8
Celera6117,690,896 - 117,762,021 (+)NCBICelera
Cytogenetic Map6E3NCBI
cM Map653.72NCBI
Ift122
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542917,794,879 - 17,858,609 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542917,795,757 - 17,858,609 (-)NCBIChiLan1.0ChiLan1.0
IFT122
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22127,372,537 - 127,453,058 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13127,377,261 - 127,458,140 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03126,498,018 - 126,578,211 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13133,851,433 - 133,930,117 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3133,851,433 - 133,930,117 (+)Ensemblpanpan1.1panPan2
IFT122
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1205,644,002 - 5,716,702 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl205,644,089 - 5,715,906 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha205,681,501 - 5,754,117 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0205,673,817 - 5,745,833 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl205,673,823 - 5,745,742 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1205,389,645 - 5,462,288 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0205,742,685 - 5,815,217 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0205,718,303 - 5,790,303 (-)NCBIUU_Cfam_GSD_1.0
Ift122
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494217,953,004 - 18,001,629 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936602905,486 - 956,521 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936602908,034 - 956,634 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IFT122
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1368,828,719 - 68,902,060 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11368,828,710 - 68,902,062 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21376,112,286 - 76,129,329 (+)NCBISscrofa10.2Sscrofa10.2susScr3
IFT122
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12251,528,383 - 51,616,757 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2251,528,254 - 51,616,682 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041114,848,375 - 114,949,041 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ift122
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624872462,916 - 520,323 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624872462,778 - 520,217 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ift122
403 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:23
Count of miRNA genes:23
Interacting mature miRNAs:23
Transcripts:ENSRNOT00000014733
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1582237Kidm34Kidney mass QTL 3440.0001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)4148090542168069246Rat
61446Coreg2Compensatory renal growth QTL 23.5kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)4148423102157580971Rat
1300116Hrtrt5Heart rate QTL 53.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)4116179486151161268Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4144639524182687754Rat
631683Bp116Blood pressure QTL 1160.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4124303370169303370Rat
61451Ciaa4CIA Autoantibody QTL 43.1blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)4126395976167139601Rat
1331738Bp209Blood pressure QTL 2092.979arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)4138503169179293946Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
1549827Scl46Serum cholesterol level QTL 463.5blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)4132396220177396220Rat
731165Uae21Urinary albumin excretion QTL 212.40.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)4106649412151649412Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4109866907167139601Rat
7411558Bw133Body weight QTL 13313.840.001body mass (VT:0001259)body weight gain (CMO:0000420)4125590636170590636Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4145568712182687754Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
1549832Bss3Bone structure and strength QTL 311femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)4109827074154827074Rat
70177Xhs1X-ray hypersensitivity QTL 125.1intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)482798864152731274Rat
2303623Vencon2Ventilatory control QTL 23.8respiration trait (VT:0001943)minute ventilation (CMO:0000132)4135204660180204660Rat
1578674Bmd12Bone mineral density QTL 123.8femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)4135699135180699135Rat
737978Pia23Pristane induced arthritis QTL 235.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4131730738167139601Rat
61362Oia2Oil induced arthritis QTL 20.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4138503169173369699Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)456647873149491524Rat
2293659Bmd35Bone mineral density QTL 354.50.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)4137755016181392681Rat
1331759Hrtrt13Heart rate QTL 133.54628heart pumping trait (VT:2000009)heart rate (CMO:0000002)4110275411168266883Rat
724535Cm18Cardiac mass QTL 182.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)4118856416163856416Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4144639524182687754Rat
