Erc1 (ELKS/RAB6-interacting/CAST family member 1)

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Gene: Erc1 (ELKS/RAB6-interacting/CAST family member 1) Rattus norvegicus

Analyze

Symbol:

Erc1

Name:

ELKS/RAB6-interacting/CAST family member 1

RGD ID:

628733

Description:

Enables PDZ domain binding activity. Predicted to be involved in several processes, including I-kappaB phosphorylation; chemical synaptic transmission; and maintenance of presynaptic active zone structure. Located in several cellular components, including postsynaptic density; presynaptic active zone cytoplasmic component; and synaptic vesicle. Orthologous to human ERC1 (ELKS/RAB6-interacting/CAST family member 1); PARTICIPATES IN interleukin-1 signaling pathway; nuclear factor kappa B signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 2,5-hexanedione.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

CAST; Cast2; CAZ-associated structural protein 2; Elks; ERC; ERC protein 1; ERC-1; ERC1b; Rab6 interacting protein 2; Rab6-interacting protein 2; Rab6ip2; RIM-Binding Protein

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	4	152,763,664 - 153,055,706 (-)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	4	152,767,419 - 153,055,639 (-)	Ensembl
Rnor_6.0	4	152,087,393 - 152,380,023 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	152,087,379 - 152,380,184 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	219,174,705 - 219,465,108 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	155,931,377 - 156,221,104 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	4	156,234,169 - 156,465,945 (-)	NCBI
Celera	4	141,623,820 - 141,910,539 (-)	NCBI		Celera
Cytogenetic Map	4	q42	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Hyperphosphatemic Familial Tumoral Calcinosis 1 (ISO)

Macrocephaly, Dysmorphic Facies, and Psychomotor Retardation (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2,5-hexanedione (EXP)

3,3',4,4'-tetrachlorobiphenyl (ISO)

4-hydroxyphenyl retinamide (ISO)

5-aza-2'-deoxycytidine (ISO)

acetamide (EXP)

acrolein (ISO)

aflatoxin B1 (ISO)

aflatoxin B2 (ISO)

alpha-pinene (ISO)

ammonium chloride (EXP)

amphetamine (EXP)

aristolochic acid (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP)

cadmium dichloride (ISO)

cisplatin (ISO)

clofibrate (EXP)

diarsenic trioxide (ISO)

dicrotophos (ISO)

endosulfan (EXP)

entinostat (ISO)

ethanol (ISO)

folic acid (ISO)

genistein (ISO)

geraniol (ISO)

glycidol (EXP)

hydroquinone O-beta-D-glucopyranoside (ISO)

irinotecan (ISO)

ivermectin (ISO)

methapyrilene (ISO)

N,N-diethyl-m-toluamide (EXP)

N-nitrosodiethylamine (EXP)

nickel atom (ISO)

ozone (ISO)

permethrin (EXP)

pirinixic acid (ISO)

potassium chromate (ISO)

sunitinib (ISO)

testosterone enanthate (ISO)

thimerosal (ISO)

torcetrapib (ISO)

triptonide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

I-kappaB phosphorylation (IEA,ISO)

induction of synaptic vesicle exocytosis by positive regulation of presynaptic cytosolic calcium ion concentration (IEA)

maintenance of presynaptic active zone structure (IBA)

neuromuscular synaptic transmission (IBA)

protein transport (IEA)

regulation of synaptic plasticity (IBA)

retrograde transport, endosome to Golgi (ISO,ISS)

synaptic vesicle priming (ISO)

Cellular Component

centrosome (IEA,ISO)

ciliary basal body (IEA,ISO)

cytoplasm (IEA,ISO,ISS)

cytoskeleton of presynaptic active zone (IBA)

GABA-ergic synapse (ISO)

glutamatergic synapse (ISO)

Golgi membrane (IEA)

IkappaB kinase complex (IEA,ISO)

membrane (IDA,IEA)

postsynaptic density (IDA)

presynaptic active zone cytoplasmic component (IDA)

synapse (ISO,ISS)

synaptic vesicle (IDA)

Molecular Function

PDZ domain binding (IDA)

protein binding (IPI,ISO)

small GTPase binding (ISO,ISS)

structural constituent of presynaptic active zone (IBA,ISO)

voltage-gated calcium channel activity involved in positive regulation of presynaptic cytosolic calcium levels (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

interleukin-1 signaling pathway (ISO)

nuclear factor kappa B signaling pathway (ISO)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Kaeser PS, etal., Cell. 2011 Jan 21;144(2):282-95. doi: 10.1016/j.cell.2010.12.029.
3.	Lu J, etal., J Mol Biol. 2005 Sep 16;352(2):455-66.
4.	MGD data from the GO Consortium
5.	Mochida S, etal., Cell Rep. 2016 Sep 13;16(11):2901-2913. doi: 10.1016/j.celrep.2016.08.020.
6.	Pipeline to import Pathway Interaction Database annotations from NCI into RGD
7.	RGD automated data pipeline
8.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9.	RGD automated import pipeline for gene-chemical interactions
10.	Wang Y, etal., Proc Natl Acad Sci U S A 2002 Oct 29;99(22):14464-9.

Additional References at PubMed

PMID:11929610	PMID:14723704	PMID:15218148	PMID:16716196	PMID:19515363	PMID:21700703	PMID:21712437	PMID:23791195	PMID:25209271	PMID:25468996	PMID:27224062	PMID:27253063
PMID:27537483	PMID:28264913

Genomics

Comparative Map Data

Erc1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	4	152,763,664 - 153,055,706 (-)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	4	152,767,419 - 153,055,639 (-)	Ensembl
Rnor_6.0	4	152,087,393 - 152,380,023 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	152,087,379 - 152,380,184 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	219,174,705 - 219,465,108 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	155,931,377 - 156,221,104 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	4	156,234,169 - 156,465,945 (-)	NCBI
Celera	4	141,623,820 - 141,910,539 (-)	NCBI		Celera
Cytogenetic Map	4	q42	NCBI

ERC1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	12	990,509 - 1,495,933 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	12	990,030 - 1,495,933 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	12	1,100,389 - 1,605,099 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	970,665 - 1,472,958 (+)	NCBI	NCBI36		hg18	NCBI36
Celera	12	2,707,077 - 3,211,656 (+)	NCBI
Cytogenetic Map	12	p13.33	NCBI
HuRef	12	952,225 - 1,457,980 (+)	NCBI		HuRef
CHM1_1	12	1,099,408 - 1,604,090 (+)	NCBI		CHM1_1

Erc1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	119,547,757 - 119,830,985 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	6	119,547,757 - 119,825,128 (-)	Ensembl
GRCm38	6	119,570,796 - 119,848,184 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	119,570,796 - 119,848,167 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	119,520,814 - 119,798,168 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	6	119,540,864 - 119,813,753 (-)	NCBI			mm8
Celera	6	121,405,104 - 121,685,429 (-)	NCBI		Celera
Cytogenetic Map	6	F1	NCBI

Erc1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955454	3,586,667 - 4,031,130 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955454	3,584,910 - 4,036,276 (+)	NCBI	ChiLan1.0	ChiLan1.0

ERC1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	12	1,027,967 - 1,550,182 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	1,027,967 - 1,545,431 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	12	1,066,034 - 1,597,562 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

ERC1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	43,004,243 - 43,544,260 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	43,038,544 - 43,678,843 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	3,140,420 - 3,679,170 (-)	NCBI
ROS_Cfam_1.0	27	43,365,560 - 43,911,683 (+)	NCBI
UMICH_Zoey_3.1	27	43,303,937 - 43,842,830 (+)	NCBI
UNSW_CanFamBas_1.0	27	43,275,814 - 43,815,242 (+)	NCBI
UU_Cfam_GSD_1.0	27	2,498,548 - 3,038,339 (-)	NCBI

Erc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	107,470,207 - 107,982,754 (-)	NCBI
SpeTri2.0	NW_004936606	1,201,420 - 1,713,894 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ERC1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	68,223,389 - 68,608,703 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	68,223,722 - 68,608,705 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	70,490,274 - 70,873,482 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ERC1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	989,376 - 1,530,470 (+)	NCBI	ChlSab1.1		chlSab2
ChlSab1.1 Ensembl	11	1,030,294 - 1,524,817 (+)	Ensembl	ChlSab1.1		chlSab2
Vero_WHO_p1.0	NW_023666063	6,812,077 - 7,356,786 (-)	NCBI	Vero_WHO_p1.0

Erc1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624735	11,398,603 - 11,907,553 (-)	NCBI	HetGla_female_1.0		hetGla2

Position Markers

D4Rat107

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	152,925,326 - 152,925,562 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	152,249,616 - 152,249,849	NCBI	Rnor6.0
Rnor_5.0	4	219,336,960 - 219,337,193	UniSTS	Rnor5.0
RGSC_v3.4	4	156,090,003 - 156,090,237	RGD	RGSC3.4
RGSC_v3.4	4	156,090,004 - 156,090,237	UniSTS	RGSC3.4
RGSC_v3.1	4	156,334,845 - 156,335,078	RGD
Celera	4	141,780,453 - 141,780,686	UniSTS
RH 3.4 Map	4	978.8	RGD
RH 3.4 Map	4	978.8	UniSTS
RH 2.0 Map	4	972.5	RGD
SHRSP x BN Map	4	77.0299	RGD
Cytogenetic Map	4	q42	UniSTS

BE108954

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	153,004,831 - 153,005,011 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	152,329,598 - 152,329,777	NCBI	Rnor6.0
Rnor_5.0	4	219,416,860 - 219,417,039	UniSTS	Rnor5.0
RGSC_v3.4	4	156,170,532 - 156,170,711	UniSTS	RGSC3.4
Celera	4	141,859,984 - 141,860,163	UniSTS
RH 3.4 Map	4	978.9	UniSTS
Cytogenetic Map	4	q42	UniSTS

BE095665

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	152,868,812 - 152,868,967 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	152,193,101 - 152,193,255	NCBI	Rnor6.0
Rnor_5.0	4	219,280,713 - 219,280,867	UniSTS	Rnor5.0
RGSC_v3.4	4	156,032,819 - 156,032,973	UniSTS	RGSC3.4
Celera	4	141,724,043 - 141,724,197	UniSTS
RH 3.4 Map	4	978.7	UniSTS
Cytogenetic Map	4	q42	UniSTS

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	11320076	180699135	Rat
737821	Hcar9	Hepatocarcinoma resistance QTL 9	3.7		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	4	109866907	167139601	Rat
631674	Iddm14	Insulin dependent diabetes mellitus QTL 14			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	4	64528739	157573521	Rat
631683	Bp116	Blood pressure QTL 116		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	124303370	169303370	Rat
737978	Pia23	Pristane induced arthritis QTL 23	5.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	131730738	167139601	Rat
6478718	Anxrr34	Anxiety related response QTL 34		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	144639524	182687754	Rat
6478748	Anxrr42	Anxiety related response QTL 42		0.28008	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	144639524	182687754	Rat
6478754	Anxrr43	Anxiety related response QTL 43		0.14035	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	144639524	182687754	Rat
6478760	Anxrr45	Anxiety related response QTL 45		0.06717	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	110870972	155870972	Rat
6478763	Anxrr46	Anxiety related response QTL 46		0.07428	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	110870972	155870972	Rat
6478778	Anxrr51	Anxiety related response QTL 51		0.25384	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	4	124778595	169778595	Rat
1298524	Oia8	Oil induced arthritis QTL 8			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	138503169	173369699	Rat
738009	Sach4	Saccharine consumption QTL 4	4.9	0.000016	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	4	59948935	154902892	Rat
738016	Alc16	Alcohol consumption QTL 16	3.6	0.00015	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	59948935	154902892	Rat
6478693	Anxrr32	Anxiety related response QTL 32		0.00092	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	4	144639524	182687754	Rat
6478700	Anxrr33	Anxiety related response QTL 33		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	144639524	182687754	Rat
738031	Alc14	Alcohol consumption QTL 14	7.6	0.00003	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	59948935	154902892	Rat
631511	Pia7	Pristane induced arthritis QTL 7	4.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	131730738	167139601	Rat
634342	Cia24	Collagen induced arthritis QTL 24	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	146565735	175236377	Rat
634347	Hcar8	Hepatocarcinoma resistance QTL 8	5.8		liver integrity trait (VT:0010547)	liver tumorous lesion area to total liver area ratio (CMO:0001075)	4	123143783	168143783	Rat
7411558	Bw133	Body weight QTL 133	13.84	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	125590636	170590636	Rat
7207480	Bss105	Bone structure and strength QTL 105	8.1		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	4	109827074	154827074	Rat
1331738	Bp209	Blood pressure QTL 209	2.979		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	138503169	179293946	Rat
1331802	Srn5	Serum renin concentration QTL 5	3.045		renin activity (VT:0005581)	plasma renin activity level (CMO:0000116)	4	119428175	157578333	Rat
1358202	Gluco11	Glucose level QTL 11	2.4	0.02	adipocyte glucose uptake trait (VT:0004185)	absolute change in adipocyte glucose uptake (CMO:0000873)	4	85379421	167139601	Rat
1549827	Scl46	Serum cholesterol level QTL 46	3.5		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	4	132396220	177396220	Rat
1549832	Bss3	Bone structure and strength QTL 3	11		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	4	109827074	154827074	Rat
1581574	Eae20	Experimental allergic encephalomyelitis QTL 20	7.8		nervous system integrity trait (VT:0010566)	percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)	4	153031106	158841762	Rat
1576305	Emca6	Estrogen-induced mammary cancer QTL 6	5.8		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	4	44463720	155883716	Rat
1576316	Ept5	Estrogen-induced pituitary tumorigenesis QTL 5	3.8		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	4	83428419	177635233	Rat
1578674	Bmd12	Bone mineral density QTL 12	3.8		femur mineral mass (VT:0010011)	cortical volumetric bone mineral density (CMO:0001730)	4	135699135	180699135	Rat
61362	Oia2	Oil induced arthritis QTL 2		0.001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	138503169	173369699	Rat
61422	Cia13	Collagen induced arthritis QTL 13	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	132642577	167139601	Rat
61446	Coreg2	Compensatory renal growth QTL 2	3.5		kidney mass (VT:0002707)	compensatory renal growth score (CMO:0001894)	4	148423102	157580971	Rat
724558	Plsm2	Polydactyly-luxate syndrome (PLS) morphotypes QTL 2		0.0003	hindlimb integrity trait (VT:0010563)	hind foot phalanges count (CMO:0001949)	4	132422778	177422778	Rat
2303623	Vencon2	Ventilatory control QTL 2	3.8		respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	4	135204660	180204660	Rat
634335	Anxrr16	Anxiety related response QTL 16	7.22		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	4	93308457	167139447	Rat
724535	Cm18	Cardiac mass QTL 18	2.6		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	4	118856416	163856416	Rat
12798519	Anxrr54	Anxiety related response QTL 54	2.54	0.05	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	114627026	159627026	Rat
61451	Ciaa4	CIA Autoantibody QTL 4	3.1		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	4	126395976	167139601	Rat
10401796	Kidm48	Kidney mass QTL 48			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	4	145568712	182687754	Rat
1582237	Kidm34	Kidney mass QTL 34	4	0.0001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	4	148090542	168069246	Rat
1331759	Hrtrt13	Heart rate QTL 13	3.54628		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	4	110275411	168266883	Rat
12798525	Anxrr57	Anxiety related response QTL 57	3.21	0.05	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	147278504	167139601	Rat
2293659	Bmd35	Bone mineral density QTL 35	4.5	0.0001	femur strength trait (VT:0010010)	femoral neck ultimate force (CMO:0001703)	4	137755016	181392681	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	77
Count of miRNA genes:	58
Interacting mature miRNAs:	67
Transcripts:	ENSRNOT00000012397
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		28	11	5	8	5	1	1	74	22	34	11	1
Low	3	15	46	36	11	36	7	10		13	7		7
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001394882	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001394883	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001394884	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_170788	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_172210	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237224	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237225	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237226	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237227	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237228	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237229	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237230	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237231	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592490	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592491	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107147	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107148	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107150	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107151	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107152	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107154	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC106348	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF541926	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY174115	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473964	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000149	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000012397 ⟹ ENSRNOP00000012397

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	152,768,451 - 153,055,533 (-)	Ensembl
Rnor_6.0 Ensembl	4	152,092,180 - 152,380,023 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000091473 ⟹ ENSRNOP00000070778

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	152,767,419 - 153,055,533 (-)	Ensembl
Rnor_6.0 Ensembl	4	152,087,379 - 152,380,184 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000102886 ⟹ ENSRNOP00000092904

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	152,814,772 - 153,055,639 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000109038 ⟹ ENSRNOP00000094050

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	152,767,419 - 153,055,533 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000115061 ⟹ ENSRNOP00000084657

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	152,767,419 - 153,055,533 (-)	Ensembl

RefSeq Acc Id:

NM_170788 ⟹ NP_740769

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	152,768,451 - 153,055,533 (-)	NCBI
Rnor_6.0	4	152,092,180 - 152,380,023 (-)	NCBI
Rnor_5.0	4	219,174,705 - 219,465,108 (-)	NCBI
RGSC_v3.4	4	155,931,377 - 156,221,104 (-)	RGD
Celera	4	141,623,820 - 141,910,539 (-)	RGD

