LOC120102599 (U6 spliceosomal RNA) - Rat Genome Database

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Gene: LOC120102599 (U6 spliceosomal RNA) Rattus norvegicus
Analyze
Symbol: LOC120102599
Name: U6 spliceosomal RNA
RGD ID: 41073923
Description:
Type: snrna
RefSeq Status: MODEL
Previously known as: U6
RGD Orthologs
Human
Mouse
Dog
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84183,758,160 - 183,758,271 (-)NCBIGRCr8
mRatBN7.24182,026,818 - 182,026,929 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4182,026,818 - 182,026,929 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl4183,542,213 - 183,542,313 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map4q44NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
LOC120102599
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84183,758,160 - 183,758,271 (-)NCBIGRCr8
mRatBN7.24182,026,818 - 182,026,929 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4182,026,818 - 182,026,929 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl4183,542,213 - 183,542,313 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map4q44NCBI
U6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381598,026,044 - 98,026,139 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1598,026,042 - 98,026,139 (+)EnsemblGRCh38hg38GRCh38
Cytogenetic Map15q26.3NCBI
T2T-CHM13v2.01595,791,690 - 95,791,785 (+)NCBIT2T-CHM13v2.0
Gm23792
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39134,020,491 - 34,020,583 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl134,020,491 - 34,020,583 (-)EnsemblGRCm39 Ensembl
GRCm38133,981,410 - 33,981,502 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl133,981,410 - 33,981,502 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map1BNCBI
LOC119866795
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ROS_Cfam_1.02941,728,334 - 41,728,440 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2941,728,334 - 41,728,440 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12941,767,420 - 41,767,526 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02941,737,242 - 41,737,348 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02942,202,383 - 42,202,489 (+)NCBIUU_Cfam_GSD_1.0


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4144639524182687754Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4144639524182687754Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4145568712182687754Rat
10053718Scort25Serum corticosterone level QTL 252.150.0097blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)4155561574182687754Rat
1300109Rf13Renal function QTL 133.91renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)4157710145182687754Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005504234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000079232
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4182,026,818 - 182,026,929 (-)Ensembl
RefSeq Acc Id: XR_005504234
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84183,758,160 - 183,758,271 (-)NCBI
mRatBN7.24182,026,818 - 182,026,929 (-)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-42366 BioCyc
Ensembl Genes ENSRNOG00000058680 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000079232 ENTREZGENE
NCBI Gene LOC120102599 ENTREZGENE
PhenoGen LOC120102599 PhenoGen
RatGTEx ENSRNOG00000058680 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120102599  U6 spliceosomal RNA  U6  U6 spliceosomal RNA  Data merged from RGD:15011966 737654 PROVISIONAL
2021-01-27 LOC120102599  U6 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 U6  U6 spliceosomal RNA      Symbol and Name status set to provisional 45752 PROVISIONAL