AA800651 Marker Search Result - Rat Genome Database

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Marker: AA800651

Symbol: AA800651
Previously known as:
RGD ID: 5087038
Expected Size: 197 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.213102,931,419 - 102,931,616 (+)MAPPERmRatBN7.2
mRatBN7.24162,232,974 - 162,233,171 (+)MAPPERmRatBN7.2
Rnor_6.013110,033,706 - 110,033,902NCBIRnor6.0
Rnor_6.04162,296,328 - 162,296,524NCBIRnor6.0
Rnor_5.013114,599,287 - 114,599,483UniSTSRnor5.0
Rnor_5.04227,494,546 - 227,494,742UniSTSRnor5.0
RGSC_v3.44166,002,483 - 166,002,679UniSTSRGSC3.4
RGSC_v3.413107,413,917 - 107,414,113UniSTSRGSC3.4
Celera13102,370,565 - 102,370,761UniSTS
Celera4150,931,753 - 150,931,949UniSTS
RH 3.4 Map13726.5UniSTS
Cytogenetic Map4q42UniSTS
Cytogenetic Map13q27UniSTS
Is Marker For: Genes:   Clec2d   Ppp2r5a  




#
Reference Title
Reference Citation
1. UniSTS Pipeline RGD automated pipelines


 
Forward Primer AGGCTTCTACGCAGTCAATTCAG
Reverse Primer ACCCTAGCTCACCTCCTTCATTC
 


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1308022Ppp2r5aprotein phosphatase 2, regulatory subunit B', alpha13102931264102975661Rat
620070Clec2dC-type lectin domain family 2, member D4162216052162239530Rat
7696800Ppp2r5al1protein phosphatase 2, regulatory subunit B', alpha like 14162232814162235046Rat
RefSeq Transcripts NM_001107891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC125873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH614823.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


1 to 10 of 45 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
7387280Uae43Urinary albumin excretion QTL 435.690.4174urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1366451204106807694Rat
2293702Bss34Bone structure and strength QTL 344.610.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1365103704106807694Rat
2293687Bss26Bone structure and strength QTL 264.60.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1365103704106807694Rat
12879475Bp400Blood pressure QTL 400arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1361825626106807694Rat
4889606Gluco63Glucose level QTL 632.860.003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1380753256106807694Rat
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4144639524182687754Rat
724558Plsm2Polydactyly-luxate syndrome (PLS) morphotypes QTL 20.0003hindlimb integrity trait (VT:0010563)hind foot phalanges count (CMO:0001949)4132422778177422778Rat
1582237Kidm34Kidney mass QTL 3440.0001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)4148090542168069246Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4144639524182687754Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)426775591168368347Rat

1 to 10 of 45 rows


Database
Acc Id
Source(s)
NCBI Gene 113937 UniSTS
  312754 UniSTS