2302049Pia32Pristane induced arthritis QTL 325.10.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)4105789505150789505Rat
724558Plsm2Polydactyly-luxate syndrome (PLS) morphotypes QTL 20.0003hindlimb integrity trait (VT:0010563)hind foot phalanges count (CMO:0001949)4132422778177422778Rat
6478763Anxrr46Anxiety related response QTL 460.07428locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
6478760Anxrr45Anxiety related response QTL 450.06717locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
1331802Srn5Serum renin concentration QTL 53.045renin activity (VT:0005581)plasma renin activity level (CMO:0000116)4119428175157578333Rat
1298524Oia8Oil induced arthritis QTL 8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4138503169173369699Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)459948935154902892Rat
7207480Bss105Bone structure and strength QTL 1058.1femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)4109827074154827074Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)493308457167139447Rat
6478778Anxrr51Anxiety related response QTL 510.25384locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4124778595169778595Rat
61406Scwia1Streptococcal cell wall induced arthritis QTL 12.3joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)4106805662151805662Rat
631511Pia7Pristane induced arthritis QTL 74.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4131730738167139601Rat
634347Hcar8Hepatocarcinoma resistance QTL 85.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)4123143783168143783Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)483428419177635233Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)444463720155883716Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)485379421167139601Rat
61422Cia13Collagen induced arthritis QTL 134.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4132642577167139601Rat
634342Cia24Collagen induced arthritis QTL 244.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4146565735175236377Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)464528739157573521Rat
12798519Anxrr54Anxiety related response QTL 542.540.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4114627026159627026Rat
12798523Anxrr56Anxiety related response QTL 562.830.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)485253748150276390Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
12798525Anxrr57Anxiety related response QTL 573.210.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4147278504167139601Rat

Markers in Region
BF399434  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24148,960,134 - 148,960,351 (+)MAPPERmRatBN7.2
Rnor_6.04147,811,899 - 147,812,115NCBIRnor6.0
Rnor_5.04211,095,610 - 211,095,826UniSTSRnor5.0
RGSC_v3.44152,037,312 - 152,037,528UniSTSRGSC3.4
Celera4137,850,097 - 137,850,313UniSTS
RH 3.4 Map4950.8UniSTS
Cytogenetic Map4q42UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 6 11 4 4 74 35 41 11
Low 3 37 46 37 19 37 8 11 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001009416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001309521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006237067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005503231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010065648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC087667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA512199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD372159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CO399796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CV121577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM031265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ132809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000014733   ⟹   ENSRNOP00000014733
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4148,914,381 - 148,960,415 (+)Ensembl
Rnor_6.0 Ensembl4147,756,695 - 147,812,155 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000086549   ⟹   ENSRNOP00000071095
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4148,905,046 - 148,975,458 (+)Ensembl
Rnor_6.0 Ensembl4147,756,553 - 147,826,997 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000112295   ⟹   ENSRNOP00000086252
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4148,905,046 - 148,975,458 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000114234   ⟹   ENSRNOP00000079303
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4148,905,126 - 148,975,452 (+)Ensembl
RefSeq Acc Id: NM_001009416   ⟹   NP_001009416
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84150,577,642 - 150,633,009 (+)NCBI
mRatBN7.24148,905,046 - 148,960,415 (+)NCBI
Rnor_6.04147,756,667 - 147,812,179 (+)NCBI
Celera4137,795,055 - 137,850,377 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001309521   ⟹   NP_001296450
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84150,577,642 - 150,648,052 (+)NCBI
mRatBN7.24148,905,046 - 148,975,458 (+)NCBI
Rnor_6.04147,756,667 - 147,826,983 (+)NCBI
Celera4137,795,055 - 137,865,121 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006237067   ⟹   XP_006237129
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84150,577,525 - 150,648,048 (+)NCBI
mRatBN7.24148,905,031 - 148,975,179 (+)NCBI
Rnor_6.04147,756,574 - 147,826,983 (+)NCBI
