Erc1 (ELKS/RAB6-interacting/CAST family member 1) - Rat Genome Database

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Gene: Erc1 (ELKS/RAB6-interacting/CAST family member 1) Rattus norvegicus
Analyze
Symbol: Erc1
Name: ELKS/RAB6-interacting/CAST family member 1
RGD ID: 628733
Description: Enables PDZ domain binding activity. Predicted to be involved in several processes, including I-kappaB phosphorylation; maintenance of presynaptic active zone structure; and positive regulation of NF-kappaB transcription factor activity. Located in membrane; postsynaptic density; and synaptic vesicle. Is active in presynaptic active zone cytoplasmic component. Orthologous to human ERC1 (ELKS/RAB6-interacting/CAST family member 1); PARTICIPATES IN interleukin-1 signaling pathway; nuclear factor kappa B signaling pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: CAST; Cast2; CAZ-associated structural protein 2; Elks; ERC; ERC protein 1; ERC-1; ERC1b; Rab6 interacting protein 2; Rab6-interacting protein 2; Rab6ip2; RIM-Binding Protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84154,435,936 - 154,727,987 (-)NCBIGRCr8
GRCr8 Ensembl4154,435,944 - 154,727,987 (-)EnsemblGRCr8 Ensembl
mRatBN7.24152,763,664 - 153,055,724 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4152,767,419 - 153,055,639 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4159,025,966 - 159,332,211 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04154,809,683 - 155,115,934 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04153,433,030 - 153,739,286 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04152,087,393 - 152,380,023 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4152,087,379 - 152,380,184 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04219,174,705 - 219,465,108 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44155,931,377 - 156,221,104 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4141,623,820 - 141,910,539 (-)NCBICelera
RGSC_v3.14156,234,169 - 156,465,945 (-)NCBI
Cytogenetic Map4q42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
17beta-estradiol  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,5-hexanedione  (EXP)
3,3',4,4'-tetrachlorobiphenyl  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
acetamide  (EXP)
acrolein  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
alpha-pinene  (ISO)
ammonium chloride  (EXP)
amphetamine  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
cisplatin  (ISO)
clofibrate  (EXP)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
dicrotophos  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
folic acid  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
genistein  (ISO)
geraniol  (ISO)
glycidol  (EXP)
hydroquinone O-beta-D-glucopyranoside  (ISO)
irinotecan  (ISO)
ivermectin  (ISO)
ketoconazole  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methapyrilene  (ISO)
methoxychlor  (EXP)
N,N-diethyl-m-toluamide  (EXP)
N-nitrosodiethylamine  (EXP)
nickel atom  (ISO)
okadaic acid  (ISO)
ozone  (ISO)
paracetamol  (EXP)
perfluorooctane-1-sulfonic acid  (ISO)
permethrin  (EXP)
pinostrobin  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
testosterone enanthate  (ISO)
thimerosal  (ISO)
thiram  (ISO)
titanium dioxide  (ISO)
torcetrapib  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
valproic acid  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. RIM proteins tether Ca2+ channels to presynaptic active zones via a direct PDZ-domain interaction. Kaeser PS, etal., Cell. 2011 Jan 21;144(2):282-95. doi: 10.1016/j.cell.2010.12.029.
3. Solution structure of the RIM1alpha PDZ domain in complex with an ELKS1b C-terminal peptide. Lu J, etal., J Mol Biol. 2005 Sep 16;352(2):455-66.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. SAD-B Phosphorylation of CAST Controls Active Zone Vesicle Recycling for Synaptic Depression. Mochida S, etal., Cell Rep. 2016 Sep 13;16(11):2901-2913. doi: 10.1016/j.celrep.2016.08.020.
6. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
7. GOA pipeline RGD automated data pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. A family of RIM-binding proteins regulated by alternative splicing: Implications for the genesis of synaptic active zones. Wang Y, etal., Proc Natl Acad Sci U S A 2002 Oct 29;99(22):14464-9.