Sequence:

show sequence

GGCATTTGTCGTTTCCGACCGGGCTCTGCGCTCCCGGCCCTGGCTGGGCAGGGCAGAGTGCCCC
TGGGGAGGGGCGGAGCCGTAGATATGGCATAAGATATTTCTTCAAGATTGGACAGCTGGTGACC
TGCTATTTCTGACAGCCTTAAGCTGACTTTATAGCCATAGAGAAACCTCACGGACTTGTATTGT
TGTTTTCTACTCATACCATTTCTGGCACCTAAGTTCACCCTGCAACCATGTATGGAAGTGCTCG
GTCAGTGGGGAAAGTGGAACCAAGCAGCCAGAGTCCTGGGCGATCACCTCGGCTTCCTCGGTCC
CCTCGCTTAGGTCATCGGCGAACAAATAGCACAGGAGGGAGTTCTGGAAACAGTGTTGGAGGTG
GCAGTGGGAAAACCCTTTCAATGGAGAATATACAGTCCTTAAATGCTGCCTATGCTACATCTGG
CCCTATGTACCTAAGTGACCATGAAAACGTGGGTGCAGAAACACCTAAAAGCACCATGACACTT
GGCCGTTCTGGAGGACGCCTGCCTTACGGGGTTAGGATGACTGCTATGGGCAGCAGCCCCAACA
TAGCAAGCAGTGGGGTTGCTAGTGATACCATAGCGTTTGGAGAGCATCACCTCCCTCCTGTTAG
TATGGCGTCCACGGTACCTCACTCTCTTCGTCAAGCAAGAGATAACACCATCATGGATCTGCAG
ACGCAGCTGAAGGAAGTATTAAGAGAAAACGATCTTTTGAGGAAAGATGTGGAAGTAAAGGAGA
GCAAATTAAGTTCTTCGATGAATAGCATCAAGACCTTCTGGAGTCCAGAGCTGAAGAAAGAGCG
GGCCTTGAGAAAAGACGAAGCTTCCAAAATCACCATTTGGAAGGAGCAGTACCGAGTTGTGCAG
GAGGAAAACCAGCACATGCAGATGACAATCCAGGCTCTCCAGGATGAGCTGCGCATTCAGAGGG
ACTTGAATCAGCTGTTTCAGCAAGATAGCAGCAGTCGGACTGGGGAGCCTTGTGTGGCAGAGCT
CACGGAGGAGAACTTCCAGAGGCTGCATGCTGAGCACGAGAGGCAAGCCAAGGAGCTGTTTCTC
CTGCGGAAGACCCTGGAGGAAATGGAGCTGAGGATTGAGACTCAGAAGCAAACCCTCAATGCTC
GGGATGAGTCCATTAAGAAGCTTCTGGAGATGCTACAGAGCAAAGGACTTTCTGCCAAAGCCAC
AGAGGAAGACCATGAGAGAACGAGACGGCTGGCGGAGGCAGAGATGCACGTCCACCACCTAGAG
AGTCTTTTGGAGCAGAAGGAGAAGGAGAATAATATGTTGAGAGAGGAGATGCACCGGAGATTTG
AGAATGCCCCTGACTCTGCCAAGACAAAAGCCCTGCAAACCGTTATTGAAATGAAGGATTCAAA
AATTTCTTCCATGGAGCGTGGGCTCCGAGACCTGGAAGAGGAAATTCAGATGCTGAAATCAAAC
GGGGCTTTGAGCACAGAAGAGCGGGAGGAGGAGATGAAGCAAATGGAGGTGTACAGGAGCCACT
CTAAGTTCATGAAAAATAAGATTGGCCAGGTGAAACAGGAATTGTCCAGAAAGGACACAGAATT
ACTAGCCTTACAGACAAAGCTAGAAACTCTGACGAACCAATTCTCAGACAGCAAGCAGCATATT
GAGGTGCTGAAAGAGTCCCTCACTGCTAAGGAACAAAGGGCCGCCATCCTGCAGACTGAGGTGG
ATGCTCTTCGATTGCGTTTGGAAGAAAAGGAGACGATGCTGAATAAAAAAACCAAACAAATCCA
AGATATGGCTGAGGAGAAGGGCACACAAGCTGGAGAGATACACGACCTCAAGGACATGCTGGAC
GTGAAGGAGCGGAAGGTCAATGTTCTGCAGAAGAAGATAGAAAATCTTCAGGAGCAGCTAAGAG
ATAAGGAGAAGCAGATGAGCAGCCTGAAAGAGCGAGTCAAGTCTCTGCAGGCAGACACCACCAA
CACCGACACAGCTCTGACGACGCTGGAGGAGGCCCTTGCAGATAAAGAACGAACAATTGAACGC
TTAAAGGAACAACGGGACAGAGATGAGCGAGAGAAGCAAGAGGAGATTGATACCTACAAAAAAG
ATCTTAAAGACTTGAAAGAAAAAGTCAGCCTATTGCAAGGAGACCTCTCAGAGAAGGAGGCTTC
TCTTTTGGATCTCAAAGAGCATGCTTCTTCCCTGGCTTCCTCAGGACTGAAAAAGGACTCACGG
CTCAAGACCCTAGAGATCGCTCTTGAGCAGAAGAAGGAAGAGTGCCTAAAAATGGAATCACAGT
TGAAAAAGGCACATGAAGCAACACTGGAAGCCAGAGCCAGCCCAGAGATGAGTGACCGAATACA
GCAATTGGAGAGAGAGATTGCCAGGTACAAAGATGAATCCAGCAAGGCCCAAACAGAAGTTGAC
CGTCTCTTGGAAATCTTGAAAGAGGTGGAAAATGAGAAGAATGACAAAGATAAGAAGATAGCTG
AGTTGGAAAGTCTCACCTCAAGGCAGGTGAAAGACCAGAATAAGAAGGTAGCGAATCTGAAGCA
CAAGGAGCAGGTGGAGAAGAAGAAAAGTGCGCAGATGCTGGAGGAGGCCCGGAGGAGGGAGGAC
AGTCTCAGCGACAGCTCTCAGCAGCTGCAGGTGGAAGAGCTGTTGATGGCTATGGAGAAGGTGA
AGCAAGAGCTGGAGTCCATGAAAGCTAAGCTGTCCTCCACCCAGCAGTCTCTGGCAGAGAAGGA
GACACATCTAACCAACCTCCGGGCAGAGAGAAGGAAACACTTAGAGGAGGTTCTGGAGATGAAA
CAAGAAGCTCTTCTGGCTGCCATTAGCGAAAAGGACGCTAACATAGCCCTCCTGGAGCTCTCCT
CCTCGAAGAAAAAGACCCAAGAAGAAGTGGCCGCACTGAAACGGGAAAAGGACCGCCTGGTGCA
GCAGCTCAAACAGCAGACACAAAATCGAATGAAACTAATGGCTGACAACTATGAAGATGACCAC
TTCAGATCCTCCCGTTCCAATCAGACGAACCATAAACCCTCCCCAGACCAGGATGAGGAGGAGG
GTATATGGGCATAGCCAATCAGATGCTCTTAGTTCAGCCATTTTGTTCAGAACGATCATCCAGC
CCCTTTTAGAACTTGACCAAAATAGAAGCAAGTTAAAGTTGTATATTGGACACCTGACAGCCCT
CTGCCATGACCGAGACCCCTTAATCCTCCGTGGACTCACTCCACCAGCTTCCTATAATGCAGAT
GGTGAACAGGCAGCTTGGGAGAATGAGCTGCAGAAGATGACTCAGGAGCAGCTTCAGAACGAGT
TAGAGAAAGTTGAAGGGGACAATGCAGAGCTGCAGGAGTTCGCCAACACCATTCTCCAGCAGAT
AGCTGATCACTGCCCTGACATCCTCGAACCTCGTGCC

hide sequence

RefSeq Acc Id:

XM_006237224 ⟹ XP_006237286

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	152,763,664 - 153,055,704 (-)	NCBI
Rnor_6.0	4	152,087,393 - 152,380,021 (-)	NCBI
Rnor_5.0	4	219,174,705 - 219,465,108 (-)	NCBI

Sequence:

show sequence

CATTTGTCGTTTCCGACCGGGCTCTGCGCTCCCGGCCCTGGCTGGGCAGGGCAGAGTGCCCCTG
GGGAGGGGCGGAGCCGTAGATATGGCATAAGATATTTCTTCAAGATTGGACAGCTGGTGACCTG
CTATTTCTGACAGCCTTAAGCTGACTTTATAGCCATAGAGAAACCTCACGGACTTGTATTGTTG
TTTTCTACTCATACCATTTCTGGCACCTAAGTTCACCCTGCAACCATGTATGGAAGTGCTCGGT
CAGTGGGGAAAGTGGAACCAAGCAGCCAGAGTCCTGGGCGATCACCTCGGCTTCCTCGGTCCCC
TCGCTTAGGTCATCGGCGAACAAATAGCACAGGAGGGAGTTCTGGAAACAGTGTTGGAGGTGGC
AGTGGGAAAACCCTTTCAATGGAGAATATACAGTCCTTAAATGCTGCCTATGCTACATCTGGCC
CTATGTACCTAAGTGACCATGAAAACGTGGGTGCAGAAACACCTAAAAGCACCATGACACTTGG
CCGTTCTGGAGGACGCCTGCCTTACGGGGTTAGGATGACTGCTATGGGCAGCAGCCCCAACATA
GCAAGCAGTGGGGTTGCTAGTGATACCATAGCGTTTGGAGAGCATCACCTCCCTCCTGTTAGTA
TGGCGTCCACGGTACCTCACTCTCTTCGTCAAGCAAGAGATAACACCATCATGGATCTGCAGAC
GCAGCTGAAGGAAGTATTAAGAGAAAACGATCTTTTGAGGAAAGATGTGGAAGTAAAGGAGAGC
AAATTAAGTTCTTCGATGAATAGCATCAAGACCTTCTGGAGTCCAGAGCTGAAGAAAGAGCGGG
CCTTGAGAAAAGACGAAGCTTCCAAAATCACCATTTGGAAGGAGCAGTACCGAGTTGTGCAGGA
GGAAAACCAGCACATGCAGATGACAATCCAGGCTCTCCAGGATGAGCTGCGCATTCAGAGGGAC
TTGAATCAGCTGTTTCAGCAAGATAGCAGCAGTCGGACTGGGGAGCCTTGTGTGGCAGAGCTCA
CGGAGGAGAACTTCCAGAGGCTGCATGCTGAGCACGAGAGGCAAGCCAAGGAGCTGTTTCTCCT
GCGGAAGACCCTGGAGGAAATGGAGCTGAGGATTGAGACTCAGAAGCAAACCCTCAATGCTCGG
GATGAGTCCATTAAGAAGCTTCTGGAGATGCTACAGAGCAAAGGACTTTCTGCCAAAGCCACAG
AGGAAGACCATGAGAGAACGAGACGGCTGGCGGAGGCAGAGATGCACGTCCACCACCTAGAGAG
TCTTTTGGAGCAGAAGGAGAAGGAGAATAATATGTTGAGAGAGGAGATGCACCGGAGATTTGAG
AATGCCCCTGACTCTGCCAAGACAAAAGCCCTGCAAACCGTTATTGAAATGAAGGATTCAAAAA
TTTCTTCCATGGAGCGTGGGCTCCGAGACCTGGAAGAGGAAATTCAGATGCTGAAATCAAACGG
GGCTTTGAGCACAGAAGAGCGGGAGGAGGAGATGAAGCAAATGGAGGTGTACAGGAGCCACTCT
AAGTTCATGAAAAATAAGGTAGAGCAACTGAAGGAGGAGCTAAGTTCCAAAGATGCTCAAGGGG
AGGAGCTGAAAAAGAGAGCGGCTGGTCTTCAGTCTGAGATTGGCCAGGTGAAACAGGAATTGTC
CAGAAAGGACACAGAATTACTAGCCTTACAGACAAAGCTAGAAACTCTGACGAACCAATTCTCA
GACAGCAAGCAGCATATTGAGGTGCTGAAAGAGTCCCTCACTGCTAAGGAACAAAGGGCCGCCA
TCCTGCAGACTGAGGTGGATGCTCTTCGATTGCGTTTGGAAGAAAAGGAGACGATGCTGAATAA
AAAAACCAAACAAATCCAAGATATGGCTGAGGAGAAGGGCACACAAGCTGGAGAGATACACGAC
CTCAAGGACATGCTGGACGTGAAGGAGCGGAAGGTCAATGTTCTGCAGAAGAAGATAGAAAATC
TTCAGGAGCAGCTAAGAGATAAGGAGAAGCAGATGAGCAGCCTGAAAGAGCGAGTCAAGTCTCT
GCAGGCAGACACCACCAACACCGACACAGCTCTGACGACGCTGGAGGAGGCCCTTGCAGATAAA
GAACGAACAATTGAACGCTTAAAGGAACAACGGGACAGAGATGAGCGAGAGAAGCAAGAGGAGA
TTGATACCTACAAAAAAGATCTTAAAGACTTGAAAGAAAAAGTCAGCCTATTGCAAGGAGACCT
CTCAGAGAAGGAGGCTTCTCTTTTGGATCTCAAAGAGCATGCTTCTTCCCTGGCTTCCTCAGGA
CTGAAAAAGGACTCACGGCTCAAGACCCTAGAGATCGCTCTTGAGCAGAAGAAGGAAGAGTGCC
TAAAAATGGAATCACAGTTGAAAAAGGCACATGAAGCAACACTGGAAGCCAGAGCCAGCCCAGA
GATGAGTGACCGAATACAGCAATTGGAGAGAGAGATGGCCAGGTACAAAGATGAATCCAGCAAG
GCCCAAACAGAAGTTGACCGTCTCTTGGAAATCTTGAAAGAGGTGGAAAATGAGAAGAATGACA
AAGATAAGAAGATAGCTGAGTTGGAAAGTCTCACCTCAAGGCAGGTGAAAGACCAGAATAAGAA
GGTAGCGAATCTGAAGCACAAGGAGCAGGTGGAGAAGAAGAAAAGTGCGCAGATGCTGGAGGAG
GCCCGGAGGAGGGAGGACAGTCTCAGCGACAGCTCTCAGCAGCTGCAGGACAGTCTCCGTAAGA
AGGATGACAGGATTGAAGAGCTGGAAGAAGCACTGAGAGAAAGTGTACAGATAACTGCAGAGCG
GGAAATGGTGCTGGCACAAGAGGAATCAGCCAGGACCAATGCTGAGAAACAGGTGGAAGAGCTG
TTGATGGCTATGGAGAAGGTGAAGCAAGAGCTGGAGTCCATGAAAGCTAAGCTGTCCTCCACCC
AGCAGTCTCTGGCAGAGAAGGAGACACATCTAACCAACCTCCGGGCAGAGAGAAGGAAACACTT
AGAGGAGGTTCTGGAGATGAAACAAGAAGCTCTTCTGGCTGCCATTAGCGAAAAGGACGCTAAC
ATAGCCCTCCTGGAGCTCTCCTCCTCGAAGAAAAAGACCCAAGAAGAAGTGGCCGCACTGAAAC
GGGAAAAGGACCGCCTGGTGCAGCAGCTCAAACAGCAGACACAAAATCGAATGAAACTAATGGC
TGACAACTATGAAGATGACCACTTCAGATCCTCCCGTTCCAATCAGACGAACCATAAACCCTCC
CCAGACCAGATCATCCAGCCCCTTTTAGAACTTGACCAAAATAGAAGCAAGTTAAAGTTGTATA
TTGGACACCTGACAGCCCTCTGCCATGACCGAGACCCCTTAATCCTCCGTGGACTCACTCCACC
AGCTTCCTATAATGCAGATGGTGAACAGGCAGCTTGGGAGAATGAGCTGCAGAAGATGACTCAG
GAGCAGCTTCAGAACGAGTTAGAGAAAGTTGAAGGGGACAATGCAGAGCTGCAGGAGTTCGCCA
ACACCATTCTCCAGCAGATAGCTGATCACTGCCCTGACATCCTCGAACAAGTTGTCAATGCCCT
GGAAGAGTCCTCCTGACATGCTCCAAGAAAGGTGACCAAGGAGCCAGAGAGGAGAACCTGAGGA
ACGGGTGTCTGGGCCGCCCCATCCTAGACCCTGCCAGCTGGGCGTGCCAGTCCAGCCATCTGTG
TCTGTCTCTGCCTTCCGCTTTGAATGCTGCCTGCACACGTCTCCTGGTCTCCATGAAAAACTGC
CCTTGGCGTCAGCAGTGGAGGGCTGGGGGTGCACTCCGCCCTTCCAGAAACAGGAAGCAGAAGC
CCACTCAGGTTCTGTGCTTTGAAAGCTTGGAGCTGAAGCATTAGCATGAGTGCTTTCTCCTCGG
AGGGTAGAGAAGGAGGAAGGGTGACCAGGGACGAGAAGAGCGAGTGCTCCTCTCTGTGTCAAGC
TGCCTCGTGTTTACCATGTTTACCGTCATGAACCCCAGGTACAGGCTGGCTTCATGCAGCTTAG
CTCTTGGCCTGTTGCCTCTCTCACCTGCACTGCTTTTAGCTGACAGGAGGAAGATGTTCACAGT
GGTCACCCATCTCACGCTTCTTTAAGGCCTTTGACCTTCCCATGCTGCACGGTTAGGTTAATGT
CTGACTGAAGAGAAGAGGACTTAATGTACAGGGCCTGTTGTCACTGCTTGCAGTTTTGCTCCTC
AGAAGATGTCCCGGAGGGCCAGTCTGATTCCTCCTGAACATTATCCACAATGCTCTCTGCTCCC
CAAGCTGCTGTAGAACAGGGGTTGCTGGTGTCTGTGACCCATCCTGCCTTCTCAGCTTTACTCT
TAAGGAACATTCTCAGAGCCACAGCCTCATAGCCTGCCTAGCAACTGAGTTTGTCTTAATTCAC
ACCCATTCCCTCCTCCATTCATTCATTCAAAAATGTTATGAAATGCCCACTGTATACACATCAG
TGTGCACGGTGCCCATCCTTGGAAAAGGCTCAAATAGGGATGGTGTGGAAGTCCGTGAGACATG
CTCAGTTGAATCATGGCAGTGAACTCATACCTTCTCCCCTCTTCCCAGAAACATCTTCAGACCA
GCATTCTTTGTTCTCCACTCTCATGGCATCTGTGGGCTTGGGTGAGCCACGTCTTTGCTGGGAA
GATCCCATTTGGCAGGTCAGGATTTTTGCTGTCAGTGTTATTGCCCTGAAACATGTTCTGTTTA
AGGAACTGTACATGCTCATTTGCGTCAGCTGACTGCTTAACACACCCATGCGCGCTTCGTGGAC
ATAGCCAGCACTGTGCTGAGCTCAGGCAGAGCCAGTTGAATGTCTCGGCATTTTGCAGACTTTC
CCCCAGGTGTAGAGGACAGCTACCAGACATAGTCAAGCTCTACAAGAGTGCAGCTCATGTCCAG
TTCTTCATCCCTGAAGCAGACGCCTGACGCTGCTGCCTTCTGAGGAGGCTGCTAAGGCCTGCTT
TCTCCCTCTGCCCAGTTACACTCAAAGGAATTTAACACTGCCCACAAATCTCTCACCGCCTTCA
ACCCAGGACATCATGCAGCCACTATTGTCACAGTCACAGCGCTGGCTCCCCTTCTCTGCCACAC
AGTGTTCCTTTGTGGGTGCTGAGAGAGTTCCCGTGAGGGTTCGGTGGACTCTGCCATGGACCTC
TCACAGAGGTGCTTTTGGAGGTCCCAGCCTGGCCACCGGGAATATGGAAATTAGGCCAAAATAT
GATAGTCCTTGCTGCTCATTTCTCAATGTTTTTATTGTCCCGTCCGTAAATCCTGTAGAAGACC
CCCCTGTATTGTAGGATAGGAAGGTTAGAATCTTATTTAATTCTCATAACATAAGGAACCATTA
CCTAGTAACTGCTTCACAGGCTACAGTGGAATCCAGAAAGCTTAGAAGAGTCCAGGCCCACAGA
AGTAGCCTAGCCCACCCCCGCCAGCTGCTGCTCCAGCTGTTCTCTGAGGGACACCATAGGCACG
ACTCCTTATACGTACCTATCTGGTACTTAGTAGAAGTACCACTTGCCACCCTTCCTAACTGGAC
ACATGACCCAGTCCACCACATCCTGCTCCATCGTCCCTCCAGAGAGGCTGCAGGAACCCTGCAG
GACACGCTTGTTGAGAAGGCAAGTTTCTAAGGCAAACCTTGTCTGATTGCTGCACCACAGCAAA
GGATTCTCCTCCTCAGGTGGTGATCCAGCAACTCAAATGGCTCTGGAGACTGTGGAGCTAAAGT
TGAACGTAAATGTAGTCTTCGTGTTGGGCAAAGTCCTAGGGTATCTGGCATTCAGATCCTACTG
ACTACATTCATGAAGCCAATGTTTCCTAAATGCTTAACTGCCACTGCACTGGGACACGCCATTC
CATGACTGTCTTCACGCACGCATGTTCCTTCCAGTAGCTGCCCTCAAGAGCTCACTGCATGTTG
GCTAGGATCATCCCTCACTTCATTCCATCGTCAAGCCTCATAGCTTTTGCACCTAGAGTGAAGG
TGGCCTCCCTCCAGGCCTTTGGAGAAGGGTTAAAGCAAGCATGTGTCACTATATAGGATGTGAT
ACCCACAGACCCAAGTACCAGCAGACCCTGTGTCAGCAGTGTCTACCCCAAGTGACATCATCAA
GATGACAGTAGGAAACGAGGCTGGAAGCCAACCTTGGGCTGCTGGCTCTGCATACCTTAGTAGA
CTCTGTCCCTGGCCCTTGATGAGTGACTGATGGCACATCTGATTGGGATTAGCAAGTATTAAAG
ACATTTAAGATGAGAAGTCAGAGTGGGCTTTAGCAACTCGGAAATGTGAAGGGGTCCGTGGTCC
CTGCCGGCCTTTATGCTCACGCTTGAGAAGGCCCGAGTGTACCTCCTCACCAGCGGGCTTTAGA
AGCCCTGGGAGAGCAGACTGGAATGAGACCACCAGCGGTGTAGCAGGTCGAGATGTGGCTGGCT
GTGTCCTGTCCATCTGTTTGGCCTCCTGGGAAGAAAGCGTTGGCTCAATTTCTTTCTCAGGAGA
GATGAAGTCAGCACAGATGGTTCTCACGTGCTACTGTCCTGCCCTCCACTGTTGACACTGGGAC
TGGCTTGGCATCACACCCTCCTGTTTGTGAAGCACAGACTCACTGGCCTCCCTCCAGGTCCTTG
AAGAAGGGTCAGAGCAAGGATATGTTGCTCCACAGGATGTGACACCCACAGGCCTAAGTCCCAG
CAGACCCTGTGTCAGCAGTCGGTCACTCAAGTCTGCCTCACCTCCTGCCTGAAGAGGCCAGAGC
CATGGAAAAGGAGAAAGAAGGATAAGGCTGTACCACAGGCCTGTCGGGCACCCACTGTCACTGC
CAGTCTCAGAGATTTTGTTTAAAGATTTGTTCTTTCCTGTGAACCAAGAGAACGTTCAGGGAAA
AAGAATATATGCTTCACCTGGGGATCCTTCCGAACAAAATGGCTGTCTGAACTCTTTTTAAACA
GAAACTTTCCAAACTTTTTAGTGTCAAAATTGTAACCAAGTGTCTCCTGATTCTTCCCAATGTG
TTTGGCAAGTGCTGTGACCCTGTTGTAGGTATTTCTCCTCCTGCCTCTTCTGAGGGAGAAGTGA
CTTTAGGGGTTGACTTGAGGGAGCAGGTATCTGTCCCGTCCTGCCACCTCTCTTGTATCTCTGC
TTGTTGATATTGTCTGTGTGATTCAGAGAACGGGGCAGTTACATTGTGTCCATTGTTGAGAATA
TTAAAATATTAAAAAAGTAGTTATAGAACTAAAAAATTAAAGAGCTGTGTTTTAAAAGATGCAA
ACCCATAAATATGTTAACAAAGGGATTCAAGCTATGGGCAGCCTAGCTCCTCCCCCTCCAGGTT
GGTGCGGTGGTAGCCAGGCCAGCCCTTGGGAGACACACTGACCACACCTGAGTTAGGTGACTGC
CTGGGAACAGGACACCTGCCCAGTGGTGCAGTGAGAATCTGGGGCTCGCTCAGAGACTCTCCGT
TGTGTCAGGGTTTTCTCTACATCCTCAGGACCTCTGGGTAGAGGCGTTAAAGTTGGTGACCCCA
GAACCACCCTCACCCTCACATTGGATCAAGCCTCGTGTGCCTAGTGCTATGTTGTAACCTGGGC
TTGAGCCTGGAGCTCCTGCTTGCAAGGCCACAGGACCTCTTCCTGCCCACTTGGTGCTATCTCA
TCATAACCATCTAACAGGGCAGCCTGGTCTCCTGGAGCCTGGGGGCCAGGGGCCGTGGGTGGCC
CTCGGAGCTCAGCTCTCTCTGGCTCCTGATCTTAGATTTTTCCTTTTGAAGCTTTTTAGACCCA
AACTCCCTTGGCTTCAGAGATGTCCGAGTCAGGGAGGGAAGTGAGCCAGGCTGAGGTGAGGAGA
TCCACCACTCTGCCACAGTAAGCACACTAGTCCAGCCCCTCTTCCCTGCCACACCAGTATTACA
TCCATCCTTTAAAGATCTAGTCCCACCTGAGGCACACGTCATCCCTCGGCCCAGCTGCCCCCAG
TGCAGACTAGAAACCCGGGATGGACACACTGACGTTTCTTTGCACCCCTACTTTAGAAGAGGCA
TGTTGCACTTTAGTGGGGAGCCCAGAACACTGGGCACTGGCTTCCTATAGCTTGAGTCCCTGTA
GATAGCAGTGATGGCAGCCTGGTGGTTTGTGTGAAGCAGCTGCAACTGCTGTCTTCAACTGCAC
ACATGTGCAGTTCTAGAGTCAAATTCTGGCCTGGTGATGACATTACAAAGACGCGATCGGTTCA
ACTTTGCCTTGGTAATTATTGTAAACACTTTGTTCAACTTTTTTCTTTTTTATTCACAAACTAA
ATCCATCAGGAAATTATAAACTTATTTAAAAACTG

