Fancd2 (FA complementation group D2) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Fancd2 (FA complementation group D2) Rattus norvegicus
Analyze
Symbol: Fancd2
Name: FA complementation group D2
RGD ID: 1303172
Description: Predicted to enable DNA polymerase binding activity. Predicted to be involved in several processes, including interstrand cross-link repair; meiosis I; and mitotic intra-S DNA damage checkpoint signaling. Predicted to act upstream of or within several processes, including neuronal stem cell population maintenance; regulation of CD40 signaling pathway; and regulation of regulatory T cell differentiation. Predicted to be located in cytosol; nuclear body; and nucleolus. Predicted to be part of DNA repair complex. Predicted to be active in condensed chromosome and nucleus. Human ortholog(s) of this gene implicated in Fanconi anemia; Fanconi anemia complementation group D2; and breast cancer. Orthologous to human FANCD2 (FA complementation group D2); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Fanconi anemia D2 protein; fanconi anemia group D2 protein homolog; Fanconi anemia, complementation group D2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24146,679,014 - 146,743,422 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4146,679,179 - 146,743,412 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4152,065,549 - 152,127,238 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.04147,846,392 - 147,908,105 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.04146,468,475 - 146,536,203 (+)NCBIRnor_WKY
Rnor_6.04145,489,869 - 145,551,479 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4145,489,869 - 145,551,479 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04208,784,762 - 208,848,203 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44149,424,558 - 149,500,006 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14149,669,398 - 149,744,847 (+)NCBI
Celera4135,237,405 - 135,297,717 (+)NCBICelera
Cytogenetic Map4q42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
4-hydroxy-TEMPO  (ISO)
4-hydroxynon-2-enal  (ISO)
6-propyl-2-thiouracil  (EXP)
acetaldehyde  (ISO)
acetamide  (EXP)
acrolein  (ISO)
acrylamide  (EXP)
aflatoxin B1  (EXP,ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bortezomib  (ISO)
butanal  (ISO)
calcitriol  (ISO)
carbamazepine  (ISO)
carmustine  (ISO)
cefaloridine  (EXP)
chlormequat chloride  (EXP)
chromium(6+)  (ISO)
cisplatin  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
curcumin  (ISO)
cyclosporin A  (ISO)
diarsenic trioxide  (ISO)
diepoxybutane  (ISO)
digitoxin  (ISO)
digoxin  (ISO)
dioxygen  (ISO)
doxorubicin  (EXP,ISO)
endosulfan  (ISO)
Enterolactone  (ISO)
enzyme inhibitor  (ISO)
erastin  (EXP)
ethanol  (ISO)
flutamide  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
furan  (EXP)
hydroxyurea  (ISO)
ivermectin  (ISO)
Lasiocarpine  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
leflunomide  (ISO)
lidocaine  (EXP)
methotrexate  (ISO)
methylarsonic acid  (ISO)
mitomycin C  (ISO)
monocrotaline  (ISO)
N-Nitrosopyrrolidine  (ISO)
nickel dichloride  (ISO)
nitrogen mustard  (ISO)
ouabain  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
PCB138  (ISO)
pentanal  (ISO)
phenethyl isothiocyanate  (ISO)
propanal  (ISO)
resveratrol  (EXP,ISO)
riddelliine  (ISO)
rotenone  (ISO)
SB 203580  (ISO)
senecionine  (EXP)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
temozolomide  (ISO)
testosterone  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP)
trimellitic anhydride  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