Additional References at PubMed
PMID:11929610   PMID:14723704   PMID:15218148   PMID:16716196   PMID:19515363   PMID:21700703   PMID:21712437   PMID:23791195   PMID:25209271   PMID:25468996   PMID:27224062   PMID:27253063  
PMID:27537483   PMID:28131823   PMID:28264913  


Genomics

Comparative Map Data
Erc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84154,435,936 - 154,727,987 (-)NCBIGRCr8
GRCr8 Ensembl4154,435,944 - 154,727,987 (-)EnsemblGRCr8 Ensembl
mRatBN7.24152,763,664 - 153,055,724 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4152,767,419 - 153,055,639 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4159,025,966 - 159,332,211 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04154,809,683 - 155,115,934 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04153,433,030 - 153,739,286 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04152,087,393 - 152,380,023 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4152,087,379 - 152,380,184 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04219,174,705 - 219,465,108 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44155,931,377 - 156,221,104 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4141,623,820 - 141,910,539 (-)NCBICelera
RGSC_v3.14156,234,169 - 156,465,945 (-)NCBI
Cytogenetic Map4q42NCBI
ERC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812989,959 - 1,495,933 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12990,509 - 1,495,933 (+)EnsemblGRCh38hg38GRCh38
GRCh37121,100,389 - 1,605,099 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612970,665 - 1,472,958 (+)NCBINCBI36Build 36hg18NCBI36
Celera122,707,077 - 3,211,656 (+)NCBICelera
Cytogenetic Map12p13.33NCBI
HuRef12952,225 - 1,457,980 (+)NCBIHuRef
CHM1_1121,099,408 - 1,604,090 (+)NCBICHM1_1
T2T-CHM13v2.012985,850 - 1,490,194 (+)NCBIT2T-CHM13v2.0
Erc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396119,547,757 - 119,830,985 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6119,547,757 - 119,825,128 (-)EnsemblGRCm39 Ensembl
GRCm386119,570,796 - 119,848,184 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6119,570,796 - 119,848,167 (-)EnsemblGRCm38mm10GRCm38
MGSCv376119,520,814 - 119,798,168 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366119,540,864 - 119,813,753 (-)NCBIMGSCv36mm8
Celera6121,405,104 - 121,685,429 (-)NCBICelera
Cytogenetic Map6F1NCBI
cM Map656.86NCBI
Erc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554543,586,667 - 4,031,130 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554543,584,910 - 4,036,276 (+)NCBIChiLan1.0ChiLan1.0
ERC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2106,489,987 - 7,025,406 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1126,486,819 - 7,022,165 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0121,066,034 - 1,597,562 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1121,027,967 - 1,550,182 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl121,027,967 - 1,545,431 (+)Ensemblpanpan1.1panPan2
ERC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12743,004,243 - 43,544,260 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2743,038,544 - 43,678,843 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha273,140,420 - 3,679,170 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02743,365,560 - 43,911,683 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2743,365,538 - 43,911,649 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12743,303,937 - 43,842,830 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02743,275,814 - 43,815,242 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0272,498,548 - 3,038,339 (-)NCBIUU_Cfam_GSD_1.0
Erc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945107,470,207 - 107,982,754 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366061,201,657 - 1,708,551 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366061,201,420 - 1,713,894 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ERC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl568,223,729 - 68,608,703 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1568,223,722 - 68,608,705 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2570,490,274 - 70,873,482 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ERC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111989,376 - 1,530,470 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl111,030,294 - 1,524,817 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660636,812,077 - 7,356,786 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Erc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473511,400,159 - 11,841,920 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473511,398,603 - 11,907,553 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Erc1