hide sequence

RefSeq Acc Id:

XM_006237225 ⟹ XP_006237287

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	152,763,664 - 153,055,704 (-)	NCBI
Rnor_6.0	4	152,087,393 - 152,380,021 (-)	NCBI
Rnor_5.0	4	219,174,705 - 219,465,108 (-)	NCBI

Sequence:

show sequence

CATTTGTCGTTTCCGACCGGGCTCTGCGCTCCCGGCCCTGGCTGGGCAGGGCAGAGTGCCCCTG
GGGAGGGGCGGAGCCGTAGATATGGCATAAGATATTTCTTCAAGATTGGACAGCTGGTGACCTG
CTATTTCTGACAGCCTTAAGCTGACTTTATAGCCATAGAGAAACCTCACGGACTTGTATTGTTG
TTTTCTACTCATACCATTTCTGGCACCTAAGTTCACCCTGCAACCATGTATGGAAGTGCTCGGT
CAGTGGGGAAAGTGGAACCAAGCAGCCAGAGTCCTGGGCGATCACCTCGGCTTCCTCGGTCCCC
TCGCTTAGGTCATCGGCGAACAAATAGCACAGGAGGGAGTTCTGGAAACAGTGTTGGAGGTGGC
AGTGGGAAAACCCTTTCAATGGAGAATATACAGTCCTTAAATGCTGCCTATGCTACATCTGGCC
CTATGTACCTAAGTGACCATGAAAACGTGGGTGCAGAAACACCTAAAAGCACCATGACACTTGG
CCGTTCTGGAGGACGCCTGCCTTACGGGGTTAGGATGACTGCTATGGGCAGCAGCCCCAACATA
GCAAGCAGTGGGGTTGCTAGTGATACCATAGCGTTTGGAGAGCATCACCTCCCTCCTGTTAGTA
TGGCGTCCACGGTACCTCACTCTCTTCGTCAAGCAAGAGATAACACCATCATGGATCTGCAGAC
GCAGCTGAAGGAAGTATTAAGAGAAAACGATCTTTTGAGGAAAGATGTGGAAGTAAAGGAGAGC
AAATTAAGTTCTTCGATGAATAGCATCAAGACCTTCTGGAGTCCAGAGCTGAAGAAAGAGCGGG
CCTTGAGAAAAGACGAAGCTTCCAAAATCACCATTTGGAAGGAGCAGTACCGAGTTGTGCAGGA
GGAAAACCAGCACATGCAGATGACAATCCAGGCTCTCCAGGATGAGCTGCGCATTCAGAGGGAC
TTGAATCAGCTGTTTCAGCAAGATAGCAGCAGTCGGACTGGGGAGCCTTGTGTGGCAGAGCTCA
CGGAGGAGAACTTCCAGAGGCTGCATGCTGAGCACGAGAGGCAAGCCAAGGAGCTGTTTCTCCT
GCGGAAGACCCTGGAGGAAATGGAGCTGAGGATTGAGACTCAGAAGCAAACCCTCAATGCTCGG
GATGAGTCCATTAAGAAGCTTCTGGAGATGCTACAGAGCAAAGGACTTTCTGCCAAAGCCACAG
AGGAAGACCATGAGAGAACGAGACGGCTGGCGGAGGCAGAGATGCACGTCCACCACCTAGAGAG
TCTTTTGGAGCAGAAGGAGAAGGAGAATAATATGTTGAGAGAGGAGATGCACCGGAGATTTGAG
AATGCCCCTGACTCTGCCAAGACAAAAGCCCTGCAAACCGTTATTGAAATGAAGGATTCAAAAA
TTTCTTCCATGGAGCGTGGGCTCCGAGACCTGGAAGAGGAAATTCAGATGCTGAAATCAAACGG
GGCTTTGAGCACAGAAGAGCGGGAGGAGGAGATGAAGCAAATGGAGGTGTACAGGAGCCACTCT
AAGTTCATGAAAAATAAGGTAGAGCAACTGAAGGAGGAGCTAAGTTCCAAAGATGCTCAAGGGG
AGGAGCTGAAAAAGAGAGCGGCTGGTCTTCAGTCTGAGATTGGCCAGGTGAAACAGGAATTGTC
CAGAAAGGACACAGAATTACTAGCCTTACAGACAAAGCTAGAAACTCTGACGAACCAATTCTCA
GACAGCAAGCAGCATATTGAGGTGCTGAAAGAGTCCCTCACTGCTAAGGAACAAAGGGCCGCCA
TCCTGCAGACTGAGGTGGATGCTCTTCGATTGCGTTTGGAAGAAAAGGAGACGATGCTGAATAA
AAAAACCAAACAAATCCAAGATATGGCTGAGGAGAAGGGCACACAAGCTGGAGAGATACACGAC
CTCAAGGACATGCTGGACGTGAAGGAGCGGAAGGTCAATGTTCTGCAGAAGAAGATAGAAAATC
TTCAGGAGCAGCTAAGAGATAAGGAGAAGCAGATGAGCAGCCTGAAAGAGCGAGTCAAGTCTCT
GCAGGCAGACACCACCAACACCGACACAGCTCTGACGACGCTGGAGGAGGCCCTTGCAGATAAA
GAACGAACAATTGAACGCTTAAAGGAACAACGGGACAGAGATGAGCGAGAGAAGCAAGAGGAGA
TTGATACCTACAAAAAAGATCTTAAAGACTTGAAAGAAAAAGTCAGCCTATTGCAAGGAGACCT
CTCAGAGAAGGAGGCTTCTCTTTTGGATCTCAAAGAGCATGCTTCTTCCCTGGCTTCCTCAGGA
CTGAAAAAGGACTCACGGCTCAAGACCCTAGAGATCGCTCTTGAGCAGAAGAAGGAAGAGTGCC
TAAAAATGGAATCACAGTTGAAAAAGGCACATGAAGCAACACTGGAAGCCAGAGCCAGCCCAGA
GATGAGTGACCGAATACAGCAATTGGAGAGAGAGATGGCCAGGTACAAAGATGAATCCAGCAAG
GCCCAAACAGAAGTTGACCGTCTCTTGGAAATCTTGAAAGAGGTGGAAAATGAGAAGAATGACA
AAGATAAGAAGATAGCTGAGTTGGAAAGGCAGGTGAAAGACCAGAATAAGAAGGTAGCGAATCT
GAAGCACAAGGAGCAGGTGGAGAAGAAGAAAAGTGCGCAGATGCTGGAGGAGGCCCGGAGGAGG
GAGGACAGTCTCAGCGACAGCTCTCAGCAGCTGCAGGACAGTCTCCGTAAGAAGGATGACAGGA
TTGAAGAGCTGGAAGAAGCACTGAGAGAAAGTGTACAGATAACTGCAGAGCGGGAAATGGTGCT
GGCACAAGAGGAATCAGCCAGGACCAATGCTGAGAAACAGGTGGAAGAGCTGTTGATGGCTATG
GAGAAGGTGAAGCAAGAGCTGGAGTCCATGAAAGCTAAGCTGTCCTCCACCCAGCAGTCTCTGG
CAGAGAAGGAGACACATCTAACCAACCTCCGGGCAGAGAGAAGGAAACACTTAGAGGAGGTTCT
GGAGATGAAACAAGAAGCTCTTCTGGCTGCCATTAGCGAAAAGGACGCTAACATAGCCCTCCTG
GAGCTCTCCTCCTCGAAGAAAAAGACCCAAGAAGAAGTGGCCGCACTGAAACGGGAAAAGGACC
GCCTGGTGCAGCAGCTCAAACAGCAGACACAAAATCGAATGAAACTAATGGCTGACAACTATGA
AGATGACCACTTCAGATCCTCCCGTTCCAATCAGACGAACCATAAACCCTCCCCAGACCAGATC
ATCCAGCCCCTTTTAGAACTTGACCAAAATAGAAGCAAGTTAAAGTTGTATATTGGACACCTGA
CAGCCCTCTGCCATGACCGAGACCCCTTAATCCTCCGTGGACTCACTCCACCAGCTTCCTATAA
TGCAGATGGTGAACAGGCAGCTTGGGAGAATGAGCTGCAGAAGATGACTCAGGAGCAGCTTCAG
AACGAGTTAGAGAAAGTTGAAGGGGACAATGCAGAGCTGCAGGAGTTCGCCAACACCATTCTCC
AGCAGATAGCTGATCACTGCCCTGACATCCTCGAACAAGTTGTCAATGCCCTGGAAGAGTCCTC
CTGACATGCTCCAAGAAAGGTGACCAAGGAGCCAGAGAGGAGAACCTGAGGAACGGGTGTCTGG
GCCGCCCCATCCTAGACCCTGCCAGCTGGGCGTGCCAGTCCAGCCATCTGTGTCTGTCTCTGCC
TTCCGCTTTGAATGCTGCCTGCACACGTCTCCTGGTCTCCATGAAAAACTGCCCTTGGCGTCAG
CAGTGGAGGGCTGGGGGTGCACTCCGCCCTTCCAGAAACAGGAAGCAGAAGCCCACTCAGGTTC
TGTGCTTTGAAAGCTTGGAGCTGAAGCATTAGCATGAGTGCTTTCTCCTCGGAGGGTAGAGAAG
GAGGAAGGGTGACCAGGGACGAGAAGAGCGAGTGCTCCTCTCTGTGTCAAGCTGCCTCGTGTTT
ACCATGTTTACCGTCATGAACCCCAGGTACAGGCTGGCTTCATGCAGCTTAGCTCTTGGCCTGT
TGCCTCTCTCACCTGCACTGCTTTTAGCTGACAGGAGGAAGATGTTCACAGTGGTCACCCATCT
CACGCTTCTTTAAGGCCTTTGACCTTCCCATGCTGCACGGTTAGGTTAATGTCTGACTGAAGAG
AAGAGGACTTAATGTACAGGGCCTGTTGTCACTGCTTGCAGTTTTGCTCCTCAGAAGATGTCCC
GGAGGGCCAGTCTGATTCCTCCTGAACATTATCCACAATGCTCTCTGCTCCCCAAGCTGCTGTA
GAACAGGGGTTGCTGGTGTCTGTGACCCATCCTGCCTTCTCAGCTTTACTCTTAAGGAACATTC
TCAGAGCCACAGCCTCATAGCCTGCCTAGCAACTGAGTTTGTCTTAATTCACACCCATTCCCTC
CTCCATTCATTCATTCAAAAATGTTATGAAATGCCCACTGTATACACATCAGTGTGCACGGTGC
CCATCCTTGGAAAAGGCTCAAATAGGGATGGTGTGGAAGTCCGTGAGACATGCTCAGTTGAATC
ATGGCAGTGAACTCATACCTTCTCCCCTCTTCCCAGAAACATCTTCAGACCAGCATTCTTTGTT
CTCCACTCTCATGGCATCTGTGGGCTTGGGTGAGCCACGTCTTTGCTGGGAAGATCCCATTTGG
CAGGTCAGGATTTTTGCTGTCAGTGTTATTGCCCTGAAACATGTTCTGTTTAAGGAACTGTACA
TGCTCATTTGCGTCAGCTGACTGCTTAACACACCCATGCGCGCTTCGTGGACATAGCCAGCACT
GTGCTGAGCTCAGGCAGAGCCAGTTGAATGTCTCGGCATTTTGCAGACTTTCCCCCAGGTGTAG
AGGACAGCTACCAGACATAGTCAAGCTCTACAAGAGTGCAGCTCATGTCCAGTTCTTCATCCCT
GAAGCAGACGCCTGACGCTGCTGCCTTCTGAGGAGGCTGCTAAGGCCTGCTTTCTCCCTCTGCC
CAGTTACACTCAAAGGAATTTAACACTGCCCACAAATCTCTCACCGCCTTCAACCCAGGACATC
ATGCAGCCACTATTGTCACAGTCACAGCGCTGGCTCCCCTTCTCTGCCACACAGTGTTCCTTTG
TGGGTGCTGAGAGAGTTCCCGTGAGGGTTCGGTGGACTCTGCCATGGACCTCTCACAGAGGTGC
TTTTGGAGGTCCCAGCCTGGCCACCGGGAATATGGAAATTAGGCCAAAATATGATAGTCCTTGC
TGCTCATTTCTCAATGTTTTTATTGTCCCGTCCGTAAATCCTGTAGAAGACCCCCCTGTATTGT
AGGATAGGAAGGTTAGAATCTTATTTAATTCTCATAACATAAGGAACCATTACCTAGTAACTGC
TTCACAGGCTACAGTGGAATCCAGAAAGCTTAGAAGAGTCCAGGCCCACAGAAGTAGCCTAGCC
CACCCCCGCCAGCTGCTGCTCCAGCTGTTCTCTGAGGGACACCATAGGCACGACTCCTTATACG
TACCTATCTGGTACTTAGTAGAAGTACCACTTGCCACCCTTCCTAACTGGACACATGACCCAGT
CCACCACATCCTGCTCCATCGTCCCTCCAGAGAGGCTGCAGGAACCCTGCAGGACACGCTTGTT
GAGAAGGCAAGTTTCTAAGGCAAACCTTGTCTGATTGCTGCACCACAGCAAAGGATTCTCCTCC
TCAGGTGGTGATCCAGCAACTCAAATGGCTCTGGAGACTGTGGAGCTAAAGTTGAACGTAAATG
TAGTCTTCGTGTTGGGCAAAGTCCTAGGGTATCTGGCATTCAGATCCTACTGACTACATTCATG
AAGCCAATGTTTCCTAAATGCTTAACTGCCACTGCACTGGGACACGCCATTCCATGACTGTCTT
CACGCACGCATGTTCCTTCCAGTAGCTGCCCTCAAGAGCTCACTGCATGTTGGCTAGGATCATC
CCTCACTTCATTCCATCGTCAAGCCTCATAGCTTTTGCACCTAGAGTGAAGGTGGCCTCCCTCC
AGGCCTTTGGAGAAGGGTTAAAGCAAGCATGTGTCACTATATAGGATGTGATACCCACAGACCC
AAGTACCAGCAGACCCTGTGTCAGCAGTGTCTACCCCAAGTGACATCATCAAGATGACAGTAGG
AAACGAGGCTGGAAGCCAACCTTGGGCTGCTGGCTCTGCATACCTTAGTAGACTCTGTCCCTGG
CCCTTGATGAGTGACTGATGGCACATCTGATTGGGATTAGCAAGTATTAAAGACATTTAAGATG
AGAAGTCAGAGTGGGCTTTAGCAACTCGGAAATGTGAAGGGGTCCGTGGTCCCTGCCGGCCTTT
ATGCTCACGCTTGAGAAGGCCCGAGTGTACCTCCTCACCAGCGGGCTTTAGAAGCCCTGGGAGA
GCAGACTGGAATGAGACCACCAGCGGTGTAGCAGGTCGAGATGTGGCTGGCTGTGTCCTGTCCA
TCTGTTTGGCCTCCTGGGAAGAAAGCGTTGGCTCAATTTCTTTCTCAGGAGAGATGAAGTCAGC
ACAGATGGTTCTCACGTGCTACTGTCCTGCCCTCCACTGTTGACACTGGGACTGGCTTGGCATC
ACACCCTCCTGTTTGTGAAGCACAGACTCACTGGCCTCCCTCCAGGTCCTTGAAGAAGGGTCAG
AGCAAGGATATGTTGCTCCACAGGATGTGACACCCACAGGCCTAAGTCCCAGCAGACCCTGTGT
CAGCAGTCGGTCACTCAAGTCTGCCTCACCTCCTGCCTGAAGAGGCCAGAGCCATGGAAAAGGA
GAAAGAAGGATAAGGCTGTACCACAGGCCTGTCGGGCACCCACTGTCACTGCCAGTCTCAGAGA
TTTTGTTTAAAGATTTGTTCTTTCCTGTGAACCAAGAGAACGTTCAGGGAAAAAGAATATATGC
TTCACCTGGGGATCCTTCCGAACAAAATGGCTGTCTGAACTCTTTTTAAACAGAAACTTTCCAA
ACTTTTTAGTGTCAAAATTGTAACCAAGTGTCTCCTGATTCTTCCCAATGTGTTTGGCAAGTGC
TGTGACCCTGTTGTAGGTATTTCTCCTCCTGCCTCTTCTGAGGGAGAAGTGACTTTAGGGGTTG
ACTTGAGGGAGCAGGTATCTGTCCCGTCCTGCCACCTCTCTTGTATCTCTGCTTGTTGATATTG
TCTGTGTGATTCAGAGAACGGGGCAGTTACATTGTGTCCATTGTTGAGAATATTAAAATATTAA
AAAAGTAGTTATAGAACTAAAAAATTAAAGAGCTGTGTTTTAAAAGATGCAAACCCATAAATAT
GTTAACAAAGGGATTCAAGCTATGGGCAGCCTAGCTCCTCCCCCTCCAGGTTGGTGCGGTGGTA
GCCAGGCCAGCCCTTGGGAGACACACTGACCACACCTGAGTTAGGTGACTGCCTGGGAACAGGA
CACCTGCCCAGTGGTGCAGTGAGAATCTGGGGCTCGCTCAGAGACTCTCCGTTGTGTCAGGGTT
TTCTCTACATCCTCAGGACCTCTGGGTAGAGGCGTTAAAGTTGGTGACCCCAGAACCACCCTCA
CCCTCACATTGGATCAAGCCTCGTGTGCCTAGTGCTATGTTGTAACCTGGGCTTGAGCCTGGAG
CTCCTGCTTGCAAGGCCACAGGACCTCTTCCTGCCCACTTGGTGCTATCTCATCATAACCATCT
AACAGGGCAGCCTGGTCTCCTGGAGCCTGGGGGCCAGGGGCCGTGGGTGGCCCTCGGAGCTCAG
CTCTCTCTGGCTCCTGATCTTAGATTTTTCCTTTTGAAGCTTTTTAGACCCAAACTCCCTTGGC
TTCAGAGATGTCCGAGTCAGGGAGGGAAGTGAGCCAGGCTGAGGTGAGGAGATCCACCACTCTG
CCACAGTAAGCACACTAGTCCAGCCCCTCTTCCCTGCCACACCAGTATTACATCCATCCTTTAA
AGATCTAGTCCCACCTGAGGCACACGTCATCCCTCGGCCCAGCTGCCCCCAGTGCAGACTAGAA
ACCCGGGATGGACACACTGACGTTTCTTTGCACCCCTACTTTAGAAGAGGCATGTTGCACTTTA
GTGGGGAGCCCAGAACACTGGGCACTGGCTTCCTATAGCTTGAGTCCCTGTAGATAGCAGTGAT
GGCAGCCTGGTGGTTTGTGTGAAGCAGCTGCAACTGCTGTCTTCAACTGCACACATGTGCAGTT
CTAGAGTCAAATTCTGGCCTGGTGATGACATTACAAAGACGCGATCGGTTCAACTTTGCCTTGG
TAATTATTGTAAACACTTTGTTCAACTTTTTTCTTTTTTATTCACAAACTAAATCCATCAGGAA
ATTATAAACTTATTTAAAAACTG