References

References - curated
# Reference Title Reference Citation
1. FANCD2 associated with sporadic breast cancer risk. Barroso E, etal., Carcinogenesis. 2006 Sep;27(9):1930-7. Epub 2006 May 5.
2. Overabundant FANCD2, alone and combined with NQO1, is a sensitive marker of adverse prognosis in breast cancer. Fagerholm R, etal., Ann Oncol. 2013 Nov;24(11):2780-5. doi: 10.1093/annonc/mdt290. Epub 2013 Jul 29.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Epithelial cancer in Fanconi anemia complementation group D2 (Fancd2) knockout mice. Houghtaling S, etal., Genes Dev. 2003 Aug 15;17(16):2021-35. Epub 2003 Jul 31.
5. Upregulation of Fanconi anemia DNA repair genes in melanoma compared with non-melanoma skin cancer. Kao WH, etal., J Invest Dermatol. 2011 Oct;131(10):2139-42. doi: 10.1038/jid.2011.181. Epub 2011 Jun 23.
6. Regulated interaction of the Fanconi Anemia protein, FANCD2, with chromatin. Montes De Oca R, etal., Blood 2004 Sep 28;.
7. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
8. Deficiencies in the Fanconi anemia DNA damage response pathway increase sensitivity to HPV-associated head and neck cancer. Park JW, etal., Cancer Res. 2010 Dec 1;70(23):9959-68. doi: 10.1158/0008-5472.CAN-10-1291. Epub 2010 Oct 8.
9. FANCD2 Western blot as a diagnostic tool for Brazilian patients with Fanconi anemia. Pilonetto DV, etal., Braz J Med Biol Res. 2009 Mar;42(3):237-43.
10. GOA pipeline RGD automated data pipeline
11. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
13. Comprehensive gene review and curation RGD comprehensive gene curation
14. Positional cloning of a novel Fanconi anemia gene, FANCD2. Timmers C, etal., Mol Cell. 2001 Feb;7(2):241-8.
15. Fanconi anemia protein FANCD2 promotes immunoglobulin gene conversion and DNA repair through a mechanism related to homologous recombination. Yamamoto K, etal., Mol Cell Biol 2005 Jan;25(1):34-43.
Additional References at PubMed
PMID:12874027   PMID:12913077   PMID:19995904   PMID:24001775   PMID:24483844   PMID:24501220   PMID:26323318  