1455 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:77
Count of miRNA genes:58
Interacting mature miRNAs:67
Transcripts:ENSRNOT00000012397
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4146370897184426481Rat
724558Plsm2Polydactyly-luxate syndrome (PLS) morphotypes QTL 20.0003hindlimb integrity trait (VT:0010563)hind foot phalanges count (CMO:0001949)4134095016179095016Rat
1582237Kidm34Kidney mass QTL 3440.0001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)4149763204169799698Rat
61446Coreg2Compensatory renal growth QTL 23.5kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)4150095743159267220Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4146370897184426481Rat
1358364Sradr4Stress Responsive Adrenal Weight QTL 44.92adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)4131384565176384565Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)427730518170099664Rat
6478763Anxrr46Anxiety related response QTL 460.07428locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4112427331157427331Rat
6478760Anxrr45Anxiety related response QTL 450.06717locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4112427331157427331Rat
61451Ciaa4CIA Autoantibody QTL 43.1blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)4123870974168870974Rat
1331802Srn5Serum renin concentration QTL 53.045renin activity (VT:0005581)plasma renin activity level (CMO:0000116)4117559384162559384Rat
1331738Bp209Blood pressure QTL 2092.979arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)4140059299181024663Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
1298524Oia8Oil induced arthritis QTL 8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4140059299184426481Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)460916264184426481Rat
7207480Bss105Bone structure and strength QTL 1058.1femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)4111383604156383604Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)494638356168870820Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4106848959168870974Rat
7411558Bw133Body weight QTL 13313.840.001body mass (VT:0001259)body weight gain (CMO:0000420)4127263297172263297Rat
6478778Anxrr51Anxiety related response QTL 510.25384locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4126334185171334185Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4147299608184426481Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
631511Pia7Pristane induced arthritis QTL 74.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4123870974168870974Rat
1549832Bss3Bone structure and strength QTL 311femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)4111383604156383604Rat
634347Hcar8Hepatocarcinoma resistance QTL 85.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)4124700988169700988Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264174095838Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)4100752691179366077Rat
1581566Eae21Experimental allergic encephalomyelitis QTL 216.2body mass (VT:0001259)maximum body weight loss to initial body weight ratio (CMO:0001400)4137447185182447185Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)445429709157555683Rat
1578674Bmd12Bone mineral density QTL 123.8femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)4137430611182430611Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264184426481Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)486709649168870974Rat
61422Cia13Collagen induced arthritis QTL 134.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4134199006168870974Rat
634342Cia24Collagen induced arthritis QTL 244.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4148121375176967367Rat
737978Pia23Pristane induced arthritis QTL 235.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4123870974168870974Rat
61362Oia2Oil induced arthritis QTL 20.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4140059299184426481Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)465495851159259805Rat
12798519Anxrr54Anxiety related response QTL 542.540.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4116184844161184844Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)412212457182430611Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
12798525Anxrr57Anxiety related response QTL 573.210.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4148834094168870974Rat

Markers in Region
D4Rat107  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr84154,597,593 - 154,597,827 (+)Marker Load Pipeline
mRatBN7.24152,925,326 - 152,925,562 (+)MAPPERmRatBN7.2