hide sequence

RefSeq Acc Id:

XM_006237226 ⟹ XP_006237288

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	152,763,664 - 153,055,704 (-)	NCBI
Rnor_6.0	4	152,087,393 - 152,380,021 (-)	NCBI
Rnor_5.0	4	219,174,705 - 219,465,108 (-)	NCBI

Sequence:

show sequence

CATTTGTCGTTTCCGACCGGGCTCTGCGCTCCCGGCCCTGGCTGGGCAGGGCAGAGTGCCCCTG
GGGAGGGGCGGAGCCGTAGATATGGCATAAGATATTTCTTCAAGATTGGACAGCTGGTGACCTG
CTATTTCTGACAGCCTTAAGCTGACTTTATAGCCATAGAGAAACCTCACGGACTTGTATTGTTG
TTTTCTACTCATACCATTTCTGGCACCTAAGTTCACCCTGCAACCATGTATGGAAGTGCTCGGT
CAGTGGGGAAAGTGGAACCAAGCAGCCAGAGTCCTGGGCGATCACCTCGGCTTCCTCGGTCCCC
TCGCTTAGGTCATCGGCGAACAAATAGCACAGGAGGGAGTTCTGGAAACAGTGTTGGAGGTGGC
AGTGGGAAAACCCTTTCAATGGAGAATATACAGTCCTTAAATGCTGCCTATGCTACATCTGGCC
CTATGTACCTAAGTGACCATGAAAACGTGGGTGCAGAAACACCTAAAAGCACCATGACACTTGG
CCGTTCTGGAGGACGCCTGCCTTACGGGGTTAGGATGACTGCTATGGGCAGCAGCCCCAACATA
GCAAGCAGTGGGGTTGCTAGTGATACCATAGCGTTTGGAGAGCATCACCTCCCTCCTGTTAGTA
TGGCGTCCACGGTACCTCACTCTCTTCGTCAAGCAAGAGATAACACCATCATGGATCTGCAGAC
GCAGCTGAAGGAAGTATTAAGAGAAAACGATCTTTTGAGGAAAGATGTGGAAGTAAAGGAGAGC
AAATTAAGTTCTTCGATGAATAGCATCAAGACCTTCTGGAGTCCAGAGCTGAAGAAAGAGCGGG
CCTTGAGAAAAGACGAAGCTTCCAAAATCACCATTTGGAAGGAGCAGTACCGAGTTGTGCAGGA
GGAAAACCAGCACATGCAGATGACAATCCAGGCTCTCCAGGATGAGCTGCGCATTCAGAGGGAC
TTGAATCAGCTGTTTCAGCAAGATAGCAGCAGTCGGACTGGGGAGCCTTGTGTGGCAGAGCTCA
CGGAGGAGAACTTCCAGAGGCTGCATGCTGAGCACGAGAGGCAAGCCAAGGAGCTGTTTCTCCT
GCGGAAGACCCTGGAGGAAATGGAGCTGAGGATTGAGACTCAGAAGCAAACCCTCAATGCTCGG
GATGAGTCCATTAAGAAGCTTCTGGAGATGCTACAGAGCAAAGGACTTTCTGCCAAAGCCACAG
AGGAAGACCATGAGAGAACGAGACGGCTGGCGGAGGCAGAGATGCACGTCCACCACCTAGAGAG
TCTTTTGGAGCAGAAGGAGAAGGAGAATAATATGTTGAGAGAGGAGATGCACCGGAGATTTGAG
AATGCCCCTGACTCTGCCAAGACAAAAGCCCTGCAAACCGTTATTGAAATGAAGGATTCAAAAA
TTTCTTCCATGGAGCGTGGGCTCCGAGACCTGGAAGAGGAAATTCAGATGCTGAAATCAAACGG
GGCTTTGAGCACAGAAGAGCGGGAGGAGGAGATGAAGCAAATGGAGGTGTACAGGAGCCACTCT
AAGTTCATGAAAAATAAGATTGGCCAGGTGAAACAGGAATTGTCCAGAAAGGACACAGAATTAC
TAGCCTTACAGACAAAGCTAGAAACTCTGACGAACCAATTCTCAGACAGCAAGCAGCATATTGA
GGTGCTGAAAGAGTCCCTCACTGCTAAGGAACAAAGGGCCGCCATCCTGCAGACTGAGGTGGAT
GCTCTTCGATTGCGTTTGGAAGAAAAGGAGACGATGCTGAATAAAAAAACCAAACAAATCCAAG
ATATGGCTGAGGAGAAGGGCACACAAGCTGGAGAGATACACGACCTCAAGGACATGCTGGACGT
GAAGGAGCGGAAGGTCAATGTTCTGCAGAAGAAGATAGAAAATCTTCAGGAGCAGCTAAGAGAT
AAGGAGAAGCAGATGAGCAGCCTGAAAGAGCGAGTCAAGTCTCTGCAGGCAGACACCACCAACA
CCGACACAGCTCTGACGACGCTGGAGGAGGCCCTTGCAGATAAAGAACGAACAATTGAACGCTT
AAAGGAACAACGGGACAGAGATGAGCGAGAGAAGCAAGAGGAGATTGATACCTACAAAAAAGAT
CTTAAAGACTTGAAAGAAAAAGTCAGCCTATTGCAAGGAGACCTCTCAGAGAAGGAGGCTTCTC
TTTTGGATCTCAAAGAGCATGCTTCTTCCCTGGCTTCCTCAGGACTGAAAAAGGACTCACGGCT
CAAGACCCTAGAGATCGCTCTTGAGCAGAAGAAGGAAGAGTGCCTAAAAATGGAATCACAGTTG
AAAAAGGCACATGAAGCAACACTGGAAGCCAGAGCCAGCCCAGAGATGAGTGACCGAATACAGC
AATTGGAGAGAGAGATGGCCAGGTACAAAGATGAATCCAGCAAGGCCCAAACAGAAGTTGACCG
TCTCTTGGAAATCTTGAAAGAGGTGGAAAATGAGAAGAATGACAAAGATAAGAAGATAGCTGAG
TTGGAAAGTCTCACCTCAAGGCAGGTGAAAGACCAGAATAAGAAGGTAGCGAATCTGAAGCACA
AGGAGCAGGTGGAGAAGAAGAAAAGTGCGCAGATGCTGGAGGAGGCCCGGAGGAGGGAGGACAG
TCTCAGCGACAGCTCTCAGCAGCTGCAGGACAGTCTCCGTAAGAAGGATGACAGGATTGAAGAG
CTGGAAGAAGCACTGAGAGAAAGTGTACAGATAACTGCAGAGCGGGAAATGGTGCTGGCACAAG
AGGAATCAGCCAGGACCAATGCTGAGAAACAGGTGGAAGAGCTGTTGATGGCTATGGAGAAGGT
GAAGCAAGAGCTGGAGTCCATGAAAGCTAAGCTGTCCTCCACCCAGCAGTCTCTGGCAGAGAAG
GAGACACATCTAACCAACCTCCGGGCAGAGAGAAGGAAACACTTAGAGGAGGTTCTGGAGATGA
AACAAGAAGCTCTTCTGGCTGCCATTAGCGAAAAGGACGCTAACATAGCCCTCCTGGAGCTCTC
CTCCTCGAAGAAAAAGACCCAAGAAGAAGTGGCCGCACTGAAACGGGAAAAGGACCGCCTGGTG
CAGCAGCTCAAACAGCAGACACAAAATCGAATGAAACTAATGGCTGACAACTATGAAGATGACC
ACTTCAGATCCTCCCGTTCCAATCAGACGAACCATAAACCCTCCCCAGACCAGATCATCCAGCC
CCTTTTAGAACTTGACCAAAATAGAAGCAAGTTAAAGTTGTATATTGGACACCTGACAGCCCTC
TGCCATGACCGAGACCCCTTAATCCTCCGTGGACTCACTCCACCAGCTTCCTATAATGCAGATG
GTGAACAGGCAGCTTGGGAGAATGAGCTGCAGAAGATGACTCAGGAGCAGCTTCAGAACGAGTT
AGAGAAAGTTGAAGGGGACAATGCAGAGCTGCAGGAGTTCGCCAACACCATTCTCCAGCAGATA
GCTGATCACTGCCCTGACATCCTCGAACAAGTTGTCAATGCCCTGGAAGAGTCCTCCTGACATG
CTCCAAGAAAGGTGACCAAGGAGCCAGAGAGGAGAACCTGAGGAACGGGTGTCTGGGCCGCCCC
ATCCTAGACCCTGCCAGCTGGGCGTGCCAGTCCAGCCATCTGTGTCTGTCTCTGCCTTCCGCTT
TGAATGCTGCCTGCACACGTCTCCTGGTCTCCATGAAAAACTGCCCTTGGCGTCAGCAGTGGAG
GGCTGGGGGTGCACTCCGCCCTTCCAGAAACAGGAAGCAGAAGCCCACTCAGGTTCTGTGCTTT
GAAAGCTTGGAGCTGAAGCATTAGCATGAGTGCTTTCTCCTCGGAGGGTAGAGAAGGAGGAAGG
GTGACCAGGGACGAGAAGAGCGAGTGCTCCTCTCTGTGTCAAGCTGCCTCGTGTTTACCATGTT
TACCGTCATGAACCCCAGGTACAGGCTGGCTTCATGCAGCTTAGCTCTTGGCCTGTTGCCTCTC
TCACCTGCACTGCTTTTAGCTGACAGGAGGAAGATGTTCACAGTGGTCACCCATCTCACGCTTC
TTTAAGGCCTTTGACCTTCCCATGCTGCACGGTTAGGTTAATGTCTGACTGAAGAGAAGAGGAC
TTAATGTACAGGGCCTGTTGTCACTGCTTGCAGTTTTGCTCCTCAGAAGATGTCCCGGAGGGCC
AGTCTGATTCCTCCTGAACATTATCCACAATGCTCTCTGCTCCCCAAGCTGCTGTAGAACAGGG
GTTGCTGGTGTCTGTGACCCATCCTGCCTTCTCAGCTTTACTCTTAAGGAACATTCTCAGAGCC
ACAGCCTCATAGCCTGCCTAGCAACTGAGTTTGTCTTAATTCACACCCATTCCCTCCTCCATTC
ATTCATTCAAAAATGTTATGAAATGCCCACTGTATACACATCAGTGTGCACGGTGCCCATCCTT
GGAAAAGGCTCAAATAGGGATGGTGTGGAAGTCCGTGAGACATGCTCAGTTGAATCATGGCAGT
GAACTCATACCTTCTCCCCTCTTCCCAGAAACATCTTCAGACCAGCATTCTTTGTTCTCCACTC
TCATGGCATCTGTGGGCTTGGGTGAGCCACGTCTTTGCTGGGAAGATCCCATTTGGCAGGTCAG
GATTTTTGCTGTCAGTGTTATTGCCCTGAAACATGTTCTGTTTAAGGAACTGTACATGCTCATT
TGCGTCAGCTGACTGCTTAACACACCCATGCGCGCTTCGTGGACATAGCCAGCACTGTGCTGAG
CTCAGGCAGAGCCAGTTGAATGTCTCGGCATTTTGCAGACTTTCCCCCAGGTGTAGAGGACAGC
TACCAGACATAGTCAAGCTCTACAAGAGTGCAGCTCATGTCCAGTTCTTCATCCCTGAAGCAGA
CGCCTGACGCTGCTGCCTTCTGAGGAGGCTGCTAAGGCCTGCTTTCTCCCTCTGCCCAGTTACA
CTCAAAGGAATTTAACACTGCCCACAAATCTCTCACCGCCTTCAACCCAGGACATCATGCAGCC
ACTATTGTCACAGTCACAGCGCTGGCTCCCCTTCTCTGCCACACAGTGTTCCTTTGTGGGTGCT
GAGAGAGTTCCCGTGAGGGTTCGGTGGACTCTGCCATGGACCTCTCACAGAGGTGCTTTTGGAG
GTCCCAGCCTGGCCACCGGGAATATGGAAATTAGGCCAAAATATGATAGTCCTTGCTGCTCATT
TCTCAATGTTTTTATTGTCCCGTCCGTAAATCCTGTAGAAGACCCCCCTGTATTGTAGGATAGG
AAGGTTAGAATCTTATTTAATTCTCATAACATAAGGAACCATTACCTAGTAACTGCTTCACAGG
CTACAGTGGAATCCAGAAAGCTTAGAAGAGTCCAGGCCCACAGAAGTAGCCTAGCCCACCCCCG
CCAGCTGCTGCTCCAGCTGTTCTCTGAGGGACACCATAGGCACGACTCCTTATACGTACCTATC
TGGTACTTAGTAGAAGTACCACTTGCCACCCTTCCTAACTGGACACATGACCCAGTCCACCACA
TCCTGCTCCATCGTCCCTCCAGAGAGGCTGCAGGAACCCTGCAGGACACGCTTGTTGAGAAGGC
AAGTTTCTAAGGCAAACCTTGTCTGATTGCTGCACCACAGCAAAGGATTCTCCTCCTCAGGTGG
TGATCCAGCAACTCAAATGGCTCTGGAGACTGTGGAGCTAAAGTTGAACGTAAATGTAGTCTTC
GTGTTGGGCAAAGTCCTAGGGTATCTGGCATTCAGATCCTACTGACTACATTCATGAAGCCAAT
GTTTCCTAAATGCTTAACTGCCACTGCACTGGGACACGCCATTCCATGACTGTCTTCACGCACG
CATGTTCCTTCCAGTAGCTGCCCTCAAGAGCTCACTGCATGTTGGCTAGGATCATCCCTCACTT
CATTCCATCGTCAAGCCTCATAGCTTTTGCACCTAGAGTGAAGGTGGCCTCCCTCCAGGCCTTT
GGAGAAGGGTTAAAGCAAGCATGTGTCACTATATAGGATGTGATACCCACAGACCCAAGTACCA
GCAGACCCTGTGTCAGCAGTGTCTACCCCAAGTGACATCATCAAGATGACAGTAGGAAACGAGG
CTGGAAGCCAACCTTGGGCTGCTGGCTCTGCATACCTTAGTAGACTCTGTCCCTGGCCCTTGAT
GAGTGACTGATGGCACATCTGATTGGGATTAGCAAGTATTAAAGACATTTAAGATGAGAAGTCA
GAGTGGGCTTTAGCAACTCGGAAATGTGAAGGGGTCCGTGGTCCCTGCCGGCCTTTATGCTCAC
GCTTGAGAAGGCCCGAGTGTACCTCCTCACCAGCGGGCTTTAGAAGCCCTGGGAGAGCAGACTG
GAATGAGACCACCAGCGGTGTAGCAGGTCGAGATGTGGCTGGCTGTGTCCTGTCCATCTGTTTG
GCCTCCTGGGAAGAAAGCGTTGGCTCAATTTCTTTCTCAGGAGAGATGAAGTCAGCACAGATGG
TTCTCACGTGCTACTGTCCTGCCCTCCACTGTTGACACTGGGACTGGCTTGGCATCACACCCTC
CTGTTTGTGAAGCACAGACTCACTGGCCTCCCTCCAGGTCCTTGAAGAAGGGTCAGAGCAAGGA
TATGTTGCTCCACAGGATGTGACACCCACAGGCCTAAGTCCCAGCAGACCCTGTGTCAGCAGTC
GGTCACTCAAGTCTGCCTCACCTCCTGCCTGAAGAGGCCAGAGCCATGGAAAAGGAGAAAGAAG
GATAAGGCTGTACCACAGGCCTGTCGGGCACCCACTGTCACTGCCAGTCTCAGAGATTTTGTTT
AAAGATTTGTTCTTTCCTGTGAACCAAGAGAACGTTCAGGGAAAAAGAATATATGCTTCACCTG
GGGATCCTTCCGAACAAAATGGCTGTCTGAACTCTTTTTAAACAGAAACTTTCCAAACTTTTTA
GTGTCAAAATTGTAACCAAGTGTCTCCTGATTCTTCCCAATGTGTTTGGCAAGTGCTGTGACCC
TGTTGTAGGTATTTCTCCTCCTGCCTCTTCTGAGGGAGAAGTGACTTTAGGGGTTGACTTGAGG
GAGCAGGTATCTGTCCCGTCCTGCCACCTCTCTTGTATCTCTGCTTGTTGATATTGTCTGTGTG
ATTCAGAGAACGGGGCAGTTACATTGTGTCCATTGTTGAGAATATTAAAATATTAAAAAAGTAG
TTATAGAACTAAAAAATTAAAGAGCTGTGTTTTAAAAGATGCAAACCCATAAATATGTTAACAA
AGGGATTCAAGCTATGGGCAGCCTAGCTCCTCCCCCTCCAGGTTGGTGCGGTGGTAGCCAGGCC
AGCCCTTGGGAGACACACTGACCACACCTGAGTTAGGTGACTGCCTGGGAACAGGACACCTGCC
CAGTGGTGCAGTGAGAATCTGGGGCTCGCTCAGAGACTCTCCGTTGTGTCAGGGTTTTCTCTAC
ATCCTCAGGACCTCTGGGTAGAGGCGTTAAAGTTGGTGACCCCAGAACCACCCTCACCCTCACA
TTGGATCAAGCCTCGTGTGCCTAGTGCTATGTTGTAACCTGGGCTTGAGCCTGGAGCTCCTGCT
TGCAAGGCCACAGGACCTCTTCCTGCCCACTTGGTGCTATCTCATCATAACCATCTAACAGGGC
AGCCTGGTCTCCTGGAGCCTGGGGGCCAGGGGCCGTGGGTGGCCCTCGGAGCTCAGCTCTCTCT
GGCTCCTGATCTTAGATTTTTCCTTTTGAAGCTTTTTAGACCCAAACTCCCTTGGCTTCAGAGA
TGTCCGAGTCAGGGAGGGAAGTGAGCCAGGCTGAGGTGAGGAGATCCACCACTCTGCCACAGTA
AGCACACTAGTCCAGCCCCTCTTCCCTGCCACACCAGTATTACATCCATCCTTTAAAGATCTAG
TCCCACCTGAGGCACACGTCATCCCTCGGCCCAGCTGCCCCCAGTGCAGACTAGAAACCCGGGA
TGGACACACTGACGTTTCTTTGCACCCCTACTTTAGAAGAGGCATGTTGCACTTTAGTGGGGAG
CCCAGAACACTGGGCACTGGCTTCCTATAGCTTGAGTCCCTGTAGATAGCAGTGATGGCAGCCT
GGTGGTTTGTGTGAAGCAGCTGCAACTGCTGTCTTCAACTGCACACATGTGCAGTTCTAGAGTC
AAATTCTGGCCTGGTGATGACATTACAAAGACGCGATCGGTTCAACTTTGCCTTGGTAATTATT
GTAAACACTTTGTTCAACTTTTTTCTTTTTTATTCACAAACTAAATCCATCAGGAAATTATAAA
CTTATTTAAAAACTG