Rnor_5.04211,040,256 - 211,110,694 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039107640   ⟹   XP_038963568
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84150,577,525 - 150,648,048 (+)NCBI
mRatBN7.24148,905,031 - 148,975,458 (+)NCBI
RefSeq Acc Id: XM_039107642   ⟹   XP_038963570
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84150,577,525 - 150,648,048 (+)NCBI
mRatBN7.24148,905,031 - 148,975,458 (+)NCBI
RefSeq Acc Id: XM_039107643   ⟹   XP_038963571
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84150,577,525 - 150,638,353 (+)NCBI
mRatBN7.24148,905,031 - 148,965,772 (+)NCBI
RefSeq Acc Id: XM_063286092   ⟹   XP_063142162
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84150,577,525 - 150,648,048 (+)NCBI
RefSeq Acc Id: XM_063286093   ⟹   XP_063142163
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84150,577,525 - 150,648,048 (+)NCBI
RefSeq Acc Id: XM_063286094   ⟹   XP_063142164
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84150,577,525 - 150,648,048 (+)NCBI
RefSeq Acc Id: XM_063286095   ⟹   XP_063142165
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84150,577,525 - 150,648,048 (+)NCBI
RefSeq Acc Id: XR_005503231
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84150,577,525 - 150,628,441 (+)NCBI
mRatBN7.24148,905,031 - 148,955,849 (+)NCBI
RefSeq Acc Id: XR_010065648
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84150,577,525 - 150,628,441 (+)NCBI
RefSeq Acc Id: XP_006237129   ⟸   XM_006237067
- Peptide Label: isoform X4
- UniProtKB: A0A0G2JZL6 (UniProtKB/TrEMBL),   A6IL02 (UniProtKB/TrEMBL),   A0A8I5ZMU0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001296450   ⟸   NM_001309521
- Peptide Label: isoform 1
- UniProtKB: A0A8I5ZMU0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001009416   ⟸   NM_001009416
- Peptide Label: isoform 2
- UniProtKB: Q5PPJ1 (UniProtKB/TrEMBL),   F1M7W3 (UniProtKB/TrEMBL),   A0A8J8XQ65 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000014733   ⟸   ENSRNOT00000014733
Ensembl Acc Id: ENSRNOP00000071095   ⟸   ENSRNOT00000086549
RefSeq Acc Id: XP_038963568   ⟸   XM_039107640
- Peptide Label: isoform X3
- UniProtKB: A0A8I5ZMU0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963570   ⟸   XM_039107642
- Peptide Label: isoform X7
- UniProtKB: A0A8I6A5N4 (UniProtKB/TrEMBL),   A0A8I5ZMU0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963571   ⟸   XM_039107643
- Peptide Label: isoform X8
- UniProtKB: A0A8J8XQ65 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000086252   ⟸   ENSRNOT00000112295
Ensembl Acc Id: ENSRNOP00000079303   ⟸   ENSRNOT00000114234
RefSeq Acc Id: XP_063142162   ⟸   XM_063286092
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZMU0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142163   ⟸   XM_063286093
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZMU0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142164   ⟸   XM_063286094
- Peptide Label: isoform X5
- UniProtKB: A0A8I5ZMU0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142165   ⟸   XM_063286095
- Peptide Label: isoform X6
- UniProtKB: A0A8I5ZMU0 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JZL6-F1-model_v2 AlphaFold A0A0G2JZL6 1-1241 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693331
Promoter ID:EPDNEW_R3853
Type:initiation region
Name:Ift122_1
Description:intraflagellar transport 122
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04147,756,643 - 147,756,703EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311302 AgrOrtholog
BioCyc Gene G2FUF-43308 BioCyc
Ensembl Genes ENSRNOG00000010952 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000014733.7 UniProtKB/TrEMBL
  ENSRNOT00000086549.2 UniProtKB/TrEMBL
  ENSRNOT00000112295.1 UniProtKB/TrEMBL
  ENSRNOT00000114234.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.470 UniProtKB/TrEMBL
  2.130.10.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7317105 IMAGE-MGC_LOAD
InterPro Ift122 UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
KEGG Report rno:312651 UniProtKB/TrEMBL
MGC_CLONE MGC:105616 IMAGE-MGC_LOAD
NCBI Gene 312651 ENTREZGENE
PANTHER INTRAFLAGELLAR TRANSPORT PROTEIN 122 HOMOLOG UniProtKB/TrEMBL
  PTHR12764 UniProtKB/TrEMBL
Pfam WD40 UniProtKB/TrEMBL
PhenoGen Ift122 PhenoGen
PROSITE WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
RatGTEx ENSRNOG00000010952 RatGTEx
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP WD40_like UniProtKB/TrEMBL
UniProt A0A0G2JZL6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZMU0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A5N4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8J8XQ65 ENTREZGENE, UniProtKB/TrEMBL
  A6IL02 ENTREZGENE, UniProtKB/TrEMBL
  F1M7W3 ENTREZGENE
  Q5PPJ1 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary F1M7W3 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-07-09 Ift122  intraflagellar transport 122  Ift122  intraflagellar transport 122 homolog (Chlamydomonas)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-04 Ift122  intraflagellar transport 122 homolog (Chlamydomonas)  Wdr10  WD repeat domain 10  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Wdr10  WD repeat domain 10  Wdr10_predicted  WD repeat domain 10 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Wdr10_predicted  WD repeat domain 10 (predicted)      Symbol and Name status set to approved 70820 APPROVED