Rnor_6.04152,249,616 - 152,249,849NCBIRnor6.0
Rnor_5.04219,336,960 - 219,337,193UniSTSRnor5.0
RGSC_v3.44156,090,004 - 156,090,237UniSTSRGSC3.4
RGSC_v3.44156,090,003 - 156,090,237RGDRGSC3.4
Celera4141,780,453 - 141,780,686UniSTS
RGSC_v3.14156,334,845 - 156,335,078RGD
RH 3.4 Map4978.8RGD
RH 3.4 Map4978.8UniSTS
RH 2.0 Map4972.5RGD
SHRSP x BN Map477.0299RGD
Cytogenetic Map4q42UniSTS
BE108954  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr84154,677,093 - 154,677,273 (+)Marker Load Pipeline
mRatBN7.24153,004,831 - 153,005,011 (+)MAPPERmRatBN7.2
Rnor_6.04152,329,598 - 152,329,777NCBIRnor6.0
Rnor_5.04219,416,860 - 219,417,039UniSTSRnor5.0
RGSC_v3.44156,170,532 - 156,170,711UniSTSRGSC3.4
Celera4141,859,984 - 141,860,163UniSTS
RH 3.4 Map4978.9UniSTS
Cytogenetic Map4q42UniSTS
BE095665  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24152,868,812 - 152,868,967 (+)MAPPERmRatBN7.2
Rnor_6.04152,193,101 - 152,193,255NCBIRnor6.0
Rnor_5.04219,280,713 - 219,280,867UniSTSRnor5.0
RGSC_v3.44156,032,819 - 156,032,973UniSTSRGSC3.4
Celera4141,724,043 - 141,724,197UniSTS
RH 3.4 Map4978.7UniSTS
Cytogenetic Map4q42UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
9 11 49 113 91 90 59 25 59 6 218 97 11 93 45 60 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001394882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001394883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001394884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_172210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006237228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006237229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006237230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006237231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC106348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF541926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY174115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000012397   ⟹   ENSRNOP00000012397
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4154,440,723 - 154,727,796 (-)Ensembl
mRatBN7.2 Ensembl4152,768,451 - 153,055,533 (-)Ensembl
Rnor_6.0 Ensembl4152,092,180 - 152,380,023 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000091473   ⟹   ENSRNOP00000070778
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4154,435,944 - 154,727,987 (-)Ensembl
mRatBN7.2 Ensembl4152,767,419 - 153,055,533 (-)Ensembl
Rnor_6.0 Ensembl4152,087,379 - 152,380,184 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000102886   ⟹   ENSRNOP00000092904
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4154,435,944 - 154,727,987 (-)Ensembl
mRatBN7.2 Ensembl4152,814,772 - 153,055,639 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000109038   ⟹   ENSRNOP00000094050
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4154,435,944 - 154,727,987 (-)Ensembl
mRatBN7.2 Ensembl4152,767,419 - 153,055,533 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000115061   ⟹   ENSRNOP00000084657
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4154,435,944 - 154,727,987 (-)Ensembl
mRatBN7.2 Ensembl4152,767,419 - 153,055,533 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000135155   ⟹   ENSRNOP00000100714
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4154,435,944 - 154,727,987 (-)Ensembl
RefSeq Acc Id: NM_001394882   ⟹   NP_001381811
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84154,435,936 - 154,727,987 (-)NCBI
mRatBN7.24152,763,664 - 153,055,724 (-)NCBI
RefSeq Acc Id: NM_001394883   ⟹   NP_001381812
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84154,435,936 - 154,727,987 (-)NCBI
mRatBN7.24152,763,664 - 153,055,724 (-)NCBI
RefSeq Acc Id: NM_001394884   ⟹   NP_001381813
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84154,435,936 - 154,727,987 (-)NCBI
mRatBN7.24152,763,664 - 153,055,724 (-)NCBI
RefSeq Acc Id: NR_172210
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84154,435,936 - 154,727,987 (-)NCBI
mRatBN7.24152,763,664 - 153,055,724 (-)NCBI
RefSeq Acc Id: XM_006237230   ⟹   XP_006237292
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84154,435,936 - 154,727,851 (-)NCBI
mRatBN7.24152,763,664 - 153,055,704 (-)NCBI
Rnor_6.04152,087,393 - 152,380,021 (-)NCBI
Rnor_5.04219,174,705 - 219,465,108 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039107148   ⟹   XP_038963076
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84154,435,936 - 154,727,851 (-)NCBI
mRatBN7.24152,763,664 - 153,055,704 (-)NCBI
RefSeq Acc Id: XM_063285644   ⟹   XP_063141714
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84154,435,936 - 154,727,851 (-)NCBI
RefSeq Acc Id: XM_063285645   ⟹   XP_063141715