hide sequence

RefSeq Acc Id:

XM_006237227 ⟹ XP_006237289

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	152,763,664 - 153,055,704 (-)	NCBI
Rnor_6.0	4	152,087,393 - 152,380,021 (-)	NCBI
Rnor_5.0	4	219,174,705 - 219,465,108 (-)	NCBI

Sequence:

show sequence

CATTTGTCGTTTCCGACCGGGCTCTGCGCTCCCGGCCCTGGCTGGGCAGGGCAGAGTGCCCCTG
GGGAGGGGCGGAGCCGTAGATATGGCATAAGATATTTCTTCAAGATTGGACAGCTGGTGACCTG
CTATTTCTGACAGCCTTAAGCTGACTTTATAGCCATAGAGAAACCTCACGGACTTGTATTGTTG
TTTTCTACTCATACCATTTCTGGCACCTAAGTTCACCCTGCAACCATGTATGGAAGTGCTCGGT
CAGTGGGGAAAGTGGAACCAAGCAGCCAGAGTCCTGGGCGATCACCTCGGCTTCCTCGGTCCCC
TCGCTTAGGTCATCGGCGAACAAATAGCACAGGAGGGAGTTCTGGAAACAGTGTTGGAGGTGGC
AGTGGGAAAACCCTTTCAATGGAGAATATACAGTCCTTAAATGCTGCCTATGCTACATCTGGCC
CTATGTACCTAAGTGACCATGAAAACGTGGGTGCAGAAACACCTAAAAGCACCATGACACTTGG
CCGTTCTGGAGGACGCCTGCCTTACGGGGTTAGGATGACTGCTATGGGCAGCAGCCCCAACATA
GCAAGCAGTGGGGTTGCTAGTGATACCATAGCGTTTGGAGAGCATCACCTCCCTCCTGTTAGTA
TGGCGTCCACGGTACCTCACTCTCTTCGTCAAGCAAGAGATAACACCATCATGGATCTGCAGAC
GCAGCTGAAGGAAGTATTAAGAGAAAACGATCTTTTGAGGAAAGATGTGGAAGTAAAGGAGAGC
AAATTAAGTTCTTCGATGAATAGCATCAAGACCTTCTGGAGTCCAGAGCTGAAGAAAGAGCGGG
CCTTGAGAAAAGACGAAGCTTCCAAAATCACCATTTGGAAGGAGCAGTACCGAGTTGTGCAGGA
GGAAAACCAGCACATGCAGATGACAATCCAGGCTCTCCAGGATGAGCTGCGCATTCAGAGGGAC
TTGAATCAGCTGTTTCAGCAAGATAGCAGCAGTCGGACTGGGGAGCCTTGTGTGGCAGAGCTCA
CGGAGGAGAACTTCCAGAGGCTGCATGCTGAGCACGAGAGGCAAGCCAAGGAGCTGTTTCTCCT
GCGGAAGACCCTGGAGGAAATGGAGCTGAGGATTGAGACTCAGAAGCAAACCCTCAATGCTCGG
GATGAGTCCATTAAGAAGCTTCTGGAGATGCTACAGAGCAAAGGACTTTCTGCCAAAGCCACAG
AGGAAGACCATGAGAGAACGAGACGGCTGGCGGAGGCAGAGATGCACGTCCACCACCTAGAGAG
TCTTTTGGAGCAGAAGGAGAAGGAGAATAATATGTTGAGAGAGGAGATGCACCGGAGATTTGAG
AATGCCCCTGACTCTGCCAAGACAAAAGCCCTGCAAACCGTTATTGAAATGAAGGATTCAAAAA
TTTCTTCCATGGAGCGTGGGCTCCGAGACCTGGAAGAGGAAATTCAGATGCTGAAATCAAACGG
GGCTTTGAGCACAGAAGAGCGGGAGGAGGAGATGAAGCAAATGGAGGTGTACAGGAGCCACTCT
AAGTTCATGAAAAATAAGATTGGCCAGGTGAAACAGGAATTGTCCAGAAAGGACACAGAATTAC
TAGCCTTACAGACAAAGCTAGAAACTCTGACGAACCAATTCTCAGACAGCAAGCAGCATATTGA
GGTGCTGAAAGAGTCCCTCACTGCTAAGGAACAAAGGGCCGCCATCCTGCAGACTGAGGTGGAT
GCTCTTCGATTGCGTTTGGAAGAAAAGGAGACGATGCTGAATAAAAAAACCAAACAAATCCAAG
ATATGGCTGAGGAGAAGGGCACACAAGCTGGAGAGATACACGACCTCAAGGACATGCTGGACGT
GAAGGAGCGGAAGGTCAATGTTCTGCAGAAGAAGATAGAAAATCTTCAGGAGCAGCTAAGAGAT
AAGGAGAAGCAGATGAGCAGCCTGAAAGAGCGAGTCAAGTCTCTGCAGGCAGACACCACCAACA
CCGACACAGCTCTGACGACGCTGGAGGAGGCCCTTGCAGATAAAGAACGAACAATTGAACGCTT
AAAGGAACAACGGGACAGAGATGAGCGAGAGAAGCAAGAGGAGATTGATACCTACAAAAAAGAT
CTTAAAGACTTGAAAGAAAAAGTCAGCCTATTGCAAGGAGACCTCTCAGAGAAGGAGGCTTCTC
TTTTGGATCTCAAAGAGCATGCTTCTTCCCTGGCTTCCTCAGGACTGAAAAAGGACTCACGGCT
CAAGACCCTAGAGATCGCTCTTGAGCAGAAGAAGGAAGAGTGCCTAAAAATGGAATCACAGTTG
AAAAAGGCACATGAAGCAACACTGGAAGCCAGAGCCAGCCCAGAGATGAGTGACCGAATACAGC
AATTGGAGAGAGAGATGGCCAGGTACAAAGATGAATCCAGCAAGGCCCAAACAGAAGTTGACCG
TCTCTTGGAAATCTTGAAAGAGGTGGAAAATGAGAAGAATGACAAAGATAAGAAGATAGCTGAG
TTGGAAAGGCAGGTGAAAGACCAGAATAAGAAGGTAGCGAATCTGAAGCACAAGGAGCAGGTGG
AGAAGAAGAAAAGTGCGCAGATGCTGGAGGAGGCCCGGAGGAGGGAGGACAGTCTCAGCGACAG
CTCTCAGCAGCTGCAGGACAGTCTCCGTAAGAAGGATGACAGGATTGAAGAGCTGGAAGAAGCA
CTGAGAGAAAGTGTACAGATAACTGCAGAGCGGGAAATGGTGCTGGCACAAGAGGAATCAGCCA
GGACCAATGCTGAGAAACAGGTGGAAGAGCTGTTGATGGCTATGGAGAAGGTGAAGCAAGAGCT
GGAGTCCATGAAAGCTAAGCTGTCCTCCACCCAGCAGTCTCTGGCAGAGAAGGAGACACATCTA
ACCAACCTCCGGGCAGAGAGAAGGAAACACTTAGAGGAGGTTCTGGAGATGAAACAAGAAGCTC
TTCTGGCTGCCATTAGCGAAAAGGACGCTAACATAGCCCTCCTGGAGCTCTCCTCCTCGAAGAA
AAAGACCCAAGAAGAAGTGGCCGCACTGAAACGGGAAAAGGACCGCCTGGTGCAGCAGCTCAAA
CAGCAGACACAAAATCGAATGAAACTAATGGCTGACAACTATGAAGATGACCACTTCAGATCCT
CCCGTTCCAATCAGACGAACCATAAACCCTCCCCAGACCAGATCATCCAGCCCCTTTTAGAACT
TGACCAAAATAGAAGCAAGTTAAAGTTGTATATTGGACACCTGACAGCCCTCTGCCATGACCGA
GACCCCTTAATCCTCCGTGGACTCACTCCACCAGCTTCCTATAATGCAGATGGTGAACAGGCAG
CTTGGGAGAATGAGCTGCAGAAGATGACTCAGGAGCAGCTTCAGAACGAGTTAGAGAAAGTTGA
AGGGGACAATGCAGAGCTGCAGGAGTTCGCCAACACCATTCTCCAGCAGATAGCTGATCACTGC
CCTGACATCCTCGAACAAGTTGTCAATGCCCTGGAAGAGTCCTCCTGACATGCTCCAAGAAAGG
TGACCAAGGAGCCAGAGAGGAGAACCTGAGGAACGGGTGTCTGGGCCGCCCCATCCTAGACCCT
GCCAGCTGGGCGTGCCAGTCCAGCCATCTGTGTCTGTCTCTGCCTTCCGCTTTGAATGCTGCCT
GCACACGTCTCCTGGTCTCCATGAAAAACTGCCCTTGGCGTCAGCAGTGGAGGGCTGGGGGTGC
ACTCCGCCCTTCCAGAAACAGGAAGCAGAAGCCCACTCAGGTTCTGTGCTTTGAAAGCTTGGAG
CTGAAGCATTAGCATGAGTGCTTTCTCCTCGGAGGGTAGAGAAGGAGGAAGGGTGACCAGGGAC
GAGAAGAGCGAGTGCTCCTCTCTGTGTCAAGCTGCCTCGTGTTTACCATGTTTACCGTCATGAA
CCCCAGGTACAGGCTGGCTTCATGCAGCTTAGCTCTTGGCCTGTTGCCTCTCTCACCTGCACTG
CTTTTAGCTGACAGGAGGAAGATGTTCACAGTGGTCACCCATCTCACGCTTCTTTAAGGCCTTT
GACCTTCCCATGCTGCACGGTTAGGTTAATGTCTGACTGAAGAGAAGAGGACTTAATGTACAGG
GCCTGTTGTCACTGCTTGCAGTTTTGCTCCTCAGAAGATGTCCCGGAGGGCCAGTCTGATTCCT
CCTGAACATTATCCACAATGCTCTCTGCTCCCCAAGCTGCTGTAGAACAGGGGTTGCTGGTGTC
TGTGACCCATCCTGCCTTCTCAGCTTTACTCTTAAGGAACATTCTCAGAGCCACAGCCTCATAG
CCTGCCTAGCAACTGAGTTTGTCTTAATTCACACCCATTCCCTCCTCCATTCATTCATTCAAAA
ATGTTATGAAATGCCCACTGTATACACATCAGTGTGCACGGTGCCCATCCTTGGAAAAGGCTCA
AATAGGGATGGTGTGGAAGTCCGTGAGACATGCTCAGTTGAATCATGGCAGTGAACTCATACCT
TCTCCCCTCTTCCCAGAAACATCTTCAGACCAGCATTCTTTGTTCTCCACTCTCATGGCATCTG
TGGGCTTGGGTGAGCCACGTCTTTGCTGGGAAGATCCCATTTGGCAGGTCAGGATTTTTGCTGT
CAGTGTTATTGCCCTGAAACATGTTCTGTTTAAGGAACTGTACATGCTCATTTGCGTCAGCTGA
CTGCTTAACACACCCATGCGCGCTTCGTGGACATAGCCAGCACTGTGCTGAGCTCAGGCAGAGC
CAGTTGAATGTCTCGGCATTTTGCAGACTTTCCCCCAGGTGTAGAGGACAGCTACCAGACATAG
TCAAGCTCTACAAGAGTGCAGCTCATGTCCAGTTCTTCATCCCTGAAGCAGACGCCTGACGCTG
CTGCCTTCTGAGGAGGCTGCTAAGGCCTGCTTTCTCCCTCTGCCCAGTTACACTCAAAGGAATT
TAACACTGCCCACAAATCTCTCACCGCCTTCAACCCAGGACATCATGCAGCCACTATTGTCACA
GTCACAGCGCTGGCTCCCCTTCTCTGCCACACAGTGTTCCTTTGTGGGTGCTGAGAGAGTTCCC
GTGAGGGTTCGGTGGACTCTGCCATGGACCTCTCACAGAGGTGCTTTTGGAGGTCCCAGCCTGG
CCACCGGGAATATGGAAATTAGGCCAAAATATGATAGTCCTTGCTGCTCATTTCTCAATGTTTT
TATTGTCCCGTCCGTAAATCCTGTAGAAGACCCCCCTGTATTGTAGGATAGGAAGGTTAGAATC
TTATTTAATTCTCATAACATAAGGAACCATTACCTAGTAACTGCTTCACAGGCTACAGTGGAAT
CCAGAAAGCTTAGAAGAGTCCAGGCCCACAGAAGTAGCCTAGCCCACCCCCGCCAGCTGCTGCT
CCAGCTGTTCTCTGAGGGACACCATAGGCACGACTCCTTATACGTACCTATCTGGTACTTAGTA
GAAGTACCACTTGCCACCCTTCCTAACTGGACACATGACCCAGTCCACCACATCCTGCTCCATC
GTCCCTCCAGAGAGGCTGCAGGAACCCTGCAGGACACGCTTGTTGAGAAGGCAAGTTTCTAAGG
CAAACCTTGTCTGATTGCTGCACCACAGCAAAGGATTCTCCTCCTCAGGTGGTGATCCAGCAAC
TCAAATGGCTCTGGAGACTGTGGAGCTAAAGTTGAACGTAAATGTAGTCTTCGTGTTGGGCAAA
GTCCTAGGGTATCTGGCATTCAGATCCTACTGACTACATTCATGAAGCCAATGTTTCCTAAATG
CTTAACTGCCACTGCACTGGGACACGCCATTCCATGACTGTCTTCACGCACGCATGTTCCTTCC
AGTAGCTGCCCTCAAGAGCTCACTGCATGTTGGCTAGGATCATCCCTCACTTCATTCCATCGTC
AAGCCTCATAGCTTTTGCACCTAGAGTGAAGGTGGCCTCCCTCCAGGCCTTTGGAGAAGGGTTA
AAGCAAGCATGTGTCACTATATAGGATGTGATACCCACAGACCCAAGTACCAGCAGACCCTGTG
TCAGCAGTGTCTACCCCAAGTGACATCATCAAGATGACAGTAGGAAACGAGGCTGGAAGCCAAC
CTTGGGCTGCTGGCTCTGCATACCTTAGTAGACTCTGTCCCTGGCCCTTGATGAGTGACTGATG
GCACATCTGATTGGGATTAGCAAGTATTAAAGACATTTAAGATGAGAAGTCAGAGTGGGCTTTA
GCAACTCGGAAATGTGAAGGGGTCCGTGGTCCCTGCCGGCCTTTATGCTCACGCTTGAGAAGGC
CCGAGTGTACCTCCTCACCAGCGGGCTTTAGAAGCCCTGGGAGAGCAGACTGGAATGAGACCAC
CAGCGGTGTAGCAGGTCGAGATGTGGCTGGCTGTGTCCTGTCCATCTGTTTGGCCTCCTGGGAA
GAAAGCGTTGGCTCAATTTCTTTCTCAGGAGAGATGAAGTCAGCACAGATGGTTCTCACGTGCT
ACTGTCCTGCCCTCCACTGTTGACACTGGGACTGGCTTGGCATCACACCCTCCTGTTTGTGAAG
CACAGACTCACTGGCCTCCCTCCAGGTCCTTGAAGAAGGGTCAGAGCAAGGATATGTTGCTCCA
CAGGATGTGACACCCACAGGCCTAAGTCCCAGCAGACCCTGTGTCAGCAGTCGGTCACTCAAGT
CTGCCTCACCTCCTGCCTGAAGAGGCCAGAGCCATGGAAAAGGAGAAAGAAGGATAAGGCTGTA
CCACAGGCCTGTCGGGCACCCACTGTCACTGCCAGTCTCAGAGATTTTGTTTAAAGATTTGTTC
TTTCCTGTGAACCAAGAGAACGTTCAGGGAAAAAGAATATATGCTTCACCTGGGGATCCTTCCG
AACAAAATGGCTGTCTGAACTCTTTTTAAACAGAAACTTTCCAAACTTTTTAGTGTCAAAATTG
TAACCAAGTGTCTCCTGATTCTTCCCAATGTGTTTGGCAAGTGCTGTGACCCTGTTGTAGGTAT
TTCTCCTCCTGCCTCTTCTGAGGGAGAAGTGACTTTAGGGGTTGACTTGAGGGAGCAGGTATCT
GTCCCGTCCTGCCACCTCTCTTGTATCTCTGCTTGTTGATATTGTCTGTGTGATTCAGAGAACG
GGGCAGTTACATTGTGTCCATTGTTGAGAATATTAAAATATTAAAAAAGTAGTTATAGAACTAA
AAAATTAAAGAGCTGTGTTTTAAAAGATGCAAACCCATAAATATGTTAACAAAGGGATTCAAGC
TATGGGCAGCCTAGCTCCTCCCCCTCCAGGTTGGTGCGGTGGTAGCCAGGCCAGCCCTTGGGAG
ACACACTGACCACACCTGAGTTAGGTGACTGCCTGGGAACAGGACACCTGCCCAGTGGTGCAGT
GAGAATCTGGGGCTCGCTCAGAGACTCTCCGTTGTGTCAGGGTTTTCTCTACATCCTCAGGACC
TCTGGGTAGAGGCGTTAAAGTTGGTGACCCCAGAACCACCCTCACCCTCACATTGGATCAAGCC
TCGTGTGCCTAGTGCTATGTTGTAACCTGGGCTTGAGCCTGGAGCTCCTGCTTGCAAGGCCACA
GGACCTCTTCCTGCCCACTTGGTGCTATCTCATCATAACCATCTAACAGGGCAGCCTGGTCTCC
TGGAGCCTGGGGGCCAGGGGCCGTGGGTGGCCCTCGGAGCTCAGCTCTCTCTGGCTCCTGATCT
TAGATTTTTCCTTTTGAAGCTTTTTAGACCCAAACTCCCTTGGCTTCAGAGATGTCCGAGTCAG
GGAGGGAAGTGAGCCAGGCTGAGGTGAGGAGATCCACCACTCTGCCACAGTAAGCACACTAGTC
CAGCCCCTCTTCCCTGCCACACCAGTATTACATCCATCCTTTAAAGATCTAGTCCCACCTGAGG
CACACGTCATCCCTCGGCCCAGCTGCCCCCAGTGCAGACTAGAAACCCGGGATGGACACACTGA
CGTTTCTTTGCACCCCTACTTTAGAAGAGGCATGTTGCACTTTAGTGGGGAGCCCAGAACACTG
GGCACTGGCTTCCTATAGCTTGAGTCCCTGTAGATAGCAGTGATGGCAGCCTGGTGGTTTGTGT
GAAGCAGCTGCAACTGCTGTCTTCAACTGCACACATGTGCAGTTCTAGAGTCAAATTCTGGCCT
GGTGATGACATTACAAAGACGCGATCGGTTCAACTTTGCCTTGGTAATTATTGTAAACACTTTG
TTCAACTTTTTTCTTTTTTATTCACAAACTAAATCCATCAGGAAATTATAAACTTATTTAAAAA
CTG