Genomics

Comparative Map Data
Fancd2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24146,679,014 - 146,743,422 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4146,679,179 - 146,743,412 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4152,065,549 - 152,127,238 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.04147,846,392 - 147,908,105 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.04146,468,475 - 146,536,203 (+)NCBIRnor_WKY
Rnor_6.04145,489,869 - 145,551,479 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4145,489,869 - 145,551,479 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04208,784,762 - 208,848,203 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44149,424,558 - 149,500,006 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14149,669,398 - 149,744,847 (+)NCBI
Celera4135,237,405 - 135,297,717 (+)NCBICelera
Cytogenetic Map4q42NCBI
FANCD2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38310,026,437 - 10,101,932 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl310,026,370 - 10,101,932 (+)EnsemblGRCh38hg38GRCh38
GRCh37310,068,121 - 10,143,616 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36310,043,113 - 10,118,614 (+)NCBINCBI36Build 36hg18NCBI36
Build 34310,043,127 - 10,116,344NCBI
Celera310,003,566 - 10,079,281 (+)NCBICelera
Cytogenetic Map3p25.3NCBI
HuRef310,004,471 - 10,079,989 (+)NCBIHuRef
CHM1_1310,018,248 - 10,093,721 (+)NCBICHM1_1
T2T-CHM13v2.0310,018,435 - 10,094,151 (+)NCBIT2T-CHM13v2.0
Fancd2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396113,508,622 - 113,573,981 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6113,508,643 - 113,573,978 (+)EnsemblGRCm39 Ensembl
GRCm386113,531,640 - 113,597,020 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6113,531,682 - 113,597,017 (+)EnsemblGRCm38mm10GRCm38
MGSCv376113,481,676 - 113,546,279 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366113,497,462 - 113,562,062 (+)NCBIMGSCv36mm8
Celera6115,358,610 - 115,423,076 (+)NCBICelera
Cytogenetic Map6E3NCBI
Fancd2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555611,464,869 - 1,538,045 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555611,460,080 - 1,538,026 (+)NCBIChiLan1.0ChiLan1.0
FANCD2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1310,310,243 - 10,389,229 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl310,312,476 - 10,389,190 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v039,932,292 - 10,037,332 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
FANCD2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1208,240,270 - 8,297,269 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl208,240,311 - 8,297,568 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha208,273,907 - 8,330,979 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0208,269,549 - 8,326,574 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl208,269,554 - 8,324,740 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1207,991,543 - 8,048,583 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0208,337,151 - 8,394,193 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0208,310,467 - 8,367,476 (-)NCBIUU_Cfam_GSD_1.0
Fancd2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494215,689,153 - 15,747,539 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366023,162,177 - 3,220,468 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FANCD2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1366,241,967 - 66,310,433 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11366,241,951 - 66,308,601 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21373,314,050 - 73,380,806 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FANCD2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12246,072,797 - 46,141,107 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2246,072,761 - 46,140,713 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041120,404,952 - 120,478,639 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fancd2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247314,611,963 - 4,671,765 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247314,577,663 - 4,671,086 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Fancd2
460 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:33
Count of miRNA genes:32
Interacting mature miRNAs:33
Transcripts:ENSRNOT00000033580
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2293840Kiddil9Kidney dilation QTL 92.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)4120926564148090731Rat
61434Cia3Collagen induced arthritis QTL 34.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4103194656148194656Rat
70177Xhs1X-ray hypersensitivity QTL 125.1intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)482798864152731274Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)456647873149491524Rat
70201Gcr1Gastric cancer resistance QTL 12.7stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)4120260281147278687Rat
2302049Pia32Pristane induced arthritis QTL 325.10.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)4105789505150789505Rat
61451Ciaa4CIA Autoantibody QTL 43.1blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)4126395976167139601Rat
724535Cm18Cardiac mass QTL 182.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)4118856416163856416Rat
724558Plsm2Polydactyly-luxate syndrome (PLS) morphotypes QTL 20.0003hindlimb integrity trait (VT:0010563)hind foot phalanges count (CMO:0001949)4132422778177422778Rat
731165Uae21Urinary albumin excretion QTL 212.40.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)4106649412151649412Rat
1331738Bp209Blood pressure QTL 2092.979arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)4138503169179293946Rat
1331759Hrtrt13Heart rate QTL 133.54628heart pumping trait (VT:2000009)heart rate (CMO:0000002)4110275411168266883Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4109866907167139601Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)450119848146803430Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)464528739157573521Rat
631683Bp116Blood pressure QTL 1160.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4124303370169303370Rat
737978Pia23Pristane induced arthritis QTL 235.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4131730738167139601Rat
1331802Srn5Serum renin concentration QTL 53.045renin activity (VT:0005581)plasma renin activity level (CMO:0000116)4119428175157578333Rat
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)485253748148090731Rat
1298524Oia8Oil induced arthritis QTL 8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4138503169173369699Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)459948935154902892Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
631511Pia7Pristane induced arthritis QTL 74.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4131730738167139601Rat
2293659Bmd35Bone mineral density QTL 354.50.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)4137755016181392681Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)493308457167139447Rat
634342Cia24Collagen induced arthritis QTL 244.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4146565735175236377Rat
634347Hcar8Hepatocarcinoma resistance QTL 85.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)4123143783168143783Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)444463720155883716Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)483428419177635233Rat
1578674Bmd12Bone mineral density QTL 123.8femur mineral mass (VT:0010011)cortical volumetric bone mineral density (CMO:0001730)4135699135180699135Rat
1300116Hrtrt5Heart rate QTL 53.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)4116179486151161268Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)444463908148090542Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)444463908148090542Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)485379421167139601Rat
2312567Glom19Glomerulus QTL 191.90.006kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)445456990146803430Rat
2303623Vencon2Ventilatory control QTL 23.8respiration trait (VT:0001943)minute ventilation (CMO:0000132)4135204660180204660Rat
1549827Scl46Serum cholesterol level QTL 463.5blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)4132396220177396220Rat
1549832Bss3Bone structure and strength QTL 311femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)4109827074154827074Rat
61362Oia2Oil induced arthritis QTL 20.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4138503169173369699Rat
61406Scwia1Streptococcal cell wall induced arthritis QTL 12.3joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)4106805662151805662Rat
61422Cia13Collagen induced arthritis QTL 134.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4132642577167139601Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4144639524182687754Rat
6478760Anxrr45Anxiety related response QTL 450.06717locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
6478763Anxrr46Anxiety related response QTL 460.07428locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
6478778Anxrr51Anxiety related response QTL 510.25384locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4124778595169778595Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4144639524182687754Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
7411558Bw133Body weight QTL 13313.840.001body mass (VT:0001259)body weight gain (CMO:0000420)4125590636170590636Rat
7207480Bss105Bone structure and strength QTL 1058.1femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)4109827074154827074Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4145568712182687754Rat
12798519Anxrr54Anxiety related response QTL 542.540.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4114627026159627026Rat
12798527Anxrr58Anxiety related response QTL 584.110.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4119463257147278687Rat
12798523Anxrr56Anxiety related response QTL 562.830.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)485253748150276390Rat

Markers in Region
RH130630  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24146,743,084 - 146,743,304 (+)MAPPERmRatBN7.2
Rnor_6.04145,551,470 - 145,551,689NCBIRnor6.0
Rnor_5.04208,847,868 - 208,848,087UniSTSRnor5.0
RGSC_v3.44149,499,997 - 149,500,216UniSTSRGSC3.4
Celera4135,297,708 - 135,297,927UniSTS
RH 3.4 Map4947.1UniSTS
Cytogenetic Map4q42UniSTS
RH143207  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24146,728,537 - 146,728,700 (+)MAPPERmRatBN7.2
Rnor_6.04145,536,952 - 145,537,114NCBIRnor6.0
Rnor_5.04208,833,528 - 208,833,690UniSTSRnor5.0
RGSC_v3.44149,484,705 - 149,484,867UniSTSRGSC3.4
Celera4135,283,420 - 135,283,582UniSTS
RH 3.4 Map4946.4UniSTS
Cytogenetic Map4q42UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 24 24 18 13 18 31 18 34
Low 2 19 29 19 6 19 8 11 43 17 7 11 8
Below cutoff 4 4 4