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84154,460,510 - 154,727,851 (-)NCBI
RefSeq Acc Id: XM_063285646   ⟹   XP_063141716
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84154,460,510 - 154,727,851 (-)NCBI
RefSeq Acc Id: XM_063285647   ⟹   XP_063141717
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84154,460,510 - 154,727,851 (-)NCBI
RefSeq Acc Id: XM_063285648   ⟹   XP_063141718
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84154,460,510 - 154,727,851 (-)NCBI
RefSeq Acc Id: XM_063285649   ⟹   XP_063141719
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84154,460,510 - 154,727,851 (-)NCBI
RefSeq Acc Id: XP_006237292   ⟸   XM_006237230
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AIL7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000012397   ⟸   ENSRNOT00000012397
Ensembl Acc Id: ENSRNOP00000070778   ⟸   ENSRNOT00000091473
RefSeq Acc Id: XP_038963076   ⟸   XM_039107148
- Peptide Label: isoform X1
- UniProtKB: F1LPE9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000092904   ⟸   ENSRNOT00000102886
Ensembl Acc Id: ENSRNOP00000094050   ⟸   ENSRNOT00000109038
Ensembl Acc Id: ENSRNOP00000084657   ⟸   ENSRNOT00000115061
RefSeq Acc Id: NP_001381813   ⟸   NM_001394884
- Peptide Label: isoform 3
- UniProtKB: A0A8I6A0L5 (UniProtKB/TrEMBL),   A6IL87 (UniProtKB/TrEMBL),   F1LPE9 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001381812   ⟸   NM_001394883
- Peptide Label: isoform 2
- UniProtKB: A0A0G2JYT1 (UniProtKB/TrEMBL),   F1LPE9 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001381811   ⟸   NM_001394882
- Peptide Label: isoform 1
- UniProtKB: A0A8I6GKZ4 (UniProtKB/TrEMBL),   F1LPE9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141714   ⟸   XM_063285644
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AIL7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141719   ⟸   XM_063285649
- Peptide Label: isoform X8
- UniProtKB: A6IL88 (UniProtKB/TrEMBL),   A0A8I6AIL7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141717   ⟸   XM_063285647
- Peptide Label: isoform X6
- UniProtKB: F1LPE9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141718   ⟸   XM_063285648
- Peptide Label: isoform X7
- UniProtKB: A6IL89 (UniProtKB/TrEMBL),   A0A8I6AIL7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141716   ⟸   XM_063285646
- Peptide Label: isoform X5
- UniProtKB: A0A8I6AIL7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141715   ⟸   XM_063285645
- Peptide Label: isoform X4
- UniProtKB: F1LPE9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000100714   ⟸   ENSRNOT00000135155
Protein Domains
FIP-RBD

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q811U3-F1-model_v2 AlphaFold Q811U3 1-948 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693353
Promoter ID:EPDNEW_R3875
Type:multiple initiation site
Name:Erc1_1
Description:ELKS/RAB6-interacting/CAST family member 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04152,380,207 - 152,380,267EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:628733 AgrOrtholog
BioCyc Gene G2FUF-43216 BioCyc
Ensembl Genes ENSRNOG00000009264 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000012397 ENTREZGENE
  ENSRNOT00000091473 ENTREZGENE
  ENSRNOT00000102886 ENTREZGENE
  ENSRNOT00000109038 ENTREZGENE
  ENSRNOT00000115061 ENTREZGENE
Gene3D-CATH 1.10.287.1490 UniProtKB/Swiss-Prot
InterPro ELKS/CAST UniProtKB/Swiss-Prot
NCBI Gene 266806 ENTREZGENE
PANTHER ELKS/RAB6-INTERACTING/CAST FAMILY MEMBER 1 UniProtKB/Swiss-Prot
  ELKS/RAB6-INTERACTING/CAST PROTEIN UniProtKB/Swiss-Prot
Pfam Cast UniProtKB/Swiss-Prot
PhenoGen Erc1 PhenoGen
RatGTEx ENSRNOG00000009264 RatGTEx
Superfamily-SCOP Tropomyosin UniProtKB/Swiss-Prot
UniProt A0A0G2JYT1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A0L5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AIL7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GKZ4 ENTREZGENE, UniProtKB/TrEMBL
  A6IL87 ENTREZGENE, UniProtKB/TrEMBL
  A6IL88 ENTREZGENE, UniProtKB/TrEMBL
  A6IL89 ENTREZGENE, UniProtKB/TrEMBL
  F1LPE9 ENTREZGENE, UniProtKB/TrEMBL
  Q811U3 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q8CIY9 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-25 Erc1  ELKS/RAB6-interacting/CAST family member 1  Rab6ip2  Rab6 interacting protein 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Rab6ip2  Rab6 interacting protein 2  Elks  ELKS protein  Symbol and Name updated 1299863 APPROVED
2003-02-27 Elks  ELKS protein      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_transcript has two alternative splicing variants; one variant generates a longer transcript that does not bind to RIMs 632516