hide sequence

RefSeq Acc Id:

XM_006237230 ⟹ XP_006237292

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	152,763,664 - 153,055,704 (-)	NCBI
Rnor_6.0	4	152,087,393 - 152,380,021 (-)	NCBI
Rnor_5.0	4	219,174,705 - 219,465,108 (-)	NCBI

Sequence:

show sequence

CATTTGTCGTTTCCGACCGGGCTCTGCGCTCCCGGCCCTGGCTGGGCAGGGCAGAGTGCCCCTG
GGGAGGGGCGGAGCCGTAGATATGGCATAAGATATTTCTTCAAGATTGGACAGCTGGTGACCTG
CTATTTCTGACAGCCTTAAGCTGACTTTATAGCCATAGAGAAACCTCACGGACTTGTATTGTTG
TTTTCTACTCATACCATTTCTGGCACCTAAGTTCACCCTGCAACCATGTATGGAAGTGCTCGGT
CAGTGGGGAAAGTGGAACCAAGCAGCCAGAGTCCTGGGCGATCACCTCGGCTTCCTCGGTCCCC
TCGCTTAGGTCATCGGCGAACAAATAGCACAGGAGGGAGTTCTGGAAACAGTGTTGGAGGTGGC
AGTGGGAAAACCCTTTCAATGGAGAATATACAGTCCTTAAATGCTGCCTATGCTACATCTGGCC
CTATGTACCTAAGTGACCATGAAAACGTGGGTGCAGAAACACCTAAAAGCACCATGACACTTGG
CCGTTCTGGAGGACGCCTGCCTTACGGGGTTAGGATGACTGCTATGGGCAGCAGCCCCAACATA
GCAAGCAGTGGGGTTGCTAGTGATACCATAGCGTTTGGAGAGCATCACCTCCCTCCTGTTAGTA
TGGCGTCCACGGTACCTCACTCTCTTCGTCAAGCAAGAGATAACACCATCATGGATCTGCAGAC
GCAGCTGAAGGAAGTATTAAGAGAAAACGATCTTTTGAGGAAAGATGTGGAAGTAAAGGAGAGC
AAATTAAGTTCTTCGATGAATAGCATCAAGACCTTCTGGAGTCCAGAGCTGAAGAAAGAGCGGG
CCTTGAGAAAAGACGAAGCTTCCAAAATCACCATTTGGAAGGAGCAGTACCGAGTTGTGCAGGA
GGAAAACCAGCACATGCAGATGACAATCCAGGCTCTCCAGGATGAGCTGCGCATTCAGAGGGAC
TTGAATCAGCTGTTTCAGCAAGATAGCAGCAGTCGGACTGGGGAGCCTTGTGTGGCAGAGCTCA
CGGAGGAGAACTTCCAGAGGCTGCATGCTGAGCACGAGAGGCAAGCCAAGGAGCTGTTTCTCCT
GCGGAAGACCCTGGAGGAAATGGAGCTGAGGATTGAGACTCAGAAGCAAACCCTCAATGCTCGG
GATGAGTCCATTAAGAAGCTTCTGGAGATGCTACAGAGCAAAGGACTTTCTGCCAAAGCCACAG
AGGAAGACCATGAGAGAACGAGACGGCTGGCGGAGGCAGAGATGCACGTCCACCACCTAGAGAG
TCTTTTGGAGCAGAAGGAGAAGGAGAATAATATGTTGAGAGAGGAGATGCACCGGAGATTTGAG
AATGCCCCTGACTCTGCCAAGACAAAAGCCCTGCAAACCGTTATTGAAATGAAGGATTCAAAAA
TTTCTTCCATGGAGCGTGGGCTCCGAGACCTGGAAGAGGAAATTCAGATGCTGAAATCAAACGG
GGCTTTGAGCACAGAAGAGCGGGAGGAGGAGATGAAGCAAATGGAGGTGTACAGGAGCCACTCT
AAGTTCATGAAAAATAAGATTGGCCAGGTGAAACAGGAATTGTCCAGAAAGGACACAGAATTAC
TAGCCTTACAGACAAAGCTAGAAACTCTGACGAACCAATTCTCAGACAGCAAGCAGCATATTGA
GGTGCTGAAAGAGTCCCTCACTGCTAAGGAACAAAGGGCCGCCATCCTGCAGACTGAGGTGGAT
GCTCTTCGATTGCGTTTGGAAGAAAAGGAGACGATGCTGAATAAAAAAACCAAACAAATCCAAG
ATATGGCTGAGGAGAAGGGCACACAAGCTGGAGAGATACACGACCTCAAGGACATGCTGGACGT
GAAGGAGCGGAAGGTCAATGTTCTGCAGAAGAAGATAGAAAATCTTCAGGAGCAGCTAAGAGAT
AAGGAGAAGCAGATGAGCAGCCTGAAAGAGCGAGTCAAGTCTCTGCAGGCAGACACCACCAACA
CCGACACAGCTCTGACGACGCTGGAGGAGGCCCTTGCAGATAAAGAACGAACAATTGAACGCTT
AAAGGAACAACGGGACAGAGATGAGCGAGAGAAGCAAGAGGAGATTGATACCTACAAAAAAGAT
CTTAAAGACTTGAAAGAAAAAGTCAGCCTATTGCAAGGAGACCTCTCAGAGAAGGAGGCTTCTC
TTTTGGATCTCAAAGAGCATGCTTCTTCCCTGGCTTCCTCAGGACTGAAAAAGGACTCACGGCT
CAAGACCCTAGAGATCGCTCTTGAGCAGAAGAAGGAAGAGTGCCTAAAAATGGAATCACAGTTG
AAAAAGGCACATGAAGCAACACTGGAAGCCAGAGCCAGCCCAGAGATGAGTGACCGAATACAGC
AATTGGAGAGAGAGATGGCCAGGTACAAAGATGAATCCAGCAAGGCCCAAACAGAAGTTGACCG
TCTCTTGGAAATCTTGAAAGAGGTGGAAAATGAGAAGAATGACAAAGATAAGAAGATAGCTGAG
TTGGAAAGGCAGGTGAAAGACCAGAATAAGAAGGTAGCGAATCTGAAGCACAAGGAGCAGGTGG
AGAAGAAGAAAAGTGCGCAGATGCTGGAGGAGGCCCGGAGGAGGGAGGACAGTCTCAGCGACAG
CTCTCAGCAGCTGCAGGTGGAAGAGCTGTTGATGGCTATGGAGAAGGTGAAGCAAGAGCTGGAG
TCCATGAAAGCTAAGCTGTCCTCCACCCAGCAGTCTCTGGCAGAGAAGGAGACACATCTAACCA
ACCTCCGGGCAGAGAGAAGGAAACACTTAGAGGAGGTTCTGGAGATGAAACAAGAAGCTCTTCT
GGCTGCCATTAGCGAAAAGGACGCTAACATAGCCCTCCTGGAGCTCTCCTCCTCGAAGAAAAAG
ACCCAAGAAGAAGTGGCCGCACTGAAACGGGAAAAGGACCGCCTGGTGCAGCAGCTCAAACAGC
AGACACAAAATCGAATGAAACTAATGGCTGACAACTATGAAGATGACCACTTCAGATCCTCCCG
TTCCAATCAGACGAACCATAAACCCTCCCCAGACCAGATCATCCAGCCCCTTTTAGAACTTGAC
CAAAATAGAAGCAAGTTAAAGTTGTATATTGGACACCTGACAGCCCTCTGCCATGACCGAGACC
CCTTAATCCTCCGTGGACTCACTCCACCAGCTTCCTATAATGCAGATGGTGAACAGGCAGCTTG
GGAGAATGAGCTGCAGAAGATGACTCAGGAGCAGCTTCAGAACGAGTTAGAGAAAGTTGAAGGG
GACAATGCAGAGCTGCAGGAGTTCGCCAACACCATTCTCCAGCAGATAGCTGATCACTGCCCTG
ACATCCTCGAACAAGTTGTCAATGCCCTGGAAGAGTCCTCCTGACATGCTCCAAGAAAGGTGAC
CAAGGAGCCAGAGAGGAGAACCTGAGGAACGGGTGTCTGGGCCGCCCCATCCTAGACCCTGCCA
GCTGGGCGTGCCAGTCCAGCCATCTGTGTCTGTCTCTGCCTTCCGCTTTGAATGCTGCCTGCAC
ACGTCTCCTGGTCTCCATGAAAAACTGCCCTTGGCGTCAGCAGTGGAGGGCTGGGGGTGCACTC
CGCCCTTCCAGAAACAGGAAGCAGAAGCCCACTCAGGTTCTGTGCTTTGAAAGCTTGGAGCTGA
AGCATTAGCATGAGTGCTTTCTCCTCGGAGGGTAGAGAAGGAGGAAGGGTGACCAGGGACGAGA
AGAGCGAGTGCTCCTCTCTGTGTCAAGCTGCCTCGTGTTTACCATGTTTACCGTCATGAACCCC
AGGTACAGGCTGGCTTCATGCAGCTTAGCTCTTGGCCTGTTGCCTCTCTCACCTGCACTGCTTT
TAGCTGACAGGAGGAAGATGTTCACAGTGGTCACCCATCTCACGCTTCTTTAAGGCCTTTGACC
TTCCCATGCTGCACGGTTAGGTTAATGTCTGACTGAAGAGAAGAGGACTTAATGTACAGGGCCT
GTTGTCACTGCTTGCAGTTTTGCTCCTCAGAAGATGTCCCGGAGGGCCAGTCTGATTCCTCCTG
AACATTATCCACAATGCTCTCTGCTCCCCAAGCTGCTGTAGAACAGGGGTTGCTGGTGTCTGTG
ACCCATCCTGCCTTCTCAGCTTTACTCTTAAGGAACATTCTCAGAGCCACAGCCTCATAGCCTG
CCTAGCAACTGAGTTTGTCTTAATTCACACCCATTCCCTCCTCCATTCATTCATTCAAAAATGT
TATGAAATGCCCACTGTATACACATCAGTGTGCACGGTGCCCATCCTTGGAAAAGGCTCAAATA
GGGATGGTGTGGAAGTCCGTGAGACATGCTCAGTTGAATCATGGCAGTGAACTCATACCTTCTC
CCCTCTTCCCAGAAACATCTTCAGACCAGCATTCTTTGTTCTCCACTCTCATGGCATCTGTGGG
CTTGGGTGAGCCACGTCTTTGCTGGGAAGATCCCATTTGGCAGGTCAGGATTTTTGCTGTCAGT
GTTATTGCCCTGAAACATGTTCTGTTTAAGGAACTGTACATGCTCATTTGCGTCAGCTGACTGC
TTAACACACCCATGCGCGCTTCGTGGACATAGCCAGCACTGTGCTGAGCTCAGGCAGAGCCAGT
TGAATGTCTCGGCATTTTGCAGACTTTCCCCCAGGTGTAGAGGACAGCTACCAGACATAGTCAA
GCTCTACAAGAGTGCAGCTCATGTCCAGTTCTTCATCCCTGAAGCAGACGCCTGACGCTGCTGC
CTTCTGAGGAGGCTGCTAAGGCCTGCTTTCTCCCTCTGCCCAGTTACACTCAAAGGAATTTAAC
ACTGCCCACAAATCTCTCACCGCCTTCAACCCAGGACATCATGCAGCCACTATTGTCACAGTCA
CAGCGCTGGCTCCCCTTCTCTGCCACACAGTGTTCCTTTGTGGGTGCTGAGAGAGTTCCCGTGA
GGGTTCGGTGGACTCTGCCATGGACCTCTCACAGAGGTGCTTTTGGAGGTCCCAGCCTGGCCAC
CGGGAATATGGAAATTAGGCCAAAATATGATAGTCCTTGCTGCTCATTTCTCAATGTTTTTATT
GTCCCGTCCGTAAATCCTGTAGAAGACCCCCCTGTATTGTAGGATAGGAAGGTTAGAATCTTAT
TTAATTCTCATAACATAAGGAACCATTACCTAGTAACTGCTTCACAGGCTACAGTGGAATCCAG
AAAGCTTAGAAGAGTCCAGGCCCACAGAAGTAGCCTAGCCCACCCCCGCCAGCTGCTGCTCCAG
CTGTTCTCTGAGGGACACCATAGGCACGACTCCTTATACGTACCTATCTGGTACTTAGTAGAAG
TACCACTTGCCACCCTTCCTAACTGGACACATGACCCAGTCCACCACATCCTGCTCCATCGTCC
CTCCAGAGAGGCTGCAGGAACCCTGCAGGACACGCTTGTTGAGAAGGCAAGTTTCTAAGGCAAA
CCTTGTCTGATTGCTGCACCACAGCAAAGGATTCTCCTCCTCAGGTGGTGATCCAGCAACTCAA
ATGGCTCTGGAGACTGTGGAGCTAAAGTTGAACGTAAATGTAGTCTTCGTGTTGGGCAAAGTCC
TAGGGTATCTGGCATTCAGATCCTACTGACTACATTCATGAAGCCAATGTTTCCTAAATGCTTA
ACTGCCACTGCACTGGGACACGCCATTCCATGACTGTCTTCACGCACGCATGTTCCTTCCAGTA
GCTGCCCTCAAGAGCTCACTGCATGTTGGCTAGGATCATCCCTCACTTCATTCCATCGTCAAGC
CTCATAGCTTTTGCACCTAGAGTGAAGGTGGCCTCCCTCCAGGCCTTTGGAGAAGGGTTAAAGC
AAGCATGTGTCACTATATAGGATGTGATACCCACAGACCCAAGTACCAGCAGACCCTGTGTCAG
CAGTGTCTACCCCAAGTGACATCATCAAGATGACAGTAGGAAACGAGGCTGGAAGCCAACCTTG
GGCTGCTGGCTCTGCATACCTTAGTAGACTCTGTCCCTGGCCCTTGATGAGTGACTGATGGCAC
ATCTGATTGGGATTAGCAAGTATTAAAGACATTTAAGATGAGAAGTCAGAGTGGGCTTTAGCAA
CTCGGAAATGTGAAGGGGTCCGTGGTCCCTGCCGGCCTTTATGCTCACGCTTGAGAAGGCCCGA
GTGTACCTCCTCACCAGCGGGCTTTAGAAGCCCTGGGAGAGCAGACTGGAATGAGACCACCAGC
GGTGTAGCAGGTCGAGATGTGGCTGGCTGTGTCCTGTCCATCTGTTTGGCCTCCTGGGAAGAAA
GCGTTGGCTCAATTTCTTTCTCAGGAGAGATGAAGTCAGCACAGATGGTTCTCACGTGCTACTG
TCCTGCCCTCCACTGTTGACACTGGGACTGGCTTGGCATCACACCCTCCTGTTTGTGAAGCACA
GACTCACTGGCCTCCCTCCAGGTCCTTGAAGAAGGGTCAGAGCAAGGATATGTTGCTCCACAGG
ATGTGACACCCACAGGCCTAAGTCCCAGCAGACCCTGTGTCAGCAGTCGGTCACTCAAGTCTGC
CTCACCTCCTGCCTGAAGAGGCCAGAGCCATGGAAAAGGAGAAAGAAGGATAAGGCTGTACCAC
AGGCCTGTCGGGCACCCACTGTCACTGCCAGTCTCAGAGATTTTGTTTAAAGATTTGTTCTTTC
CTGTGAACCAAGAGAACGTTCAGGGAAAAAGAATATATGCTTCACCTGGGGATCCTTCCGAACA
AAATGGCTGTCTGAACTCTTTTTAAACAGAAACTTTCCAAACTTTTTAGTGTCAAAATTGTAAC
CAAGTGTCTCCTGATTCTTCCCAATGTGTTTGGCAAGTGCTGTGACCCTGTTGTAGGTATTTCT
CCTCCTGCCTCTTCTGAGGGAGAAGTGACTTTAGGGGTTGACTTGAGGGAGCAGGTATCTGTCC
CGTCCTGCCACCTCTCTTGTATCTCTGCTTGTTGATATTGTCTGTGTGATTCAGAGAACGGGGC
AGTTACATTGTGTCCATTGTTGAGAATATTAAAATATTAAAAAAGTAGTTATAGAACTAAAAAA
TTAAAGAGCTGTGTTTTAAAAGATGCAAACCCATAAATATGTTAACAAAGGGATTCAAGCTATG
GGCAGCCTAGCTCCTCCCCCTCCAGGTTGGTGCGGTGGTAGCCAGGCCAGCCCTTGGGAGACAC
ACTGACCACACCTGAGTTAGGTGACTGCCTGGGAACAGGACACCTGCCCAGTGGTGCAGTGAGA
ATCTGGGGCTCGCTCAGAGACTCTCCGTTGTGTCAGGGTTTTCTCTACATCCTCAGGACCTCTG
GGTAGAGGCGTTAAAGTTGGTGACCCCAGAACCACCCTCACCCTCACATTGGATCAAGCCTCGT
GTGCCTAGTGCTATGTTGTAACCTGGGCTTGAGCCTGGAGCTCCTGCTTGCAAGGCCACAGGAC
CTCTTCCTGCCCACTTGGTGCTATCTCATCATAACCATCTAACAGGGCAGCCTGGTCTCCTGGA
GCCTGGGGGCCAGGGGCCGTGGGTGGCCCTCGGAGCTCAGCTCTCTCTGGCTCCTGATCTTAGA
TTTTTCCTTTTGAAGCTTTTTAGACCCAAACTCCCTTGGCTTCAGAGATGTCCGAGTCAGGGAG
GGAAGTGAGCCAGGCTGAGGTGAGGAGATCCACCACTCTGCCACAGTAAGCACACTAGTCCAGC
CCCTCTTCCCTGCCACACCAGTATTACATCCATCCTTTAAAGATCTAGTCCCACCTGAGGCACA
CGTCATCCCTCGGCCCAGCTGCCCCCAGTGCAGACTAGAAACCCGGGATGGACACACTGACGTT
TCTTTGCACCCCTACTTTAGAAGAGGCATGTTGCACTTTAGTGGGGAGCCCAGAACACTGGGCA
CTGGCTTCCTATAGCTTGAGTCCCTGTAGATAGCAGTGATGGCAGCCTGGTGGTTTGTGTGAAG
CAGCTGCAACTGCTGTCTTCAACTGCACACATGTGCAGTTCTAGAGTCAAATTCTGGCCTGGTG
ATGACATTACAAAGACGCGATCGGTTCAACTTTGCCTTGGTAATTATTGTAAACACTTTGTTCA
ACTTTTTTCTTTTTTATTCACAAACTAAATCCATCAGGAAATTATAAACTTATTTAAAAACTG