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000082618   ⟹   ENSRNOP00000073556
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4146,681,470 - 146,740,903 (+)Ensembl
Rnor_6.0 Ensembl4145,489,869 - 145,551,479 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000093841   ⟹   ENSRNOP00000077430
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4146,681,470 - 146,743,412 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000094549   ⟹   ENSRNOP00000082801
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4146,683,416 - 146,743,412 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000113277   ⟹   ENSRNOP00000077310
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4146,679,179 - 146,743,412 (+)Ensembl
RefSeq Acc Id: NM_001001719   ⟹   NP_001001719
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24146,681,470 - 146,743,094 (+)NCBI
Rnor_6.04145,489,869 - 145,551,479 (+)NCBI
Rnor_5.04208,784,762 - 208,848,203 (+)NCBI
RGSC_v3.44149,424,558 - 149,500,006 (+)RGD
Celera4135,237,405 - 135,297,717 (+)RGD
Sequence:
RefSeq Acc Id: XM_039107634   ⟹   XP_038963562
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24146,679,014 - 146,743,422 (+)NCBI
RefSeq Acc Id: XM_039107635   ⟹   XP_038963563
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24146,679,062 - 146,743,422 (+)NCBI
RefSeq Acc Id: XM_039107636   ⟹   XP_038963564
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24146,679,239 - 146,743,422 (+)NCBI
RefSeq Acc Id: XM_039107637   ⟹   XP_038963565
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24146,707,116 - 146,743,422 (+)NCBI
RefSeq Acc Id: XR_005503227
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24146,679,014 - 146,740,822 (+)NCBI
RefSeq Acc Id: XR_005503228
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24146,679,014 - 146,716,808 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001001719   ⟸   NM_001001719
- UniProtKB: Q6IV68 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000073556   ⟸   ENSRNOT00000082618
RefSeq Acc Id: XP_038963562   ⟸   XM_039107634
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038963563   ⟸   XM_039107635
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038963564   ⟸   XM_039107636
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038963565   ⟸   XM_039107637
- Peptide Label: isoform X2
RefSeq Acc Id: ENSRNOP00000077430   ⟸   ENSRNOT00000093841
RefSeq Acc Id: ENSRNOP00000077310   ⟸   ENSRNOT00000113277
RefSeq Acc Id: ENSRNOP00000082801   ⟸   ENSRNOT00000094549

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6IV68-F1-model_v2 AlphaFold Q6IV68 1-1451 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1303172 AgrOrtholog
BioCyc Gene G2FUF-43373 BioCyc
Ensembl Genes ENSRNOG00000061085 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000073556 ENTREZGENE
  ENSRNOP00000073556.2 UniProtKB/TrEMBL
  ENSRNOP00000077310 ENTREZGENE
  ENSRNOP00000077310.1 UniProtKB/TrEMBL
  ENSRNOP00000077430 ENTREZGENE
  ENSRNOP00000077430.1 UniProtKB/TrEMBL
  ENSRNOP00000082801.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000082618 ENTREZGENE
  ENSRNOT00000082618.2 UniProtKB/TrEMBL
  ENSRNOT00000093841 ENTREZGENE
  ENSRNOT00000093841.1 UniProtKB/TrEMBL
  ENSRNOT00000094549.1 UniProtKB/TrEMBL
  ENSRNOT00000113277 ENTREZGENE
  ENSRNOT00000113277.1 UniProtKB/TrEMBL
InterPro FANCD2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:312641 UniProtKB/Swiss-Prot
NCBI Gene 312641 ENTREZGENE
PANTHER PTHR32086 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam FancD2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Fancd2 PhenoGen
UniProt A0A0G2K5U0_RAT UniProtKB/TrEMBL
  A0A8I5XW04_RAT UniProtKB/TrEMBL
  A0A8I5YBT6_RAT UniProtKB/TrEMBL
  A0A8I5ZXT8_RAT UniProtKB/TrEMBL
  FACD2_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-25 Fancd2  FA complementation group D2  Fancd2  Fanconi anemia, complementation group D2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-04 Fancd2  Fanconi anemia, complementation group D2  Fancd2  Fanconi anemia D2 protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-14 Fancd2  Fanconi anemia D2 protein      Symbol and Name status set to provisional 70820 PROVISIONAL