hide sequence

RefSeq Acc Id:

XM_017592490 ⟹ XP_017447979

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	152,788,247 - 153,055,704 (-)	NCBI
Rnor_6.0	4	152,112,020 - 152,380,021 (-)	NCBI

Sequence:

show sequence

CATTTGTCGTTTCCGACCGGGCTCTGCGCTCCCGGCCCTGGCTGGGCAGGGCAGAGTGCCCCTG
GGGAGGGGCGGAGCCGTAGATATGGCATAAGATATTTCTTCAAGATTGGACAGCTGGTGACCTG
CTATTTCTGACAGCCTTAAGCTGACTTTATAGCCATAGAGAAACCTCACGGACTTGTATTGTTG
TTTTCTACTCATACCATTTCTGGCACCTAAGTTCACCCTGCAACCATGTATGGAAGTGCTCGGT
CAGTGGGGAAAGTGGAACCAAGCAGCCAGAGTCCTGGGCGATCACCTCGGCTTCCTCGGTCCCC
TCGCTTAGGTCATCGGCGAACAAATAGCACAGGAGGGAGTTCTGGAAACAGTGTTGGAGGTGGC
AGTGGGAAAACCCTTTCAATGGAGAATATACAGTCCTTAAATGCTGCCTATGCTACATCTGGCC
CTATGTACCTAAGTGACCATGAAAACGTGGGTGCAGAAACACCTAAAAGCACCATGACACTTGG
CCGTTCTGGAGGACGCCTGCCTTACGGGGTTAGGATGACTGCTATGGGCAGCAGCCCCAACATA
GCAAGCAGTGGGGTTGCTAGTGATACCATAGCGTTTGGAGAGCATCACCTCCCTCCTGTTAGTA
TGGCGTCCACGGTACCTCACTCTCTTCGTCAAGCAAGAGATAACACCATCATGGATCTGCAGAC
GCAGCTGAAGGAAGTATTAAGAGAAAACGATCTTTTGAGGAAAGATGTGGAAGTAAAGGAGAGC
AAATTAAGTTCTTCGATGAATAGCATCAAGACCTTCTGGAGTCCAGAGCTGAAGAAAGAGCGGG
CCTTGAGAAAAGACGAAGCTTCCAAAATCACCATTTGGAAGGAGCAGTACCGAGTTGTGCAGGA
GGAAAACCAGCACATGCAGATGACAATCCAGGCTCTCCAGGATGAGCTGCGCATTCAGAGGGAC
TTGAATCAGCTGTTTCAGCAAGATAGCAGCAGTCGGACTGGGGAGCCTTGTGTGGCAGAGCTCA
CGGAGGAGAACTTCCAGAGGCTGCATGCTGAGCACGAGAGGCAAGCCAAGGAGCTGTTTCTCCT
GCGGAAGACCCTGGAGGAAATGGAGCTGAGGATTGAGACTCAGAAGCAAACCCTCAATGCTCGG
GATGAGTCCATTAAGAAGCTTCTGGAGATGCTACAGAGCAAAGGACTTTCTGCCAAAGCCACAG
AGGAAGACCATGAGAGAACGAGACGGCTGGCGGAGGCAGAGATGCACGTCCACCACCTAGAGAG
TCTTTTGGAGCAGAAGGAGAAGGAGAATAATATGTTGAGAGAGGAGATGCACCGGAGATTTGAG
AATGCCCCTGACTCTGCCAAGACAAAAGCCCTGCAAACCGTTATTGAAATGAAGGATTCAAAAA
TTTCTTCCATGGAGCGTGGGCTCCGAGACCTGGAAGAGGAAATTCAGATGCTGAAATCAAACGG
GGCTTTGAGCACAGAAGAGCGGGAGGAGGAGATGAAGCAAATGGAGGTGTACAGGAGCCACTCT
AAGTTCATGAAAAATAAGATTGGCCAGGTGAAACAGGAATTGTCCAGAAAGGACACAGAATTAC
TAGCCTTACAGACAAAGCTAGAAACTCTGACGAACCAATTCTCAGACAGCAAGCAGCATATTGA
GGTGCTGAAAGAGTCCCTCACTGCTAAGGAACAAAGGGCCGCCATCCTGCAGACTGAGGTGGAT
GCTCTTCGATTGCGTTTGGAAGAAAAGGAGACGATGCTGAATAAAAAAACCAAACAAATCCAAG
ATATGGCTGAGGAGAAGGGCACACAAGCTGGAGAGATACACGACCTCAAGGACATGCTGGACGT
GAAGGAGCGGAAGGTCAATGTTCTGCAGAAGAAGATAGAAAATCTTCAGGAGCAGCTAAGAGAT
AAGGAGAAGCAGATGAGCAGCCTGAAAGAGCGAGTCAAGTCTCTGCAGGCAGACACCACCAACA
CCGACACAGCTCTGACGACGCTGGAGGAGGCCCTTGCAGATAAAGAACGAACAATTGAACGCTT
AAAGGAACAACGGGACAGAGATGAGCGAGAGAAGCAAGAGGAGATTGATACCTACAAAAAAGAT
CTTAAAGACTTGAAAGAAAAAGTCAGCCTATTGCAAGGAGACCTCTCAGAGAAGGAGGCTTCTC
TTTTGGATCTCAAAGAGCATGCTTCTTCCCTGGCTTCCTCAGGACTGAAAAAGGACTCACGGCT
CAAGACCCTAGAGATCGCTCTTGAGCAGAAGAAGGAAGAGTGCCTAAAAATGGAATCACAGTTG
AAAAAGGCACATGAAGCAACACTGGAAGCCAGAGCCAGCCCAGAGATGAGTGACCGAATACAGC
AATTGGAGAGAGAGATGGCCAGGTACAAAGATGAATCCAGCAAGGCCCAAACAGAAGTTGACCG
TCTCTTGGAAATCTTGAAAGAGGTGGAAAATGAGAAGAATGACAAAGATAAGAAGATAGCTGAG
TTGGAAAGTCTCACCTCAAGGCAGGTGAAAGACCAGAATAAGAAGGTAGCGAATCTGAAGCACA
AGGAGCAGGTGGAGAAGAAGAAAAGTGCGCAGATGCTGGAGGAGGCCCGGAGGAGGGAGGACAG
TCTCAGCGACAGCTCTCAGCAGCTGCAGGACAGTCTCCGTAAGAAGGATGACAGGATTGAAGAG
CTGGAAGAAGCACTGAGAGAAAGTGTACAGATAACTGCAGAGCGGGAAATGGTGCTGGCACAAG
AGGAATCAGCCAGGACCAATGCTGAGAAACAGGTGGAAGAGCTGTTGATGGCTATGGAGAAGGT
GAAGCAAGAGCTGGAGTCCATGAAAGCTAAGCTGTCCTCCACCCAGCAGTCTCTGGCAGAGAAG
GAGACACATCTAACCAACCTCCGGGCAGAGAGAAGGAAACACTTAGAGGAGGTTCTGGAGATGA
AACAAGAAGCTCTTCTGGCTGCCATTAGCGAAAAGGACGCTAACATAGCCCTCCTGGAGCTCTC
CTCCTCGAAGAAAAAGACCCAAGAAGAAGTGGCCGCACTGAAACGGGAAAAGGACCGCCTGGTG
CAGCAGCTCAAACAGCAGACACAAAATCGAATGAAACTAATGGCTGACAACTATGAAGATGACC
ACTTCAGATCCTCCCGTTCCAATCAGACGAACCATAAACCCTCCCCAGACCAGGATGAGGAGGA
GGGTATATGGGCATAGCCAATCAGATGCTCTTAGTTCAGCCATTTTGTTCAGAACGATCATCCA
GCCCCTTTTAGAACTTGACCAAAATAGAAGCAAGTTAAAGTTGTATATTGGACACCTGACAGCC
CTCTGCCATG

hide sequence

RefSeq Acc Id:

XM_017592491 ⟹ XP_017447980

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	152,788,247 - 153,055,705 (-)	NCBI
Rnor_6.0	4	152,112,020 - 152,380,021 (-)	NCBI

Sequence:

show sequence

CATTTGTCGTTTCCGACCGGGCTCTGCGCTCCCGGCCCTGGCTGGGCAGGGCAGAGTGCCCCTG
GGGAGGGGCGGAGCCGTAGATATGGCATAAGATATTTCTTCAAGATTGGACAGCTGGTGACCTG
CTATTTCTGACAGCCTTAAGCTGACTTTATAGCCATAGAGAAACCTCACGGACTTGTATTGTTG
TTTTCTACTCATACCATTTCTGGCACCTAAGTTCACCCTGCAACCATGTATGGAAGTGCTCGGT
CAGTGGGGAAAGTGGAACCAAGCAGCCAGAGTCCTGGGCGATCACCTCGGCTTCCTCGGTCCCC
TCGCTTAGGTCATCGGCGAACAAATAGCACAGGAGGGAGTTCTGGAAACAGTGTTGGAGGTGGC
AGTGGGAAAACCCTTTCAATGGAGAATATACAGTCCTTAAATGCTGCCTATGCTACATCTGGCC
CTATGTACCTAAGTGACCATGAAAACGTGGGTGCAGAAACACCTAAAAGCACCATGACACTTGG
CCGTTCTGGAGGACGCCTGCCTTACGGGGTTAGGATGACTGCTATGGGCAGCAGCCCCAACATA
GCAAGCAGTGGGGTTGCTAGTGATACCATAGCGTTTGGAGAGCATCACCTCCCTCCTGTTAGTA
TGGCGTCCACGGTACCTCACTCTCTTCGTCAAGCAAGAGATAACACCATCATGGATCTGCAGAC
GCAGCTGAAGGAAGTATTAAGAGAAAACGATCTTTTGAGGAAAGATGTGGAAGTAAAGGAGAGC
AAATTAAGTTCTTCGATGAATAGCATCAAGACCTTCTGGAGTCCAGAGCTGAAGAAAGAGCGGG
CCTTGAGAAAAGACGAAGCTTCCAAAATCACCATTTGGAAGGAGCAGTACCGAGTTGTGCAGGA
GGAAAACCAGCACATGCAGATGACAATCCAGGCTCTCCAGGATGAGCTGCGCATTCAGAGGGAC
TTGAATCAGCTGTTTCAGCAAGATAGCAGCAGTCGGACTGGGGAGCCTTGTGTGGCAGAGCTCA
CGGAGGAGAACTTCCAGAGGCTGCATGCTGAGCACGAGAGGCAAGCCAAGGAGCTGTTTCTCCT
GCGGAAGACCCTGGAGGAAATGGAGCTGAGGATTGAGACTCAGAAGCAAACCCTCAATGCTCGG
GATGAGTCCATTAAGAAGCTTCTGGAGATGCTACAGAGCAAAGGACTTTCTGCCAAAGCCACAG
AGGAAGACCATGAGAGAACGAGACGGCTGGCGGAGGCAGAGATGCACGTCCACCACCTAGAGAG
TCTTTTGGAGCAGAAGGAGAAGGAGAATAATATGTTGAGAGAGGAGATGCACCGGAGATTTGAG
AATGCCCCTGACTCTGCCAAGACAAAAGCCCTGCAAACCGTTATTGAAATGAAGGATTCAAAAA
TTTCTTCCATGGAGCGTGGGCTCCGAGACCTGGAAGAGGAAATTCAGATGCTGAAATCAAACGG
GGCTTTGAGCACAGAAGAGCGGGAGGAGGAGATGAAGCAAATGGAGGTGTACAGGAGCCACTCT
AAGTTCATGAAAAATAAGGTAGAGCAACTGAAGGAGGAGCTAAGTTCCAAAGATGCTCAAGGGG
AGGAGCTGAAAAAGAGAGCGGCTGGTCTTCAGTCTGAGATTGGCCAGGTGAAACAGGAATTGTC
CAGAAAGGACACAGAATTACTAGCCTTACAGACAAAGCTAGAAACTCTGACGAACCAATTCTCA
GACAGCAAGCAGCATATTGAGGTGCTGAAAGAGTCCCTCACTGCTAAGGAACAAAGGGCCGCCA
TCCTGCAGACTGAGGTGGATGCTCTTCGATTGCGTTTGGAAGAAAAGGAGACGATGCTGAATAA
AAAAACCAAACAAATCCAAGATATGGCTGAGGAGAAGGGCACACAAGCTGGAGAGATACACGAC
CTCAAGGACATGCTGGACGTGAAGGAGCGGAAGGTCAATGTTCTGCAGAAGAAGATAGAAAATC
TTCAGGAGCAGCTAAGAGATAAGGAGAAGCAGATGAGCAGCCTGAAAGAGCGAGTCAAGTCTCT
GCAGGCAGACACCACCAACACCGACACAGCTCTGACGACGCTGGAGGAGGCCCTTGCAGATAAA
GAACGAACAATTGAACGCTTAAAGGAACAACGGGACAGAGATGAGCGAGAGAAGCAAGAGGAGA
TTGATACCTACAAAAAAGATCTTAAAGACTTGAAAGAAAAAGTCAGCCTATTGCAAGGAGACCT
CTCAGAGAAGGAGGCTTCTCTTTTGGATCTCAAAGAGCATGCTTCTTCCCTGGCTTCCTCAGGA
CTGAAAAAGGACTCACGGCTCAAGACCCTAGAGATCGCTCTTGAGCAGAAGAAGGAAGAGTGCC
TAAAAATGGAATCACAGTTGAAAAAGGCACATGAAGCAACACTGGAAGCCAGAGCCAGCCCAGA
GATGAGTGACCGAATACAGCAATTGGAGAGAGAGATGGCCAGGTACAAAGATGAATCCAGCAAG
GCCCAAACAGAAGTTGACCGTCTCTTGGAAATCTTGAAAGAGGTGGAAAATGAGAAGAATGACA
AAGATAAGAAGATAGCTGAGTTGGAAAGTCTCACCTCAAGGCAGGTGAAAGACCAGAATAAGAA
GGTAGCGAATCTGAAGCACAAGGAGCAGGTGGAGAAGAAGAAAAGTGCGCAGATGCTGGAGGAG
GCCCGGAGGAGGGAGGACAGTCTCAGCGACAGCTCTCAGCAGCTGCAGGTGGAAGAGCTGTTGA
TGGCTATGGAGAAGGTGAAGCAAGAGCTGGAGTCCATGAAAGCTAAGCTGTCCTCCACCCAGCA
GTCTCTGGCAGAGAAGGAGACACATCTAACCAACCTCCGGGCAGAGAGAAGGAAACACTTAGAG
GAGGTTCTGGAGATGAAACAAGAAGCTCTTCTGGCTGCCATTAGCGAAAAGGACGCTAACATAG
CCCTCCTGGAGCTCTCCTCCTCGAAGAAAAAGACCCAAGAAGAAGTGGCCGCACTGAAACGGGA
AAAGGACCGCCTGGTGCAGCAGCTCAAACAGCAGACACAAAATCGAATGAAACTAATGGCTGAC
AACTATGAAGATGACCACTTCAGATCCTCCCGTTCCAATCAGACGAACCATAAACCCTCCCCAG
ACCAGGATGAGGAGGAGGGTATATGGGCATAGCCAATCAGATGCTCTTAGTTCAGCCATTTTGT
TCAGAACGATCATCCAGCCCCTTTTAGAACTTGACCAAAATAGAAGCAAGTTAAAGTTGTATAT
TGGACACCTGACAGCCCTCTGCCATG

hide sequence

RefSeq Acc Id:

XM_039107147 ⟹ XP_038963075

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	152,763,664 - 153,055,705 (-)	NCBI

RefSeq Acc Id:

XM_039107148 ⟹ XP_038963076

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	152,763,664 - 153,055,704 (-)	NCBI

RefSeq Acc Id:

XM_039107150 ⟹ XP_038963078

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	152,763,664 - 153,055,706 (-)	NCBI

RefSeq Acc Id:

XM_039107151 ⟹ XP_038963079

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	152,788,247 - 153,055,704 (-)	NCBI

RefSeq Acc Id:

XM_039107152 ⟹ XP_038963080

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	152,788,247 - 153,055,705 (-)	NCBI

RefSeq Acc Id:

XM_039107154 ⟹ XP_038963082

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	152,865,933 - 153,055,706 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001381811	(Get FASTA)	NCBI Sequence Viewer
	NP_001381812	(Get FASTA)	NCBI Sequence Viewer
	NP_001381813	(Get FASTA)	NCBI Sequence Viewer
	NP_740769	(Get FASTA)	NCBI Sequence Viewer
	XP_006237286	(Get FASTA)	NCBI Sequence Viewer
	XP_006237287	(Get FASTA)	NCBI Sequence Viewer
	XP_006237288	(Get FASTA)	NCBI Sequence Viewer
	XP_006237289	(Get FASTA)	NCBI Sequence Viewer
	XP_006237292	(Get FASTA)	NCBI Sequence Viewer
	XP_017447979	(Get FASTA)	NCBI Sequence Viewer
	XP_017447980	(Get FASTA)	NCBI Sequence Viewer
	XP_038963075	(Get FASTA)	NCBI Sequence Viewer
	XP_038963076	(Get FASTA)	NCBI Sequence Viewer
	XP_038963078	(Get FASTA)	NCBI Sequence Viewer
	XP_038963079	(Get FASTA)	NCBI Sequence Viewer
	XP_038963080	(Get FASTA)	NCBI Sequence Viewer
	XP_038963082	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAN39293	(Get FASTA)	NCBI Sequence Viewer
	AAO25554	(Get FASTA)	NCBI Sequence Viewer
	EDM02050	(Get FASTA)	NCBI Sequence Viewer
	EDM02051	(Get FASTA)	NCBI Sequence Viewer
	EDM02052	(Get FASTA)	NCBI Sequence Viewer
	Q811U3	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_740769 ⟸ NM_170788

- Sequence:

show sequence

MYGSARSVGKVEPSSQSPGRSPRLPRSPRLGHRRTNSTGGSSGNSVGGGSGKTLSMENIQSLNA
AYATSGPMYLSDHENVGAETPKSTMTLGRSGGRLPYGVRMTAMGSSPNIASSGVASDTIAFGEH
HLPPVSMASTVPHSLRQARDNTIMDLQTQLKEVLRENDLLRKDVEVKESKLSSSMNSIKTFWSP
ELKKERALRKDEASKITIWKEQYRVVQEENQHMQMTIQALQDELRIQRDLNQLFQQDSSSRTGE
PCVAELTEENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKG
LSAKATEEDHERTRRLAEAEMHVHHLESLLEQKEKENNMLREEMHRRFENAPDSAKTKALQTVI
EMKDSKISSMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSHSKFMKNKIGQVKQELS
RKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNK
KTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSL
QADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLKEKVSLLQGDL
SEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPE
MSDRIQQLEREIARYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNKK
VANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQVEELLMAMEKVKQELESMKAKLSSTQQ
SLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKRE
KDRLVQQLKQQTQNRMKLMADNYEDDHFRSSRSNQTNHKPSPDQDEEEGIWA

hide sequence

RefSeq Acc Id:

XP_006237292 ⟸ XM_006237230

- Peptide Label:

isoform X8

- Sequence:

show sequence

MYGSARSVGKVEPSSQSPGRSPRLPRSPRLGHRRTNSTGGSSGNSVGGGSGKTLSMENIQSLNA
AYATSGPMYLSDHENVGAETPKSTMTLGRSGGRLPYGVRMTAMGSSPNIASSGVASDTIAFGEH
HLPPVSMASTVPHSLRQARDNTIMDLQTQLKEVLRENDLLRKDVEVKESKLSSSMNSIKTFWSP
ELKKERALRKDEASKITIWKEQYRVVQEENQHMQMTIQALQDELRIQRDLNQLFQQDSSSRTGE
PCVAELTEENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKG
LSAKATEEDHERTRRLAEAEMHVHHLESLLEQKEKENNMLREEMHRRFENAPDSAKTKALQTVI
EMKDSKISSMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSHSKFMKNKIGQVKQELS
RKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNK
KTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSL
QADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLKEKVSLLQGDL
SEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPE
MSDRIQQLEREMARYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANL
KHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQVEELLMAMEKVKQELESMKAKLSSTQQSLAE
KETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRL
VQQLKQQTQNRMKLMADNYEDDHFRSSRSNQTNHKPSPDQIIQPLLELDQNRSKLKLYIGHLTA
LCHDRDPLILRGLTPPASYNADGEQAAWENELQKMTQEQLQNELEKVEGDNAELQEFANTILQQ
IADHCPDILEQVVNALEESS

hide sequence

RefSeq Acc Id:

XP_006237289 ⟸ XM_006237227

- Peptide Label:

isoform X6

- Sequence:

show sequence

MYGSARSVGKVEPSSQSPGRSPRLPRSPRLGHRRTNSTGGSSGNSVGGGSGKTLSMENIQSLNA
AYATSGPMYLSDHENVGAETPKSTMTLGRSGGRLPYGVRMTAMGSSPNIASSGVASDTIAFGEH
HLPPVSMASTVPHSLRQARDNTIMDLQTQLKEVLRENDLLRKDVEVKESKLSSSMNSIKTFWSP
ELKKERALRKDEASKITIWKEQYRVVQEENQHMQMTIQALQDELRIQRDLNQLFQQDSSSRTGE
PCVAELTEENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKG
LSAKATEEDHERTRRLAEAEMHVHHLESLLEQKEKENNMLREEMHRRFENAPDSAKTKALQTVI
EMKDSKISSMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSHSKFMKNKIGQVKQELS
RKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNK
KTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSL
QADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLKEKVSLLQGDL
SEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPE
MSDRIQQLEREMARYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANL
KHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVL
AQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVL
EMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQNRMKLMADNYE
DDHFRSSRSNQTNHKPSPDQIIQPLLELDQNRSKLKLYIGHLTALCHDRDPLILRGLTPPASYN
ADGEQAAWENELQKMTQEQLQNELEKVEGDNAELQEFANTILQQIADHCPDILEQVVNALEESS

hide sequence

RefSeq Acc Id:

XP_006237288 ⟸ XM_006237226

- Peptide Label:

isoform X5

- Sequence:

show sequence

MYGSARSVGKVEPSSQSPGRSPRLPRSPRLGHRRTNSTGGSSGNSVGGGSGKTLSMENIQSLNA
AYATSGPMYLSDHENVGAETPKSTMTLGRSGGRLPYGVRMTAMGSSPNIASSGVASDTIAFGEH
HLPPVSMASTVPHSLRQARDNTIMDLQTQLKEVLRENDLLRKDVEVKESKLSSSMNSIKTFWSP
ELKKERALRKDEASKITIWKEQYRVVQEENQHMQMTIQALQDELRIQRDLNQLFQQDSSSRTGE
PCVAELTEENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKG
LSAKATEEDHERTRRLAEAEMHVHHLESLLEQKEKENNMLREEMHRRFENAPDSAKTKALQTVI
EMKDSKISSMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSHSKFMKNKIGQVKQELS
RKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNK
KTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSL
QADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLKEKVSLLQGDL
SEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPE
MSDRIQQLEREMARYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNKK
VANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAER
EMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHL
EEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQNRMKLMA
DNYEDDHFRSSRSNQTNHKPSPDQIIQPLLELDQNRSKLKLYIGHLTALCHDRDPLILRGLTPP
ASYNADGEQAAWENELQKMTQEQLQNELEKVEGDNAELQEFANTILQQIADHCPDILEQVVNAL
EESS

hide sequence

RefSeq Acc Id:

XP_006237287 ⟸ XM_006237225

- Peptide Label:

isoform X4

- Sequence:

show sequence

MYGSARSVGKVEPSSQSPGRSPRLPRSPRLGHRRTNSTGGSSGNSVGGGSGKTLSMENIQSLNA
AYATSGPMYLSDHENVGAETPKSTMTLGRSGGRLPYGVRMTAMGSSPNIASSGVASDTIAFGEH
HLPPVSMASTVPHSLRQARDNTIMDLQTQLKEVLRENDLLRKDVEVKESKLSSSMNSIKTFWSP
ELKKERALRKDEASKITIWKEQYRVVQEENQHMQMTIQALQDELRIQRDLNQLFQQDSSSRTGE
PCVAELTEENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKG
LSAKATEEDHERTRRLAEAEMHVHHLESLLEQKEKENNMLREEMHRRFENAPDSAKTKALQTVI
EMKDSKISSMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSHSKFMKNKVEQLKEELS
SKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTA
KEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVL
QKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDE
REKQEEIDTYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALE
QKKEECLKMESQLKKAHEATLEARASPEMSDRIQQLEREMARYKDESSKAQTEVDRLLEILKEV
ENEKNDKDKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSL
RKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLS
STQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAA
LKREKDRLVQQLKQQTQNRMKLMADNYEDDHFRSSRSNQTNHKPSPDQIIQPLLELDQNRSKLK
LYIGHLTALCHDRDPLILRGLTPPASYNADGEQAAWENELQKMTQEQLQNELEKVEGDNAELQE
FANTILQQIADHCPDILEQVVNALEESS

hide sequence

RefSeq Acc Id:	XP_006237286 ⟸ XM_006237224
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2JYT1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MYGSARSVGKVEPSSQSPGRSPRLPRSPRLGHRRTNSTGGSSGNSVGGGSGKTLSMENIQSLNA AYATSGPMYLSDHENVGAETPKSTMTLGRSGGRLPYGVRMTAMGSSPNIASSGVASDTIAFGEH HLPPVSMASTVPHSLRQARDNTIMDLQTQLKEVLRENDLLRKDVEVKESKLSSSMNSIKTFWSP ELKKERALRKDEASKITIWKEQYRVVQEENQHMQMTIQALQDELRIQRDLNQLFQQDSSSRTGE PCVAELTEENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKG LSAKATEEDHERTRRLAEAEMHVHHLESLLEQKEKENNMLREEMHRRFENAPDSAKTKALQTVI EMKDSKISSMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSHSKFMKNKVEQLKEELS SKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTA KEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVL QKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDE REKQEEIDTYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALE QKKEECLKMESQLKKAHEATLEARASPEMSDRIQQLEREMARYKDESSKAQTEVDRLLEILKEV ENEKNDKDKKIAELESLTSRQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQL QDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMK AKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQE EVAALKREKDRLVQQLKQQTQNRMKLMADNYEDDHFRSSRSNQTNHKPSPDQIIQPLLELDQNR SKLKLYIGHLTALCHDRDPLILRGLTPPASYNADGEQAAWENELQKMTQEQLQNELEKVEGDNA ELQEFANTILQQIADHCPDILEQVVNALEESS hide sequence

RefSeq Acc Id:

XP_017447979 ⟸ XM_017592490

- Peptide Label:

isoform X10

- Sequence:

show sequence

MYGSARSVGKVEPSSQSPGRSPRLPRSPRLGHRRTNSTGGSSGNSVGGGSGKTLSMENIQSLNA
AYATSGPMYLSDHENVGAETPKSTMTLGRSGGRLPYGVRMTAMGSSPNIASSGVASDTIAFGEH
HLPPVSMASTVPHSLRQARDNTIMDLQTQLKEVLRENDLLRKDVEVKESKLSSSMNSIKTFWSP
ELKKERALRKDEASKITIWKEQYRVVQEENQHMQMTIQALQDELRIQRDLNQLFQQDSSSRTGE
PCVAELTEENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKG
LSAKATEEDHERTRRLAEAEMHVHHLESLLEQKEKENNMLREEMHRRFENAPDSAKTKALQTVI
EMKDSKISSMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSHSKFMKNKIGQVKQELS
RKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNK
KTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSL
QADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLKEKVSLLQGDL
SEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPE
MSDRIQQLEREMARYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNKK
VANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAER
EMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHL
EEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQNRMKLMA
DNYEDDHFRSSRSNQTNHKPSPDQDEEEGIWA

hide sequence

RefSeq Acc Id:

XP_017447980 ⟸ XM_017592491

- Peptide Label:

isoform X12

- Sequence:

show sequence

MYGSARSVGKVEPSSQSPGRSPRLPRSPRLGHRRTNSTGGSSGNSVGGGSGKTLSMENIQSLNA
AYATSGPMYLSDHENVGAETPKSTMTLGRSGGRLPYGVRMTAMGSSPNIASSGVASDTIAFGEH
HLPPVSMASTVPHSLRQARDNTIMDLQTQLKEVLRENDLLRKDVEVKESKLSSSMNSIKTFWSP
ELKKERALRKDEASKITIWKEQYRVVQEENQHMQMTIQALQDELRIQRDLNQLFQQDSSSRTGE
PCVAELTEENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKG
LSAKATEEDHERTRRLAEAEMHVHHLESLLEQKEKENNMLREEMHRRFENAPDSAKTKALQTVI
EMKDSKISSMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSHSKFMKNKVEQLKEELS
SKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTA
KEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVL
QKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDE
REKQEEIDTYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALE
QKKEECLKMESQLKKAHEATLEARASPEMSDRIQQLEREMARYKDESSKAQTEVDRLLEILKEV
ENEKNDKDKKIAELESLTSRQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQL
QVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAIS
EKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQNRMKLMADNYEDDHFRSSRSNQT
NHKPSPDQDEEEGIWA

hide sequence

RefSeq Acc Id:

ENSRNOP00000012397 ⟸ ENSRNOT00000012397

RefSeq Acc Id:

ENSRNOP00000070778 ⟸ ENSRNOT00000091473

RefSeq Acc Id:	XP_038963078 ⟸ XM_039107150
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_038963075 ⟸ XM_039107147
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038963076 ⟸ XM_039107148
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038963080 ⟸ XM_039107152
- Peptide Label:	isoform X11

RefSeq Acc Id:	XP_038963079 ⟸ XM_039107151
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_038963082 ⟸ XM_039107154
- Peptide Label:	isoform X13

RefSeq Acc Id:

ENSRNOP00000092904 ⟸ ENSRNOT00000102886

RefSeq Acc Id:

ENSRNOP00000094050 ⟸ ENSRNOT00000109038

RefSeq Acc Id:

ENSRNOP00000084657 ⟸ ENSRNOT00000115061

Protein Domains

FIP-RBD

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693353

Promoter ID:

EPDNEW_R3875

Type:

multiple initiation site

Name:

Erc1_1

Description:

ELKS/RAB6-interacting/CAST family member 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	152,380,207 - 152,380,267	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN-Lx/CubMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BUF/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH2/CubMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH3/CubMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

DA/OlaHsd (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/DuCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

F344/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FXLE16/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FXLE18/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/FarMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

HXB10/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB2/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB20/IpcvMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB31/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB4/IpcvMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEXF10A/StmMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF11/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1A/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1C/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF2B/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF3/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF4/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

M520/NRrrcMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MWF/Hsd (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

PVG/Seac (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/OlalpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/A3NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/RijCrl (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:628733	AgrOrtholog
Ensembl Genes	ENSRNOG00000009264	Ensembl, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000012397	UniProtKB/TrEMBL
	ENSRNOP00000070778	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000012397	UniProtKB/TrEMBL
	ENSRNOT00000091473	UniProtKB/TrEMBL
InterPro	ELKS/CAST	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	FIP-RBD_C_sf	UniProtKB/TrEMBL
	Rab-bd_FIP-RBD	UniProtKB/TrEMBL
KEGG Report	rno:266806	UniProtKB/Swiss-Prot
NCBI Gene	266806	ENTREZGENE
Pfam	Cast	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	RBD-FIP	UniProtKB/TrEMBL
PhenoGen	Erc1	PhenoGen
PROSITE	FIP_RBD	UniProtKB/TrEMBL
Superfamily-SCOP	SSF144270	UniProtKB/TrEMBL
UniProt	A0A0G2JYT1	ENTREZGENE, UniProtKB/TrEMBL
	F1LPE9_RAT	UniProtKB/TrEMBL
	Q811U3	ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary	Q8CIY9	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-02-25	Erc1	ELKS/RAB6-interacting/CAST family member 1	Rab6ip2	Rab6 interacting protein 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2004-09-10	Rab6ip2	Rab6 interacting protein 2	Elks	ELKS protein	Symbol and Name updated	1299863	APPROVED
2003-02-27	Elks	ELKS protein			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_transcript	has two alternative splicing variants; one variant generates a longer transcript that does not bind to RIMs	632516

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Annotations - PID (archival)

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Imported Disease Annotations - ClinVar

Imported Annotations - PID (archival)